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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 31, 51 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 86 |
| AciI | CCGC | 2 cut(s) | 236, 502 |
| AcoI | YGGCCR | 3 cut(s) | 77, 102, 127 |
| AcsI | RAATTY | 1 cut(s) | 569 |
| AfaI | GTAC | 1 cut(s) | 389 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 86 |
| AgsI | TTSAA | 1 cut(s) | 517 |
| AjiI | CACGTC | 1 cut(s) | 30 |
| AjnI | CCWGG | 1 cut(s) | 270 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 429, 461 |
| AluBI | AGCT | 4 cut(s) | 13, 38, 296, 302 |
| AluI | AGCT | 4 cut(s) | 13, 38, 296, 302 |
| Alw26I | GTCTC | 1 cut(s) | 433 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 3 cut(s) | 77, 102, 127 |
| ApeKI | GCWGC | 2 cut(s) | 35, 320 |
| ApoI | RAATTY | 1 cut(s) | 569 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 546 |
| AsuHPI | GGTGA | 2 cut(s) | 101, 579 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| BalI | TGGCCA | 1 cut(s) | 104 |
| BbsI | GAAGAC | 1 cut(s) | 414 |
| BbvI | GCAGC | 2 cut(s) | 47, 332 |
| BccI | CCATC | 3 cut(s) | 233, 356, 483 |
| BciT130I | CCWGG | 1 cut(s) | 272 |
| BcoDI | GTCTC | 1 cut(s) | 433 |
| BfaI | CTAG | 2 cut(s) | 267, 479 |
| BfuAI | ACCTGC | 2 cut(s) | 31, 51 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 329 |
| BisI | GCNGC | 2 cut(s) | 36, 321 |
| BlsI | GCNGC | 2 cut(s) | 37, 322 |
| Bme1390I | CCNGG | 1 cut(s) | 272 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgBI | CACGTC | 1 cut(s) | 30 |
| BmrFI | CCNGG | 1 cut(s) | 272 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 1 cut(s) | 414 |
| BpmI | CTGGAG | 1 cut(s) | 368 |
| BpuEI | CTTGAG | 2 cut(s) | 215, 282 |
| BsaI | GGTCTC | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 86 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| BseBI | CCWGG | 1 cut(s) | 272 |
| BseGI | GGATG | 4 cut(s) | 244, 280, 351, 379 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BseMII | CTCAG | 1 cut(s) | 552 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BseXI | GCAGC | 2 cut(s) | 47, 332 |
| BshFI | GGCC | 3 cut(s) | 79, 104, 129 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BsiSI | CCGG | 1 cut(s) | 126 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BsmAI | GTCTC | 1 cut(s) | 433 |
| BsnI | GGCC | 3 cut(s) | 79, 104, 129 |
| Bso31I | GGTCTC | 1 cut(s) | 433 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp143I | GATC | 1 cut(s) | 48 |
| BspACI | CCGC | 2 cut(s) | 236, 502 |
| BspANI | GGCC | 3 cut(s) | 79, 104, 129 |
| BspCNI | CTCAG | 1 cut(s) | 551 |
| BspMI | ACCTGC | 2 cut(s) | 31, 51 |
| BspTNI | GGTCTC | 1 cut(s) | 433 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssMI | GATC | 1 cut(s) | 48 |
