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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 383 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 476 |
| AccIII | TCCGGA | 2 cut(s) | 451, 666 |
| AciI | CCGC | 4 cut(s) | 136, 164, 167, 748 |
| AcoI | YGGCCR | 3 cut(s) | 137, 396, 645 |
| AcsI | RAATTY | 1 cut(s) | 472 |
| AfaI | GTAC | 1 cut(s) | 917 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 34, 129, 401, 451, 476, 598, 654, 666 |
| AflIII | ACRYGT | 1 cut(s) | 531 |
| AgsI | TTSAA | 1 cut(s) | 104 |
| AjiI | CACGTC | 3 cut(s) | 509, 534, 805 |
| AjnI | CCWGG | 2 cut(s) | 171, 798 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 957, 989 |
| AluBI | AGCT | 4 cut(s) | 314, 408, 824, 830 |
| AluI | AGCT | 4 cut(s) | 314, 408, 824, 830 |
| Alw26I | GTCTC | 4 cut(s) | 109, 259, 269, 961 |
| Ama87I | CYCGRG | 2 cut(s) | 272, 788 |
| Aor13HI | TCCGGA | 2 cut(s) | 451, 666 |
| AoxI | GGCC | 8 cut(s) | 24, 36, 137, 168, 192, 396, 645, 657 |
| ApeKI | GCWGC | 4 cut(s) | 314, 357, 422, 848 |
| ApoI | RAATTY | 1 cut(s) | 472 |
| AspS9I | GGNCC | 7 cut(s) | 25, 37, 169, 454, 482, 521, 657 |
| AsuC2I | CCSGG | 1 cut(s) | 181 |
| AsuHPI | GGTGA | 1 cut(s) | 434 |
| AvaI | CYCGRG | 2 cut(s) | 272, 788 |
| AvaII | GGWCC | 3 cut(s) | 454, 482, 521 |
| BanII | GRGCYC | 1 cut(s) | 15 |
| BbsI | GAAGAC | 2 cut(s) | 111, 942 |
| BbvI | GCAGC | 4 cut(s) | 301, 369, 434, 860 |
| BccI | CCATC | 4 cut(s) | 318, 442, 453, 884 |
| BceAI | ACGGC | 1 cut(s) | 51 |
| BciT130I | CCWGG | 2 cut(s) | 173, 800 |
| BcnI | CCSGG | 1 cut(s) | 181 |
| BcoDI | GTCTC | 4 cut(s) | 109, 259, 269, 961 |
| BfaI | CTAG | 4 cut(s) | 320, 419, 795, 1007 |
| BfmI | CTRYAG | 1 cut(s) | 765 |
| BfuAI | ACCTGC | 1 cut(s) | 383 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 857 |
| BisI | GCNGC | 7 cut(s) | 137, 165, 168, 315, 358, 423, 849 |
| BlsI | GCNGC | 7 cut(s) | 138, 166, 169, 316, 359, 424, 850 |
| Bme1390I | CCNGG | 3 cut(s) | 173, 181, 800 |
| Bme18I | GGWCC | 3 cut(s) | 454, 482, 521 |
| BmeT110I | CYCGRG | 2 cut(s) | 272, 788 |
| BmgBI | CACGTC | 3 cut(s) | 509, 534, 805 |
| BmgT120I | GGNCC | 7 cut(s) | 25, 37, 169, 454, 482, 521, 657 |
| BmiI | GGNNCC | 4 cut(s) | 12, 484, 522, 523 |
| BmrFI | CCNGG | 3 cut(s) | 173, 181, 800 |
| BmsI | GCATC | 1 cut(s) | 763 |
| BpiI | GAAGAC | 2 cut(s) | 111, 942 |
| BpmI | CTGGAG | 2 cut(s) | 359, 896 |
| BpuEI | CTTGAG | 4 cut(s) | 133, 352, 743, 810 |
| BpuMI | CCSGG | 1 cut(s) | 181 |
| BsaI | GGTCTC | 1 cut(s) | 961 |
| BsaJI | CCNNGG | 1 cut(s) | 171 |
| BsaWI | WCCGGW | 5 cut(s) | 221, 401, 451, 632, 666 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 34, 129, 401, 451, 476, 598, 654, 666 |
| Bse118I | RCCGGY | 3 cut(s) | 353, 394, 583 |
| Bse1I | ACTGG | 2 cut(s) | 718, 913 |
| BseAI | TCCGGA | 2 cut(s) | 451, 666 |
