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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 816 |
| AccII | CGCG | 1 cut(s) | 666 |
| AciI | CCGC | 2 cut(s) | 361, 855 |
| AclWI | GGATC | 1 cut(s) | 618 |
| AcsI | RAATTY | 2 cut(s) | 425, 834 |
| AcyI | GRCGYC | 1 cut(s) | 682 |
| AdeI | CACNNNGTG | 1 cut(s) | 895 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 677, 816 |
| AgsI | TTSAA | 2 cut(s) | 376, 621 |
| AhlI | ACTAGT | 1 cut(s) | 44 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 206, 559, 755, 887 |
| AluI | AGCT | 6 cut(s) | 155, 161, 206, 559, 755, 887 |
| Alw21I | GWGCWC | 1 cut(s) | 561 |
| Alw26I | GTCTC | 1 cut(s) | 493 |
| AlwI | GGATC | 1 cut(s) | 618 |
| Ama87I | CYCGRG | 1 cut(s) | 271 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 2 cut(s) | 425, 834 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 402 |
| AspLEI | GCGC | 1 cut(s) | 668 |
| AspS9I | GGNCC | 1 cut(s) | 728 |
| AsuHPI | GGTGA | 1 cut(s) | 844 |
| AvaI | CYCGRG | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 728 |
| BaeGI | GKGCMC | 1 cut(s) | 823 |
| BanII | GRGCYC | 1 cut(s) | 561 |
| BbsI | GAAGAC | 2 cut(s) | 273, 473 |
| Bbv12I | GWGCWC | 1 cut(s) | 561 |
| BccI | CCATC | 3 cut(s) | 92, 342, 493 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 2 cut(s) | 703, 817 |
| BcoDI | GTCTC | 1 cut(s) | 493 |
| BcuI | ACTAGT | 1 cut(s) | 44 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 338, 923 |
| BfmI | CTRYAG | 1 cut(s) | 531 |
| BfuI | GTATCC | 2 cut(s) | 703, 817 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| Bme18I | GGWCC | 1 cut(s) | 728 |
| BmeT110I | CYCGRG | 1 cut(s) | 271 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 728 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 2 cut(s) | 94, 439 |
| BpiI | GAAGAC | 2 cut(s) | 273, 473 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaBI | GATNNNNATC | 1 cut(s) | 918 |
| BsaHI | GRCGYC | 1 cut(s) | 682 |
| BsaJI | CCNNGG | 1 cut(s) | 627 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 677, 816 |
| Bse1I | ACTGG | 1 cut(s) | 810 |
| Bse3DI | GCAATG | 2 cut(s) | 316, 576 |
| Bse8I | GATNNNNATC | 1 cut(s) | 918 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseDI | CCNNGG | 1 cut(s) | 627 |
| BseGI | GGATG | 4 cut(s) | 210, 238, 597, 725 |
| BseJI | GATNNNNATC | 1 cut(s) | 918 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 677, 816 |
| BseMI | GCAATG | 2 cut(s) | 316, 576 |
| BseNI | ACTGG | 1 cut(s) | 810 |
| BseRI | GAGGAG | 1 cut(s) | 747 |
| BseSI | GKGCMC | 1 cut(s) | 823 |
| Bsh1236I | CGCG | 1 cut(s) | 666 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 271 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 677, 816 |
| BsmAI | GTCTC | 1 cut(s) | 493 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 271 |
| Bsp1286I | GDGCHC | 2 cut(s) | 561, 823 |
| Bsp143I | GATC | 4 cut(s) | 441, 623, 907, 919 |
| BspACI | CCGC | 2 cut(s) | 361, 855 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 666 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspMAI | CTGCAG | 1 cut(s) | 535 |
| BspPI | GGATC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 2 cut(s) | 316, 576 |
| BsrI | ACTGG | 1 cut(s) | 810 |
| BssECI | CCNNGG | 1 cut(s) | 627 |
| BssMI | GATC | 4 cut(s) | 441, 623, 907, 919 |
| BssNI | GRCGYC | 1 cut(s) | 682 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 682 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 507, 672, 704 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 675 |
| BstF5I | GGATG | 4 cut(s) | 210, 238, 597, 725 |
| BstFNI | CGCG | 1 cut(s) | 666 |
| BstHHI | GCGC | 1 cut(s) | 668 |
| BstKTI | GATC | 4 cut(s) | 444, 626, 910, 922 |
| BstMAI | GTCTC | 1 cut(s) | 493 |
| BstMBI | GATC | 4 cut(s) | 441, 623, 907, 919 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 863, 884 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 531 |
| BstSLI | GKGCMC | 1 cut(s) | 823 |
| BstUI | CGCG | 1 cut(s) | 666 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 473 |
| BstX2I | RGATCY | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 623 |
| BsuI | GTATCC | 2 cut(s) | 703, 817 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 210, 238, 597, 725 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 553 |
| CfoI | GCGC | 1 cut(s) | 668 |
| Cfr13I | GGNCC | 1 cut(s) | 728 |
| CseI | GACGC | 1 cut(s) | 690 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 609, 644 |
| CviAII | CATG | 2 cut(s) | 454, 554 |
| DdeI | CTNAG | 4 cut(s) | 184, 507, 672, 704 |
| DpnI | GATC | 4 cut(s) | 443, 625, 909, 921 |
| DpnII | GATC | 4 cut(s) | 441, 623, 907, 919 |
| DraIII | CACNNNGTG | 1 cut(s) | 895 |
| Ecl136II | GAGCTC | 1 cut(s) | 559 |