| Bst2UI | CCWGG | 1 cut(s) | 272 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 558 |
| BstC8I | GCNNGC | 1 cut(s) | 294 |
| BstDEI | CTNAG | 2 cut(s) | 325, 538 |
| BstF5I | GGATG | 4 cut(s) | 244, 280, 351, 379 |
| BstKTI | GATC | 1 cut(s) | 51 |
| BstMAI | GTCTC | 1 cut(s) | 433 |
| BstMBI | GATC | 1 cut(s) | 48 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 32, 308, 317, 329, 338, 558 |
| BstNI | CCWGG | 1 cut(s) | 272 |
| BstSCI | CCNGG | 1 cut(s) | 270 |
| BstV1I | GCAGC | 2 cut(s) | 47, 332 |
| BstV2I | GAAGAC | 1 cut(s) | 414 |
| BsuRI | GGCC | 3 cut(s) | 79, 104, 129 |
| BtrI | CACGTC | 1 cut(s) | 30 |
| BtsCI | GGATG | 4 cut(s) | 244, 280, 351, 379 |
| BveI | ACCTGC | 2 cut(s) | 31, 51 |
| Cac8I | GCNNGC | 1 cut(s) | 294 |
| Csp6I | GTAC | 1 cut(s) | 388 |
| CviQI | GTAC | 1 cut(s) | 388 |
| DdeI | CTNAG | 2 cut(s) | 325, 538 |
| DpnI | GATC | 1 cut(s) | 50 |
| DpnII | GATC | 1 cut(s) | 48 |
| EaeI | YGGCCR | 3 cut(s) | 77, 102, 127 |
| EciI | GGCGGA | 1 cut(s) | 251 |
| Eco31I | GGTCTC | 1 cut(s) | 433 |
| Eco32I | GATATC | 2 cut(s) | 197, 217 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoRI | GAATTC | 1 cut(s) | 569 |
| EcoRII | CCWGG | 1 cut(s) | 270 |
| EcoRV | GATATC | 2 cut(s) | 197, 217 |
| FaiI | YATR | 7 cut(s) | 254, 369, 371, 396, 398, 495, 534 |
| FauNDI | CATATG | 1 cut(s) | 369 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 321 |
| FokI | GGATG | 4 cut(s) | 251, 287, 338, 386 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 321 |
| FspBI | CTAG | 2 cut(s) | 267, 479 |
| GluI | GCNGC | 2 cut(s) | 36, 321 |
| GsuI | CTGGAG | 1 cut(s) | 368 |
| HaeIII | GGCC | 3 cut(s) | 79, 104, 129 |
| HapII | CCGG | 1 cut(s) | 126 |
| HincII | GTYRAC | 4 cut(s) | 20, 45, 56, 66 |
| HindII | GTYRAC | 4 cut(s) | 20, 45, 56, 66 |
| HindIII | AAGCTT | 1 cut(s) | 300 |
| HinfI | GANTC | 7 cut(s) | 188, 243, 256, 361, 377, 461, 584 |
| HpaII | CCGG | 1 cut(s) | 126 |
| HphI | GGTGA | 2 cut(s) | 101, 579 |
| Hpy166II | GTNNAC | 4 cut(s) | 20, 45, 56, 66 |
| Hpy188I | TCNGA | 1 cut(s) | 541 |
| Hpy188III | TCNNGA | 5 cut(s) | 192, 212, 260, 473, 527 |
| Hpy8I | GTNNAC | 4 cut(s) | 20, 45, 56, 66 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4IV | ACGT | 3 cut(s) | 16, 29, 453 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 32, 308, 317, 329, 338, 558 |
| HpyF3I | CTNAG | 2 cut(s) | 325, 538 |
| HpySE526I | ACGT | 3 cut(s) | 16, 29, 453 |
| Kzo9I | GATC | 1 cut(s) | 48 |
| LmnI | GCTCC | 2 cut(s) | 175, 387 |
| Lsp1109I | GCAGC | 2 cut(s) | 47, 332 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 2 cut(s) | 267, 479 |
| MaeII | ACGT | 3 cut(s) | 16, 29, 453 |
| MaeIII | GTNAC | 3 cut(s) | 89, 146, 458 |