| BseBI | CCWGG | 2 cut(s) | 173, 800 |
| BseDI | CCNNGG | 1 cut(s) | 171 |
| BseGI | GGATG | 4 cut(s) | 329, 675, 879, 907 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 34, 129, 401, 451, 476, 598, 654, 666 |
| BseNI | ACTGG | 2 cut(s) | 718, 913 |
| BseRI | GAGGAG | 1 cut(s) | 356 |
| BseXI | GCAGC | 4 cut(s) | 301, 369, 434, 860 |
| BsgI | GTGCAG | 1 cut(s) | 300 |
| BshFI | GGCC | 8 cut(s) | 26, 38, 139, 170, 194, 398, 647, 659 |
| BsiHKCI | CYCGRG | 2 cut(s) | 272, 788 |
| BslFI | GGGAC | 1 cut(s) | 534 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 34, 129, 401, 451, 476, 598, 654, 666 |
| BsmAI | GTCTC | 4 cut(s) | 109, 259, 269, 961 |
| BsmFI | GGGAC | 1 cut(s) | 534 |
| BsnI | GGCC | 8 cut(s) | 26, 38, 139, 170, 194, 398, 647, 659 |
| Bso31I | GGTCTC | 1 cut(s) | 961 |
| BsoBI | CYCGRG | 2 cut(s) | 272, 788 |
| Bsp1286I | GDGCHC | 1 cut(s) | 15 |
| Bsp13I | TCCGGA | 2 cut(s) | 451, 666 |
| Bsp143I | GATC | 1 cut(s) | 284 |
| BspACI | CCGC | 4 cut(s) | 136, 164, 167, 748 |
| BspANI | GGCC | 8 cut(s) | 26, 38, 139, 170, 194, 398, 647, 659 |
| BspEI | TCCGGA | 2 cut(s) | 451, 666 |
| BspLI | GGNNCC | 4 cut(s) | 12, 484, 522, 523 |
| BspMI | ACCTGC | 1 cut(s) | 383 |
| BspTNI | GGTCTC | 1 cut(s) | 961 |
| BsrFI | RCCGGY | 3 cut(s) | 353, 394, 583 |
| BsrI | ACTGG | 2 cut(s) | 718, 913 |
| BssAI | RCCGGY | 3 cut(s) | 353, 394, 583 |
| BssECI | CCNNGG | 1 cut(s) | 171 |
| BssMI | GATC | 1 cut(s) | 284 |
| Bst2UI | CCWGG | 2 cut(s) | 173, 800 |
| Bst4CI | ACNGT | 3 cut(s) | 555, 562, 814 |
| BstC8I | GCNNGC | 2 cut(s) | 752, 822 |
| BstDEI | CTNAG | 1 cut(s) | 853 |
| BstF5I | GGATG | 4 cut(s) | 329, 675, 879, 907 |
| BstKTI | GATC | 1 cut(s) | 287 |
| BstMAI | GTCTC | 4 cut(s) | 109, 259, 269, 961 |
| BstMBI | GATC | 1 cut(s) | 284 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 497, 836, 845, 857, 866 |
| BstNI | CCWGG | 2 cut(s) | 173, 800 |
| BstSCI | CCNGG | 3 cut(s) | 171, 179, 798 |
| BstSFI | CTRYAG | 1 cut(s) | 765 |
| BstV1I | GCAGC | 4 cut(s) | 301, 369, 434, 860 |
| BstV2I | GAAGAC | 2 cut(s) | 111, 942 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 22 |
| BsuRI | GGCC | 8 cut(s) | 26, 38, 139, 170, 194, 398, 647, 659 |
| BtrI | CACGTC | 3 cut(s) | 509, 534, 805 |
| BtsCI | GGATG | 4 cut(s) | 329, 675, 879, 907 |
| BtsI | GCAGTG | 2 cut(s) | 486, 500 |
| BtsIMutI | CAGTG | 3 cut(s) | 486, 500, 525 |
| BveI | ACCTGC | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 2 cut(s) | 752, 822 |
| Cfr10I | RCCGGY | 3 cut(s) | 353, 394, 583 |
| Cfr13I | GGNCC | 7 cut(s) | 25, 37, 169, 454, 482, 521, 657 |
| CseI | GACGC | 1 cut(s) | 211 |
| Csp6I | GTAC | 1 cut(s) | 916 |
| CviAII | CATG | 2 cut(s) | 209, 288 |
| CviQI | GTAC | 1 cut(s) | 916 |
| DdeI | CTNAG | 1 cut(s) | 853 |
| DpnI | GATC | 1 cut(s) | 286 |
