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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 651 |
| AciI | CCGC | 4 cut(s) | 79, 95, 361, 905 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcoI | YGGCCR | 1 cut(s) | 751 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 2 cut(s) | 376, 802 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AleI | CACNNNNGTG | 1 cut(s) | 452 |
| AluBI | AGCT | 5 cut(s) | 155, 562, 572, 886, 937 |
| AluI | AGCT | 5 cut(s) | 155, 562, 572, 886, 937 |
| Alw21I | GWGCWC | 2 cut(s) | 564, 888 |
| Alw26I | GTCTC | 3 cut(s) | 182, 292, 496 |
| AlwI | GGATC | 1 cut(s) | 621 |
| AoxI | GGCC | 1 cut(s) | 751 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 808 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 1 cut(s) | 894 |
| AvaII | GGWCC | 1 cut(s) | 653 |
| BaeGI | GKGCMC | 1 cut(s) | 873 |
| BalI | TGGCCA | 1 cut(s) | 753 |
| BanII | GRGCYC | 2 cut(s) | 564, 888 |
| BauI | CACGAG | 1 cut(s) | 887 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 2 cut(s) | 564, 888 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 496, 792 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BclI | TGATCA | 1 cut(s) | 861 |
| BcoDI | GTCTC | 3 cut(s) | 182, 292, 496 |
| BfaI | CTAG | 4 cut(s) | 126, 273, 338, 961 |
| BfmI | CTRYAG | 1 cut(s) | 242 |
| BfoI | RGCGCY | 1 cut(s) | 809 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 653 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmiI | GGNNCC | 2 cut(s) | 707, 766 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 104 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 4 cut(s) | 103, 210, 238, 600 |
| BseSI | GKGCMC | 1 cut(s) | 873 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 753 |
| BsiHKAI | GWGCWC | 2 cut(s) | 564, 888 |
| BsmAI | GTCTC | 3 cut(s) | 182, 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 753 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 3 cut(s) | 564, 873, 888 |
| Bsp143I | GATC | 4 cut(s) | 444, 626, 861, 957 |
| BspACI | CCGC | 4 cut(s) | 79, 95, 361, 905 |
| BspANI | GGCC | 1 cut(s) | 753 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 707, 766 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BssMI | GATC | 4 cut(s) | 444, 626, 861, 957 |
| BssSI | CACGAG | 1 cut(s) | 887 |
| Bst2BI | CACGAG | 1 cut(s) | 887 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 246 |
| Bst6I | CTCTTC | 1 cut(s) | 706 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 510 |
| BstF5I | GGATG | 4 cut(s) | 103, 210, 238, 600 |
| BstH2I | RGCGCY | 1 cut(s) | 809 |
| BstHHI | GCGC | 1 cut(s) | 808 |
| BstKTI | GATC | 4 cut(s) | 447, 629, 864, 960 |
| BstMAI | GTCTC | 3 cut(s) | 182, 292, 496 |
| BstMBI | GATC | 4 cut(s) | 444, 626, 861, 957 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 803, 913, 934 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 242 |
| BstSLI | GKGCMC | 1 cut(s) | 873 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 761 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 753 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 103, 210, 238, 600 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 808 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| CseI | GACGC | 1 cut(s) | 803 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 3 cut(s) | 557, 593, 755 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 510 |
| DpnI | GATC | 4 cut(s) | 446, 628, 863, 959 |
| DpnII | GATC | 4 cut(s) | 444, 626, 861, 957 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 651 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 651 |
| EaeI | YGGCCR | 1 cut(s) | 751 |
| Eam1104I | CTCTTC | 1 cut(s) | 706 |
| EarI | CTCTTC | 1 cut(s) | 706 |
| EciI | GGCGGA | 2 cut(s) | 68, 110 |
| Ecl136II | GAGCTC | 2 cut(s) | 562, 886 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 888 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 653 |
| Eco53kI | GAGCTC | 2 cut(s) | 562, 886 |
| EcoICRI | GAGCTC | 2 cut(s) | 562, 886 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 888 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 560, 596, 758 |
| FatI | CATG | 3 cut(s) | 556, 592, 754 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 861 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 4 cut(s) | 110, 197, 245, 587 |
