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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 537 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 548, 731 |
| AccIII | TCCGGA | 1 cut(s) | 457 |
| AciI | CCGC | 1 cut(s) | 340 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AclWI | GGATC | 2 cut(s) | 699, 723 |
| AfaI | GTAC | 1 cut(s) | 635 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 241, 488, 548, 559, 731 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 4 cut(s) | 13, 22, 167, 355 |
| AhlI | ACTAGT | 1 cut(s) | 125 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 155, 179, 383 |
| AluI | AGCT | 3 cut(s) | 155, 179, 383 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 589 |
| Alw26I | GTCTC | 2 cut(s) | 32, 116 |
| Alw44I | GTGCAC | 1 cut(s) | 585 |
| AlwI | GGATC | 2 cut(s) | 699, 723 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 731 |
| Aor13HI | TCCGGA | 1 cut(s) | 457 |
| AoxI | GGCC | 2 cut(s) | 550, 721 |
| ApaLI | GTGCAC | 1 cut(s) | 585 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| AspLEI | GCGC | 3 cut(s) | 81, 220, 479 |
| AspS9I | GGNCC | 4 cut(s) | 67, 539, 551, 722 |
| AsuC2I | CCSGG | 1 cut(s) | 607 |
| AvaII | GGWCC | 2 cut(s) | 67, 539 |
| BaeGI | GKGCMC | 1 cut(s) | 589 |
| BauI | CACGAG | 1 cut(s) | 437 |
| BbsI | GAAGAC | 2 cut(s) | 252, 711 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 589 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 6 cut(s) | 92, 122, 321, 397, 557, 674 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcnI | CCSGG | 1 cut(s) | 607 |
| BcoDI | GTCTC | 2 cut(s) | 32, 116 |
| BcuI | ACTAGT | 1 cut(s) | 125 |
| BfaI | CTAG | 4 cut(s) | 126, 252, 432, 528 |
| BfmI | CTRYAG | 1 cut(s) | 469 |
| BfoI | RGCGCY | 1 cut(s) | 480 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 1 cut(s) | 607 |
| Bme18I | GGWCC | 2 cut(s) | 67, 539 |
| BmgT120I | GGNCC | 4 cut(s) | 67, 539, 551, 722 |
| BmiI | GGNNCC | 2 cut(s) | 68, 593 |
| BmrFI | CCNGG | 1 cut(s) | 607 |
| BmsI | GCATC | 2 cut(s) | 205, 611 |
| BpiI | GAAGAC | 2 cut(s) | 252, 711 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BpuMI | CCSGG | 1 cut(s) | 607 |
| BsaBI | GATNNNNATC | 3 cut(s) | 567, 684, 690 |
| BsaJI | CCNNGG | 3 cut(s) | 415, 483, 595 |
| BsaWI | WCCGGW | 1 cut(s) | 457 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 241, 488, 548, 559, 731 |
| Bse1I | ACTGG | 3 cut(s) | 39, 49, 736 |
| Bse8I | GATNNNNATC | 3 cut(s) | 567, 684, 690 |
| BseAI | TCCGGA | 1 cut(s) | 457 |
| BseDI | CCNNGG | 3 cut(s) | 415, 483, 595 |
| BseGI | GGATG | 3 cut(s) | 114, 568, 602 |
| BseJI | GATNNNNATC | 3 cut(s) | 567, 684, 690 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 241, 488, 548, 559, 731 |
| BseNI | ACTGG | 3 cut(s) | 39, 49, 736 |
| BseSI | GKGCMC | 1 cut(s) | 589 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| BshFI | GGCC | 2 cut(s) | 552, 723 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 589 |
| BsiSI | CCGG | 2 cut(s) | 458, 607 |
| BslFI | GGGAC | 1 cut(s) | 533 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 241, 488, 548, 559, 731 |
| BsmAI | GTCTC | 2 cut(s) | 32, 116 |
| BsmFI | GGGAC | 1 cut(s) | 533 |
| BsnI | GGCC | 2 cut(s) | 552, 723 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 589 |
| Bsp13I | TCCGGA | 1 cut(s) | 457 |
| Bsp143I | GATC | 4 cut(s) | 673, 685, 691, 715 |
| Bsp19I | CCATGG | 1 cut(s) | 415 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspANI | GGCC | 2 cut(s) | 552, 723 |
| BspEI | TCCGGA | 1 cut(s) | 457 |
| BspHI | TCATGA | 1 cut(s) | 295 |
| BspLI | GGNNCC | 2 cut(s) | 68, 593 |
