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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 1 cut(s) | 245 |
| AccII | CGCG | 1 cut(s) | 345 |
| AciI | CCGC | 2 cut(s) | 37, 439 |
| AcsI | RAATTY | 1 cut(s) | 104 |
| AfaI | GTAC | 2 cut(s) | 60, 454 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 427, 770 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 1 cut(s) | 263 |
| AjnI | CCWGG | 1 cut(s) | 613 |
| AluBI | AGCT | 1 cut(s) | 238 |
| AluI | AGCT | 1 cut(s) | 238 |
| AoxI | GGCC | 1 cut(s) | 493 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 81 |
| AspLEI | GCGC | 1 cut(s) | 347 |
| AspS9I | GGNCC | 1 cut(s) | 407 |
| AvaII | GGWCC | 1 cut(s) | 407 |
| BanI | GGYRCC | 1 cut(s) | 245 |
| BbsI | GAAGAC | 2 cut(s) | 152, 750 |
| BccI | CCATC | 5 cut(s) | 94, 173, 546, 584, 713 |
| BciT130I | CCWGG | 1 cut(s) | 615 |
| BfaI | CTAG | 3 cut(s) | 213, 300, 555 |
| Bme1390I | CCNGG | 1 cut(s) | 615 |
| Bme18I | GGWCC | 1 cut(s) | 407 |
| BmgT120I | GGNCC | 1 cut(s) | 407 |
| BmiI | GGNNCC | 3 cut(s) | 247, 313, 576 |
| BmrFI | CCNGG | 1 cut(s) | 615 |
| BmsI | GCATC | 3 cut(s) | 206, 228, 650 |
| BpiI | GAAGAC | 2 cut(s) | 152, 750 |
| BsaBI | GATNNNNATC | 4 cut(s) | 137, 594, 723, 729 |
| BsaJI | CCNNGG | 2 cut(s) | 351, 463 |
| BsaWI | WCCGGW | 1 cut(s) | 503 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 427, 770 |
| Bse1I | ACTGG | 1 cut(s) | 305 |
| Bse8I | GATNNNNATC | 4 cut(s) | 137, 594, 723, 729 |
| BseBI | CCWGG | 1 cut(s) | 615 |
| BseDI | CCNNGG | 2 cut(s) | 351, 463 |
| BseGI | GGATG | 2 cut(s) | 538, 641 |
| BseJI | GATNNNNATC | 4 cut(s) | 137, 594, 723, 729 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 427, 770 |
| BseNI | ACTGG | 1 cut(s) | 305 |
| Bsh1236I | CGCG | 1 cut(s) | 345 |
| BshFI | GGCC | 1 cut(s) | 495 |
| BshNI | GGYRCC | 1 cut(s) | 245 |
| BsiSI | CCGG | 1 cut(s) | 504 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 427, 770 |
| BsnI | GGCC | 1 cut(s) | 495 |
| Bsp143I | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| BspACI | CCGC | 2 cut(s) | 37, 439 |
| BspANI | GGCC | 1 cut(s) | 495 |
| BspFNI | CGCG | 1 cut(s) | 345 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 3 cut(s) | 247, 313, 576 |
| BspT107I | GGYRCC | 1 cut(s) | 245 |
| BsrI | ACTGG | 1 cut(s) | 305 |
| BssECI | CCNNGG | 2 cut(s) | 351, 463 |
| BssMI | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| BssT1I | CCWWGG | 1 cut(s) | 351 |
| Bst2UI | CCWGG | 1 cut(s) | 615 |
| Bst4CI | ACNGT | 1 cut(s) | 464 |
| Bst6I | CTCTTC | 1 cut(s) | 476 |
| BstDEI | CTNAG | 4 cut(s) | 13, 378, 599, 734 |
| BstDSI | CCRYGG | 1 cut(s) | 463 |
| BstF5I | GGATG | 2 cut(s) | 538, 641 |