| DpnII | GATC | 1 cut(s) | 284 |
| EaeI | YGGCCR | 3 cut(s) | 137, 396, 645 |
| EciI | GGCGGA | 1 cut(s) | 737 |
| Eco24I | GRGCYC | 1 cut(s) | 15 |
| Eco31I | GGTCTC | 1 cut(s) | 961 |
| Eco32I | GATATC | 2 cut(s) | 725, 745 |
| Eco47I | GGWCC | 3 cut(s) | 454, 482, 521 |
| Eco88I | CYCGRG | 2 cut(s) | 272, 788 |
| EcoO109I | RGGNCCY | 2 cut(s) | 482, 521 |
| EcoRII | CCWGG | 2 cut(s) | 171, 798 |
| EcoRV | GATATC | 2 cut(s) | 725, 745 |
| EcoT38I | GRGCYC | 1 cut(s) | 15 |
| FaeI | CATG | 2 cut(s) | 212, 291 |
| FaqI | GGGAC | 1 cut(s) | 534 |
| FatI | CATG | 2 cut(s) | 208, 287 |
| FauNDI | CATATG | 1 cut(s) | 897 |
| Fnu4HI | GCNGC | 7 cut(s) | 137, 165, 168, 315, 358, 423, 849 |
| FokI | GGATG | 4 cut(s) | 336, 682, 866, 914 |
| FriOI | GRGCYC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 7 cut(s) | 137, 165, 168, 315, 358, 423, 849 |
| FspBI | CTAG | 4 cut(s) | 320, 419, 795, 1007 |
| GluI | GCNGC | 7 cut(s) | 137, 165, 168, 315, 358, 423, 849 |
| GsuI | CTGGAG | 2 cut(s) | 359, 896 |
| HaeIII | GGCC | 8 cut(s) | 26, 38, 139, 170, 194, 398, 647, 659 |
| HgaI | GACGC | 1 cut(s) | 211 |
| Hin1II | CATG | 2 cut(s) | 212, 291 |
| HincII | GTYRAC | 4 cut(s) | 544, 558, 579, 589 |
| HindII | GTYRAC | 4 cut(s) | 544, 558, 579, 589 |
| HindIII | AAGCTT | 1 cut(s) | 828 |
| HinfI | GANTC | 8 cut(s) | 176, 270, 344, 771, 784, 889, 905, 989 |
| HphI | GGTGA | 1 cut(s) | 434 |
| Hpy166II | GTNNAC | 5 cut(s) | 442, 544, 558, 579, 589 |
| Hpy188I | TCNGA | 4 cut(s) | 10, 461, 538, 566 |
| Hpy8I | GTNNAC | 5 cut(s) | 442, 544, 558, 579, 589 |
| HpyAV | CCTTC | 1 cut(s) | 939 |
| HpyCH4III | ACNGT | 3 cut(s) | 555, 562, 814 |
| HpyCH4IV | ACGT | 4 cut(s) | 508, 533, 804, 981 |
| HpyCH4V | TGCA | 1 cut(s) | 317 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 497, 836, 845, 857, 866 |
| HpyF3I | CTNAG | 1 cut(s) | 853 |
| HpySE526I | ACGT | 4 cut(s) | 508, 533, 804, 981 |
| Hsp92II | CATG | 2 cut(s) | 212, 291 |
| KflI | GGGWCCC | 1 cut(s) | 521 |
| Kpn2I | TCCGGA | 2 cut(s) | 451, 666 |
| Kzo9I | GATC | 1 cut(s) | 284 |
| LmnI | GCTCC | 4 cut(s) | 10, 294, 703, 915 |
| Lsp1109I | GCAGC | 4 cut(s) | 301, 369, 434, 860 |
| LweI | GCATC | 1 cut(s) | 763 |
| MaeI | CTAG | 4 cut(s) | 320, 419, 795, 1007 |
| MaeII | ACGT | 4 cut(s) | 508, 533, 804, 981 |
| MaeIII | GTNAC | 6 cut(s) | 263, 299, 612, 635, 674, 986 |
| MalI | GATC | 1 cut(s) | 286 |
| MboI | GATC | 1 cut(s) | 284 |
| MboII | GAAGA | 7 cut(s) | 70, 84, 116, 440, 944, 947, 977 |
| MhlI | GDGCHC | 1 cut(s) | 15 |
| MluCI | AATT | 4 cut(s) | 99, 142, 472, 686 |
| MlyI | GAGTC | 4 cut(s) | 264, 353, 883, 983 |
| MnlI | CCTC | 9 cut(s) | 205, 221, 334, 376, 467, 473, 532, 560, 850 |
| MroI | TCCGGA | 2 cut(s) | 451, 666 |
| MslI | CAYNNNNRTG | 3 cut(s) | 322, 884, 900 |
| MspR9I | CCNGG | 3 cut(s) | 173, 181, 800 |