| BspPI | GGATC | 2 cut(s) | 699, 723 |
| BspQI | GCTCTTC | 1 cut(s) | 390 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 3 cut(s) | 39, 49, 736 |
| BssECI | CCNNGG | 3 cut(s) | 415, 483, 595 |
| BssMI | GATC | 4 cut(s) | 673, 685, 691, 715 |
| BssSI | CACGAG | 1 cut(s) | 437 |
| BssT1I | CCWWGG | 2 cut(s) | 415, 483 |
| Bst2BI | CACGAG | 1 cut(s) | 437 |
| Bst4CI | ACNGT | 2 cut(s) | 596, 638 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 585 |
| BstDEI | CTNAG | 4 cut(s) | 25, 447, 510, 695 |
| BstDSI | CCRYGG | 2 cut(s) | 415, 595 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 3 cut(s) | 114, 568, 602 |
| BstH2I | RGCGCY | 1 cut(s) | 480 |
| BstHHI | GCGC | 3 cut(s) | 81, 220, 479 |
| BstKTI | GATC | 4 cut(s) | 676, 688, 694, 718 |
| BstMAI | GTCTC | 2 cut(s) | 32, 116 |
| BstMBI | GATC | 4 cut(s) | 673, 685, 691, 715 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 650 |
| BstSCI | CCNGG | 1 cut(s) | 605 |
| BstSFI | CTRYAG | 1 cut(s) | 469 |
| BstSLI | GKGCMC | 1 cut(s) | 589 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 711 |
| BstX2I | RGATCY | 1 cut(s) | 691 |
| BstYI | RGATCY | 1 cut(s) | 691 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 2 cut(s) | 552, 723 |
| BtgI | CCRYGG | 2 cut(s) | 415, 595 |
| BtsCI | GGATG | 3 cut(s) | 114, 568, 602 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 585 |
| CaiI | CAGNNNCTG | 1 cut(s) | 731 |
| CciI | TCATGA | 1 cut(s) | 295 |
| CfoI | GCGC | 3 cut(s) | 81, 220, 479 |
| Cfr13I | GGNCC | 4 cut(s) | 67, 539, 551, 722 |
| CseI | GACGC | 1 cut(s) | 501 |
| Csp6I | GTAC | 1 cut(s) | 634 |
| CviAII | CATG | 4 cut(s) | 208, 296, 416, 661 |
| CviJI | RGCY | 7 cut(s) | 155, 179, 185, 336, 383, 552, 723 |
| CviKI_1 | RGCY | 7 cut(s) | 155, 179, 185, 336, 383, 552, 723 |
| CviQI | GTAC | 1 cut(s) | 634 |
| DdeI | CTNAG | 4 cut(s) | 25, 447, 510, 695 |
| DpnI | GATC | 4 cut(s) | 675, 687, 693, 717 |
| DpnII | GATC | 4 cut(s) | 673, 685, 691, 715 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 537 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 537 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| Eco130I | CCWWGG | 2 cut(s) | 415, 483 |
| Eco47I | GGWCC | 2 cut(s) | 67, 539 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 2 cut(s) | 415, 483 |
| ErhI | CCWWGG | 2 cut(s) | 415, 483 |
| FaeI | CATG | 4 cut(s) | 211, 299, 419, 664 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 533 |
| FatI | CATG | 4 cut(s) | 207, 295, 415, 660 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 3 cut(s) | 101, 575, 589 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 4 cut(s) | 126, 252, 432, 528 |
| GlaI | GCGC | 3 cut(s) | 80, 219, 478 |
| GluI | GCNGC | 1 cut(s) | 278 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 1 cut(s) | 480 |
| HaeIII | GGCC | 2 cut(s) | 552, 723 |
| HapII | CCGG | 2 cut(s) | 458, 607 |
| HgaI | GACGC | 1 cut(s) | 501 |
| HhaI | GCGC | 3 cut(s) | 81, 220, 479 |
| Hin1II | CATG | 4 cut(s) | 211, 299, 419, 664 |
| Hin6I | GCGC | 3 cut(s) | 79, 218, 477 |
| HinP1I | GCGC | 3 cut(s) | 79, 218, 477 |
| HinfI | GANTC | 3 cut(s) | 299, 435, 461 |
| HpaII | CCGG | 2 cut(s) | 458, 607 |
| Hpy166II | GTNNAC | 1 cut(s) | 587 |
| Hpy188I | TCNGA | 2 cut(s) | 71, 132 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 296, 311, 458, 528, 677, 689 |
| Hpy8I | GTNNAC | 1 cut(s) | 587 |
| HpyCH4III | ACNGT | 2 cut(s) | 596, 638 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 291, 532 |
| HpyCH4V | TGCA | 4 cut(s) | 50, 587, 617, 711 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 650 |
| HpyF3I | CTNAG | 4 cut(s) | 25, 447, 510, 695 |