| BstFNI | CGCG | 1 cut(s) | 345 |
| BstHHI | GCGC | 1 cut(s) | 347 |
| BstKTI | GATC | 5 cut(s) | 141, 569, 715, 727, 733 |
| BstMBI | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 638, 689 |
| BstNI | CCWGG | 1 cut(s) | 615 |
| BstSCI | CCNGG | 1 cut(s) | 613 |
| BstUI | CGCG | 1 cut(s) | 345 |
| BstV2I | GAAGAC | 2 cut(s) | 152, 750 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 590, 621 |
| BsuRI | GGCC | 1 cut(s) | 495 |
| BtgI | CCRYGG | 1 cut(s) | 463 |
| BtsCI | GGATG | 2 cut(s) | 538, 641 |
| BtsIMutI | CAGTG | 2 cut(s) | 123, 312 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 1 cut(s) | 407 |
| Csp6I | GTAC | 2 cut(s) | 59, 453 |
| CviAII | CATG | 3 cut(s) | 233, 250, 700 |
| CviJI | RGCY | 4 cut(s) | 33, 238, 495, 500 |
| CviKI_1 | RGCY | 4 cut(s) | 33, 238, 495, 500 |
| CviQI | GTAC | 2 cut(s) | 59, 453 |
| DdeI | CTNAG | 4 cut(s) | 13, 378, 599, 734 |
| DpnI | GATC | 5 cut(s) | 140, 568, 714, 726, 732 |
| DpnII | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 476 |
| EarI | CTCTTC | 1 cut(s) | 476 |
| Eco130I | CCWWGG | 1 cut(s) | 351 |
| Eco32I | GATATC | 1 cut(s) | 391 |
| Eco47I | GGWCC | 1 cut(s) | 407 |
| EcoRI | GAATTC | 1 cut(s) | 104 |
| EcoRII | CCWGG | 1 cut(s) | 613 |
| EcoRV | GATATC | 1 cut(s) | 391 |
| EcoT14I | CCWWGG | 1 cut(s) | 351 |
| EcoT22I | ATGCAT | 1 cut(s) | 221 |
| ErhI | CCWWGG | 1 cut(s) | 351 |
| FaeI | CATG | 3 cut(s) | 236, 253, 703 |
| FatI | CATG | 3 cut(s) | 232, 249, 699 |
| FokI | GGATG | 2 cut(s) | 525, 628 |
| FspBI | CTAG | 3 cut(s) | 213, 300, 555 |
| GlaI | GCGC | 1 cut(s) | 346 |
| HaeIII | GGCC | 1 cut(s) | 495 |
| HapII | CCGG | 1 cut(s) | 504 |
| HhaI | GCGC | 1 cut(s) | 347 |
| Hin1II | CATG | 3 cut(s) | 236, 253, 703 |
| Hin6I | GCGC | 1 cut(s) | 345 |
| HinP1I | GCGC | 1 cut(s) | 345 |
| HinfI | GANTC | 3 cut(s) | 148, 329, 754 |
| HpaII | CCGG | 1 cut(s) | 504 |
| Hpy166II | GTNNAC | 3 cut(s) | 113, 455, 608 |
| Hpy188I | TCNGA | 2 cut(s) | 198, 328 |
| Hpy188III | TCNNGA | 9 cut(s) | 8, 142, 233, 300, 396, 677, 716, 728, 758 |
| Hpy8I | GTNNAC | 3 cut(s) | 113, 455, 608 |
| HpyAV | CCTTC | 1 cut(s) | 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 464 |
| HpyCH4IV | ACGT | 4 cut(s) | 255, 400, 451, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 173, 219, 656 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 638, 689 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 378, 599, 734 |
| HpySE526I | ACGT | 4 cut(s) | 255, 400, 451, 475 |
| Hsp92II | CATG | 3 cut(s) | 236, 253, 703 |
| HspAI | GCGC | 1 cut(s) | 345 |
| Kzo9I | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| LmnI | GCTCC | 1 cut(s) | 367 |
| LweI | GCATC | 3 cut(s) | 206, 228, 650 |