| MalI | GATC | 1 cut(s) | 50 |
| MboI | GATC | 1 cut(s) | 48 |
| MboII | GAAGA | 3 cut(s) | 416, 419, 449 |
| MlsI | TGGCCA | 1 cut(s) | 104 |
| MluCI | AATT | 2 cut(s) | 158, 569 |
| MluNI | TGGCCA | 1 cut(s) | 104 |
| MlyI | GAGTC | 3 cut(s) | 182, 355, 455 |
| MnlI | CCTC | 2 cut(s) | 322, 509 |
| Mox20I | TGGCCA | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 546 |
| MscI | TGGCCA | 1 cut(s) | 104 |
| MseI | TTAA | 3 cut(s) | 137, 555, 563 |
| MslI | CAYNNNNRTG | 2 cut(s) | 356, 372 |
| Msp20I | TGGCCA | 1 cut(s) | 104 |
| MspI | CCGG | 1 cut(s) | 126 |
| MspR9I | CCNGG | 1 cut(s) | 272 |
| MvaI | CCWGG | 1 cut(s) | 272 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 32, 308, 317, 329, 338, 558 |
| NdeI | CATATG | 1 cut(s) | 369 |
| NdeII | GATC | 1 cut(s) | 48 |
| NmuCI | GTSAC | 2 cut(s) | 89, 458 |
| PaeR7I | CTCGAG | 1 cut(s) | 260 |
| PdmI | GAANNNNTTC | 1 cut(s) | 546 |
| PfeI | GAWTC | 4 cut(s) | 243, 256, 377, 584 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 86 |
| PkrI | GCNGC | 2 cut(s) | 37, 322 |
| PleI | GAGTC | 3 cut(s) | 182, 355, 455 |
| PpsI | GAGTC | 3 cut(s) | 182, 355, 455 |
| Psp6I | CCWGG | 1 cut(s) | 270 |
| PspGI | CCWGG | 1 cut(s) | 270 |
| RsaI | GTAC | 1 cut(s) | 389 |
| RsaNI | GTAC | 1 cut(s) | 388 |
| RseI | CAYNNNNRTG | 2 cut(s) | 356, 372 |
| SaqAI | TTAA | 3 cut(s) | 137, 555, 563 |
| SatI | GCNGC | 2 cut(s) | 36, 321 |
| Sau3AI | GATC | 1 cut(s) | 48 |
| SchI | GAGTC | 3 cut(s) | 182, 355, 455 |
| ScrFI | CCNGG | 1 cut(s) | 272 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| Sfr274I | CTCGAG | 1 cut(s) | 260 |
| SlaI | CTCGAG | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 356, 372 |
| SmlI | CTYRAG | 3 cut(s) | 230, 260, 297 |
| SmoI | CTYRAG | 3 cut(s) | 230, 260, 297 |
| Sse9I | AATT | 2 cut(s) | 158, 569 |
| SsiI | CCGC | 2 cut(s) | 236, 502 |
| SspMI | CTAG | 2 cut(s) | 267, 479 |
| StyD4I | CCNGG | 1 cut(s) | 270 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaiI | ACGT | 3 cut(s) | 19, 32, 456 |
| TaqI | TCGA | 2 cut(s) | 261, 435 |
| TaqII | GACCGA | 1 cut(s) | 30 |
| TasI | AATT | 2 cut(s) | 158, 569 |
| TfiI | GAWTC | 4 cut(s) | 243, 256, 377, 584 |
| Tru1I | TTAA | 3 cut(s) | 137, 555, 563 |
| Tru9I | TTAA | 3 cut(s) | 137, 555, 563 |
| TseFI | GTSAC | 2 cut(s) | 89, 458 |
| TseI | GCWGC | 2 cut(s) | 35, 320 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 458 |
| TspDTI | ATGAA | 1 cut(s) | 413 |
| TspGWI | ACGGA | 1 cut(s) | 446 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 86 |
| XapI | RAATTY | 1 cut(s) | 569 |
| XhoI | CTCGAG | 1 cut(s) | 260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 546 |
| XspI | CTAG | 2 cut(s) | 267, 479 |