| MvaI | CCWGG | 2 cut(s) | 173, 800 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 497, 836, 845, 857, 866 |
| NciI | CCSGG | 1 cut(s) | 181 |
| NdeI | CATATG | 1 cut(s) | 897 |
| NdeII | GATC | 1 cut(s) | 284 |
| NlaIII | CATG | 2 cut(s) | 212, 291 |
| NlaIV | GGNNCC | 4 cut(s) | 12, 484, 522, 523 |
| NmuCI | GTSAC | 4 cut(s) | 263, 299, 612, 986 |
| PaeR7I | CTCGAG | 2 cut(s) | 272, 788 |
| PfeI | GAWTC | 4 cut(s) | 176, 771, 784, 905 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 476 |
| PkrI | GCNGC | 7 cut(s) | 138, 166, 169, 316, 359, 424, 850 |
| PleI | GAGTC | 4 cut(s) | 264, 352, 883, 983 |
| PpsI | GAGTC | 4 cut(s) | 264, 352, 883, 983 |
| PpuMI | RGGWCCY | 2 cut(s) | 482, 521 |
| Psp5II | RGGWCCY | 2 cut(s) | 482, 521 |
| Psp6I | CCWGG | 2 cut(s) | 171, 798 |
| PspGI | CCWGG | 2 cut(s) | 171, 798 |
| PspN4I | GGNNCC | 4 cut(s) | 12, 484, 522, 523 |
| PspPI | GGNCC | 7 cut(s) | 25, 37, 169, 454, 482, 521, 657 |
| PspPPI | RGGWCCY | 2 cut(s) | 482, 521 |
| RsaI | GTAC | 1 cut(s) | 917 |
| RsaNI | GTAC | 1 cut(s) | 916 |
| RseI | CAYNNNNRTG | 3 cut(s) | 322, 884, 900 |
| SatI | GCNGC | 7 cut(s) | 137, 165, 168, 315, 358, 423, 849 |
| Sau3AI | GATC | 1 cut(s) | 284 |
| Sau96I | GGNCC | 7 cut(s) | 25, 37, 169, 454, 482, 521, 657 |
| SchI | GAGTC | 4 cut(s) | 264, 353, 883, 983 |
| ScrFI | CCNGG | 3 cut(s) | 173, 181, 800 |
| SduI | GDGCHC | 1 cut(s) | 15 |
| SfaNI | GCATC | 1 cut(s) | 763 |
| SfcI | CTRYAG | 1 cut(s) | 765 |
| Sfr274I | CTCGAG | 2 cut(s) | 272, 788 |
| SinI | GGWCC | 3 cut(s) | 454, 482, 521 |
| SlaI | CTCGAG | 2 cut(s) | 272, 788 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 322, 884, 900 |
| SmlI | CTYRAG | 6 cut(s) | 112, 272, 367, 758, 788, 825 |
| SmoI | CTYRAG | 6 cut(s) | 112, 272, 367, 758, 788, 825 |
| Sse9I | AATT | 4 cut(s) | 99, 142, 472, 686 |
| SsiI | CCGC | 4 cut(s) | 136, 164, 167, 748 |
| SspI | AATATT | 1 cut(s) | 430 |
| SspMI | CTAG | 4 cut(s) | 320, 419, 795, 1007 |
| StyD4I | CCNGG | 3 cut(s) | 171, 179, 798 |
| TaaI | ACNGT | 3 cut(s) | 555, 562, 814 |
| TaiI | ACGT | 4 cut(s) | 511, 536, 807, 984 |
| TaqI | TCGA | 4 cut(s) | 247, 273, 789, 963 |
| TasI | AATT | 4 cut(s) | 99, 142, 472, 686 |
| TauI | GCSGC | 3 cut(s) | 139, 167, 170 |
| TfiI | GAWTC | 4 cut(s) | 176, 771, 784, 905 |
| TscAI | CASTG | 3 cut(s) | 493, 507, 532 |
| TseFI | GTSAC | 4 cut(s) | 263, 299, 612, 986 |
| TseI | GCWGC | 4 cut(s) | 314, 357, 422, 848 |
| Tsp45I | GTSAC | 4 cut(s) | 263, 299, 612, 986 |
| TspDTI | ATGAA | 2 cut(s) | 941, 945 |
| TspGWI | ACGGA | 2 cut(s) | 214, 974 |
| TspRI | CASTG | 3 cut(s) | 493, 507, 532 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 3 cut(s) | 454, 482, 521 |
| XapI | RAATTY | 1 cut(s) | 472 |
| XhoI | CTCGAG | 2 cut(s) | 272, 788 |
| XspI | CTAG | 4 cut(s) | 320, 419, 795, 1007 |