| MaeI | CTAG | 3 cut(s) | 213, 300, 555 |
| MaeII | ACGT | 4 cut(s) | 255, 400, 451, 475 |
| MaeIII | GTNAC | 1 cut(s) | 515 |
| MalI | GATC | 5 cut(s) | 140, 568, 714, 726, 732 |
| MboI | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| MboII | GAAGA | 4 cut(s) | 157, 493, 722, 755 |
| MluCI | AATT | 6 cut(s) | 70, 104, 240, 321, 334, 694 |
| MlyI | GAGTC | 2 cut(s) | 142, 338 |
| Mph1103I | ATGCAT | 1 cut(s) | 221 |
| MroXI | GAANNNNTTC | 1 cut(s) | 81 |
| MseI | TTAA | 2 cut(s) | 51, 784 |
| MslI | CAYNNNNRTG | 2 cut(s) | 281, 588 |
| MspI | CCGG | 1 cut(s) | 504 |
| MspR9I | CCNGG | 1 cut(s) | 615 |
| MvaI | CCWGG | 1 cut(s) | 615 |
| MvnI | CGCG | 1 cut(s) | 345 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 638, 689 |
| NdeII | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| NlaIII | CATG | 3 cut(s) | 236, 253, 703 |
| NlaIV | GGNNCC | 3 cut(s) | 247, 313, 576 |
| NsiI | ATGCAT | 1 cut(s) | 221 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PdmI | GAANNNNTTC | 1 cut(s) | 81 |
| PfeI | GAWTC | 1 cut(s) | 754 |
| PleI | GAGTC | 2 cut(s) | 142, 337 |
| PpsI | GAGTC | 2 cut(s) | 142, 337 |
| Psp6I | CCWGG | 1 cut(s) | 613 |
| PspGI | CCWGG | 1 cut(s) | 613 |
| PspN4I | GGNNCC | 3 cut(s) | 247, 313, 576 |
| PspPI | GGNCC | 1 cut(s) | 407 |
| RsaI | GTAC | 2 cut(s) | 60, 454 |
| RsaNI | GTAC | 2 cut(s) | 59, 453 |
| RseI | CAYNNNNRTG | 2 cut(s) | 281, 588 |
| SaqAI | TTAA | 2 cut(s) | 51, 784 |
| Sau3AI | GATC | 5 cut(s) | 138, 566, 712, 724, 730 |
| Sau96I | GGNCC | 1 cut(s) | 407 |
| SchI | GAGTC | 2 cut(s) | 142, 338 |
| ScrFI | CCNGG | 1 cut(s) | 615 |
| SetI | ASST | 6 cut(s) | 240, 258, 403, 454, 478, 580 |
| SfaNI | GCATC | 3 cut(s) | 206, 228, 650 |
| SinI | GGWCC | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 281, 588 |
| Sse9I | AATT | 6 cut(s) | 70, 104, 240, 321, 334, 694 |
| SsiI | CCGC | 2 cut(s) | 37, 439 |
| SspMI | CTAG | 3 cut(s) | 213, 300, 555 |
| StyD4I | CCNGG | 1 cut(s) | 613 |
| StyI | CCWWGG | 1 cut(s) | 351 |
| TaaI | ACNGT | 1 cut(s) | 464 |
| TaiI | ACGT | 4 cut(s) | 258, 403, 454, 478 |
| TaqI | TCGA | 3 cut(s) | 141, 565, 729 |
| TasI | AATT | 6 cut(s) | 70, 104, 240, 321, 334, 694 |
| TatI | WGTACW | 1 cut(s) | 58 |
| TfiI | GAWTC | 1 cut(s) | 754 |
| Tru1I | TTAA | 2 cut(s) | 51, 784 |
| Tru9I | TTAA | 2 cut(s) | 51, 784 |
| TscAI | CASTG | 2 cut(s) | 130, 312 |
| TspDTI | ATGAA | 2 cut(s) | 221, 266 |
| TspRI | CASTG | 2 cut(s) | 130, 312 |
| VpaK11BI | GGWCC | 1 cut(s) | 407 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XbaI | TCTAGA | 1 cut(s) | 299 |
| XmnI | GAANNNNTTC | 1 cut(s) | 81 |
| XspI | CTAG | 3 cut(s) | 213, 300, 555 |
| Zsp2I | ATGCAT | 1 cut(s) | 221 |