| Eco24I | GRGCYC | 1 cut(s) | 561 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 728 |
| Eco53kI | GAGCTC | 1 cut(s) | 559 |
| Eco88I | CYCGRG | 1 cut(s) | 271 |
| EcoICRI | GAGCTC | 1 cut(s) | 559 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 675 |
| EcoRI | GAATTC | 2 cut(s) | 425, 834 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 561 |
| FaeI | CATG | 2 cut(s) | 457, 557 |
| FatI | CATG | 2 cut(s) | 453, 553 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 4 cut(s) | 197, 245, 584, 732 |
| FriOI | GRGCYC | 1 cut(s) | 561 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 338, 923 |
| GlaI | GCGC | 1 cut(s) | 667 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HgaI | GACGC | 1 cut(s) | 690 |
| HhaI | GCGC | 1 cut(s) | 668 |
| Hin1I | GRCGYC | 1 cut(s) | 682 |
| Hin1II | CATG | 2 cut(s) | 457, 557 |
| Hin6I | GCGC | 1 cut(s) | 666 |
| HinP1I | GCGC | 1 cut(s) | 666 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 102, 236, 320, 469, 519, 540, 650 |
| HphI | GGTGA | 1 cut(s) | 844 |
| Hpy166II | GTNNAC | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 1 cut(s) | 397 |
| Hpy8I | GTNNAC | 1 cut(s) | 79 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 2 cut(s) | 494, 533 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 863, 884 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 507, 672, 704 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 1 cut(s) | 682 |
| Hsp92II | CATG | 2 cut(s) | 457, 557 |
| HspAI | GCGC | 1 cut(s) | 666 |
| Kzo9I | GATC | 4 cut(s) | 441, 623, 907, 919 |
| LmnI | GCTCC | 3 cut(s) | 246, 566, 760 |
| LweI | GCATC | 2 cut(s) | 94, 439 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 338, 923 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 3 cut(s) | 5, 526, 850 |
| MalI | GATC | 4 cut(s) | 443, 625, 909, 921 |
| MboI | GATC | 4 cut(s) | 441, 623, 907, 919 |
| MboII | GAAGA | 7 cut(s) | 275, 278, 308, 478, 619, 854, 917 |
| MflI | RGATCY | 1 cut(s) | 623 |
| MhlI | GDGCHC | 2 cut(s) | 561, 823 |
| MluCI | AATT | 7 cut(s) | 17, 425, 459, 616, 655, 834, 846 |
| MlyI | GAGTC | 1 cut(s) | 463 |
| MnlI | CCTC | 4 cut(s) | 181, 368, 671, 768 |
| MroXI | GAANNNNTTC | 1 cut(s) | 402 |
| MseI | TTAA | 3 cut(s) | 411, 419, 458 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 602 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MvnI | CGCG | 1 cut(s) | 666 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 863, 884 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 441, 623, 907, 919 |
| NlaIII | CATG | 2 cut(s) | 457, 557 |
| NmuCI | GTSAC | 1 cut(s) | 850 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 688 |
| PdmI | GAANNNNTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 6 cut(s) | 102, 236, 320, 519, 540, 650 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 816 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 1 cut(s) | 463 |
| PpsI | GAGTC | 1 cut(s) | 463 |
| Psp124BI | GAGCTC | 1 cut(s) | 561 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspPI | GGNCC | 1 cut(s) | 728 |
| PstI | CTGCAG | 1 cut(s) | 535 |
| PsuI | RGATCY | 1 cut(s) | 623 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 602 |
| SacI | GAGCTC | 1 cut(s) | 561 |
| SaqAI | TTAA | 3 cut(s) | 411, 419, 458 |
| Sau3AI | GATC | 4 cut(s) | 441, 623, 907, 919 |
| Sau96I | GGNCC | 1 cut(s) | 728 |
| SchI | GAGTC | 1 cut(s) | 463 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 2 cut(s) | 561, 823 |
| SfaNI | GCATC | 2 cut(s) | 94, 439 |
| SfcI | CTRYAG | 1 cut(s) | 531 |
| SinI | GGWCC | 1 cut(s) | 728 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 602 |
| SmlI | CTYRAG | 2 cut(s) | 89, 156 |
| SmoI | CTYRAG | 2 cut(s) | 89, 156 |
| SpeI | ACTAGT | 1 cut(s) | 44 |
| Sse9I | AATT | 7 cut(s) | 17, 425, 459, 616, 655, 834, 846 |
| SsiI | CCGC | 2 cut(s) | 361, 855 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 338, 923 |
| SstI | GAGCTC | 1 cut(s) | 561 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 294, 517 |
| TasI | AATT | 7 cut(s) | 17, 425, 459, 616, 655, 834, 846 |
| TfiI | GAWTC | 6 cut(s) | 102, 236, 320, 519, 540, 650 |
| Tru1I | TTAA | 3 cut(s) | 411, 419, 458 |
| Tru9I | TTAA | 3 cut(s) | 411, 419, 458 |
| TseFI | GTSAC | 1 cut(s) | 850 |
| Tsp45I | GTSAC | 1 cut(s) | 850 |
| TspDTI | ATGAA | 5 cut(s) | 21, 272, 276, 542, 587 |
| TspGWI | ACGGA | 1 cut(s) | 616 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 816 |
| VpaK11BI | GGWCC | 1 cut(s) | 728 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 675 |
| XapI | RAATTY | 2 cut(s) | 425, 834 |
| XbaI | TCTAGA | 1 cut(s) | 922 |
| XmnI | GAANNNNTTC | 1 cut(s) | 402 |
| XspI | CTAG | 4 cut(s) | 45, 126, 338, 923 |