| FriOI | GRGCYC | 2 cut(s) | 564, 888 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 4 cut(s) | 126, 273, 338, 961 |
| GlaI | GCGC | 1 cut(s) | 807 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 1 cut(s) | 809 |
| HaeIII | GGCC | 1 cut(s) | 753 |
| HgaI | GACGC | 1 cut(s) | 803 |
| HhaI | GCGC | 1 cut(s) | 808 |
| Hin1II | CATG | 3 cut(s) | 560, 596, 758 |
| Hin6I | GCGC | 1 cut(s) | 806 |
| HinP1I | GCGC | 1 cut(s) | 806 |
| HinfI | GANTC | 8 cut(s) | 47, 102, 115, 220, 236, 320, 472, 543 |
| HphI | GGTGA | 1 cut(s) | 894 |
| Hpy166II | GTNNAC | 1 cut(s) | 719 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 400, 861 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 332, 386, 557, 624, 845, 889 |
| Hpy8I | GTNNAC | 1 cut(s) | 719 |
| HpyAV | CCTTC | 2 cut(s) | 270, 671 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 246 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 646, 721 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 803, 913, 934 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 510 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 646, 721 |
| Hsp92II | CATG | 3 cut(s) | 560, 596, 758 |
| HspAI | GCGC | 1 cut(s) | 806 |
| Ksp22I | TGATCA | 1 cut(s) | 861 |
| Kzo9I | GATC | 4 cut(s) | 444, 626, 861, 957 |
| LmnI | GCTCC | 2 cut(s) | 569, 770 |
| LpnPI | CCDG | 9 cut(s) | 23, 46, 95, 116, 143, 338, 345, 636, 735 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 4 cut(s) | 126, 273, 338, 961 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 646, 721 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 900 |
| MalI | GATC | 4 cut(s) | 446, 628, 863, 959 |
| MboI | GATC | 4 cut(s) | 444, 626, 861, 957 |
| MboII | GAAGA | 7 cut(s) | 179, 275, 278, 481, 622, 723, 904 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 3 cut(s) | 564, 873, 888 |
| MlsI | TGGCCA | 1 cut(s) | 753 |
| MluCI | AATT | 4 cut(s) | 17, 522, 619, 896 |
| MluNI | TGGCCA | 1 cut(s) | 753 |
| MlyI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| MnlI | CCTC | 6 cut(s) | 368, 707, 727, 731, 757, 819 |
| Mox20I | TGGCCA | 1 cut(s) | 753 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 753 |
| MseI | TTAA | 4 cut(s) | 294, 414, 422, 777 |
| MslI | CAYNNNNRTG | 6 cut(s) | 215, 231, 452, 605, 759, 789 |
| Msp20I | TGGCCA | 1 cut(s) | 753 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 803, 913, 934 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 626, 861, 957 |
| NlaIII | CATG | 3 cut(s) | 560, 596, 758 |
| NlaIV | GGNNCC | 2 cut(s) | 707, 766 |
| NmuCI | GTSAC | 2 cut(s) | 317, 900 |
| OliI | CACNNNNGTG | 1 cut(s) | 452 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 236, 543 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| PpsI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| Psp124BI | GAGCTC | 2 cut(s) | 564, 888 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 707, 766 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 6 cut(s) | 215, 231, 452, 605, 759, 789 |
| SacI | GAGCTC | 2 cut(s) | 564, 888 |
| SaqAI | TTAA | 4 cut(s) | 294, 414, 422, 777 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 444, 626, 861, 957 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| SchI | GAGTC | 4 cut(s) | 41, 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 564, 873, 888 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 242 |
| SinI | GGWCC | 1 cut(s) | 653 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 215, 231, 452, 605, 759, 789 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 17, 522, 619, 896 |
| SsiI | CCGC | 4 cut(s) | 79, 95, 361, 905 |
| SspMI | CTAG | 4 cut(s) | 126, 273, 338, 961 |
| SstI | GAGCTC | 2 cut(s) | 564, 888 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 246 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 649, 724 |
| TaqI | TCGA | 3 cut(s) | 520, 623, 846 |
| TasI | AATT | 4 cut(s) | 17, 522, 619, 896 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 236, 543 |
| Tru1I | TTAA | 4 cut(s) | 294, 414, 422, 777 |
| Tru9I | TTAA | 4 cut(s) | 294, 414, 422, 777 |
| TseFI | GTSAC | 2 cut(s) | 317, 900 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 900 |
| TspDTI | ATGAA | 3 cut(s) | 272, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 305, 619, 718 |
| VpaK11BI | GGWCC | 1 cut(s) | 653 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 126, 273, 338, 961 |