| HpySE526I | ACGT | 3 cut(s) | 135, 291, 532 |
| Hsp92II | CATG | 4 cut(s) | 211, 299, 419, 664 |
| HspAI | GCGC | 3 cut(s) | 79, 218, 477 |
| Kpn2I | TCCGGA | 1 cut(s) | 457 |
| Kzo9I | GATC | 4 cut(s) | 673, 685, 691, 715 |
| LguI | GCTCTTC | 1 cut(s) | 390 |
| LmnI | GCTCC | 3 cut(s) | 225, 499, 599 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| LweI | GCATC | 2 cut(s) | 205, 611 |
| MaeI | CTAG | 4 cut(s) | 126, 252, 432, 528 |
| MaeII | ACGT | 3 cut(s) | 135, 291, 532 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 4 cut(s) | 675, 687, 693, 717 |
| MboI | GATC | 4 cut(s) | 673, 685, 691, 715 |
| MboII | GAAGA | 5 cut(s) | 179, 257, 377, 683, 716 |
| MflI | RGATCY | 1 cut(s) | 691 |
| MhlI | GDGCHC | 2 cut(s) | 141, 589 |
| MluCI | AATT | 2 cut(s) | 189, 523 |
| MlyI | GAGTC | 3 cut(s) | 293, 429, 470 |
| MnlI | CCTC | 6 cut(s) | 245, 347, 482, 553, 573, 643 |
| MroI | TCCGGA | 1 cut(s) | 457 |
| MseI | TTAA | 2 cut(s) | 90, 745 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 458, 607 |
| MspR9I | CCNGG | 1 cut(s) | 607 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 650 |
| NciI | CCSGG | 1 cut(s) | 607 |
| NcoI | CCATGG | 1 cut(s) | 415 |
| NdeII | GATC | 4 cut(s) | 673, 685, 691, 715 |
| NlaIII | CATG | 4 cut(s) | 211, 299, 419, 664 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 593 |
| PagI | TCATGA | 1 cut(s) | 295 |
| PciSI | GCTCTTC | 1 cut(s) | 390 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 499 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 548, 731 |
| PfoI | TCCNGGA | 1 cut(s) | 605 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 3 cut(s) | 293, 429, 469 |
| PpsI | GAGTC | 3 cut(s) | 293, 429, 469 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 593 |
| PspPI | GGNCC | 4 cut(s) | 67, 539, 551, 722 |
| PstNI | CAGNNNCTG | 1 cut(s) | 731 |
| PsuI | RGATCY | 1 cut(s) | 691 |
| RsaI | GTAC | 1 cut(s) | 635 |
| RsaNI | GTAC | 1 cut(s) | 634 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SapI | GCTCTTC | 1 cut(s) | 390 |
| SaqAI | TTAA | 2 cut(s) | 90, 745 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 4 cut(s) | 673, 685, 691, 715 |
| Sau96I | GGNCC | 4 cut(s) | 67, 539, 551, 722 |
| SchI | GAGTC | 3 cut(s) | 293, 429, 470 |
| ScrFI | CCNGG | 1 cut(s) | 607 |
| SduI | GDGCHC | 2 cut(s) | 141, 589 |
| SetI | ASST | 9 cut(s) | 65, 96, 138, 157, 181, 237, 294, 385, 535 |
| SfaNI | GCATC | 2 cut(s) | 205, 611 |
| SfcI | CTRYAG | 1 cut(s) | 469 |
| SinI | GGWCC | 2 cut(s) | 67, 539 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 2 cut(s) | 89, 272 |
| SmoI | CTYRAG | 2 cut(s) | 89, 272 |
| SpeI | ACTAGT | 1 cut(s) | 125 |
| Sse9I | AATT | 2 cut(s) | 189, 523 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspMI | CTAG | 4 cut(s) | 126, 252, 432, 528 |
| StyD4I | CCNGG | 1 cut(s) | 605 |
| StyI | CCWWGG | 2 cut(s) | 415, 483 |
| TaaI | ACNGT | 2 cut(s) | 596, 638 |
| TaiI | ACGT | 3 cut(s) | 138, 294, 535 |
| TaqI | TCGA | 1 cut(s) | 377 |
| TasI | AATT | 2 cut(s) | 189, 523 |
| Tru1I | TTAA | 2 cut(s) | 90, 745 |
| Tru9I | TTAA | 2 cut(s) | 90, 745 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseI | GCWGC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 3 cut(s) | 224, 284, 377 |
| TspGWI | ACGGA | 1 cut(s) | 604 |
| TspRI | CASTG | 1 cut(s) | 39 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 548, 731 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 585 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 539 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XbaI | TCTAGA | 1 cut(s) | 527 |
| XspI | CTAG | 4 cut(s) | 126, 252, 432, 528 |