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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 907 |
| Acc36I | ACCTGC | 1 cut(s) | 907 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 775 |
| AccIII | TCCGGA | 1 cut(s) | 44 |
| AcoI | YGGCCR | 1 cut(s) | 582 |
| AcsI | RAATTY | 1 cut(s) | 458 |
| AcuI | CTGAAG | 3 cut(s) | 159, 234, 312 |
| AcvI | CACGTG | 1 cut(s) | 772 |
| AdeI | CACNNNGTG | 1 cut(s) | 775 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 679, 775 |
| AgsI | TTSAA | 2 cut(s) | 337, 406 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 226, 304, 888 |
| AjiI | CACGTC | 1 cut(s) | 757 |
| AjnI | CCWGG | 3 cut(s) | 69, 396, 791 |
| AluBI | AGCT | 6 cut(s) | 19, 82, 212, 290, 475, 485 |
| AluI | AGCT | 6 cut(s) | 19, 82, 212, 290, 475, 485 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 2 cut(s) | 669, 896 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 485 |
| Aor13HI | TCCGGA | 1 cut(s) | 44 |
| AoxI | GGCC | 7 cut(s) | 582, 644, 661, 694, 765, 825, 830 |
| ApeKI | GCWGC | 1 cut(s) | 538 |
| ApoI | RAATTY | 1 cut(s) | 458 |
| AseI | ATTAAT | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 503 |
| AsuC2I | CCSGG | 2 cut(s) | 652, 829 |
| AsuHPI | GGTGA | 1 cut(s) | 829 |
| AvaII | GGWCC | 5 cut(s) | 66, 220, 228, 306, 795 |
| BalI | TGGCCA | 1 cut(s) | 584 |
| BanII | GRGCYC | 1 cut(s) | 477 |
| BbrPI | CACGTG | 1 cut(s) | 772 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BbvI | GCAGC | 1 cut(s) | 550 |
| BccI | CCATC | 1 cut(s) | 348 |
| BciT130I | CCWGG | 3 cut(s) | 71, 398, 793 |
| BclI | TGATCA | 1 cut(s) | 634 |
| BcnI | CCSGG | 2 cut(s) | 652, 829 |
| BcoDI | GTCTC | 2 cut(s) | 669, 896 |
| BfaI | CTAG | 2 cut(s) | 323, 567 |
| BfmI | CTRYAG | 1 cut(s) | 436 |
| BfuAI | ACCTGC | 1 cut(s) | 907 |
| BisI | GCNGC | 1 cut(s) | 539 |
| BlsI | GCNGC | 1 cut(s) | 540 |
| Bme1390I | CCNGG | 5 cut(s) | 71, 398, 652, 793, 829 |
| Bme18I | GGWCC | 5 cut(s) | 66, 220, 228, 306, 795 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 226, 304, 888 |
| BmgBI | CACGTC | 1 cut(s) | 757 |
| BmiI | GGNNCC | 4 cut(s) | 68, 222, 230, 308 |
| BmrFI | CCNGG | 5 cut(s) | 71, 398, 652, 793, 829 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 410, 442, 459, 491 |
| BpuEI | CTTGAG | 1 cut(s) | 257 |
| BpuMI | CCSGG | 2 cut(s) | 652, 829 |
| BsaAI | YACGTR | 1 cut(s) | 772 |
| BsaBI | GATNNNNATC | 1 cut(s) | 167 |
| BsaI | GGTCTC | 1 cut(s) | 896 |
| BsaJI | CCNNGG | 7 cut(s) | 69, 224, 302, 651, 726, 739, 791 |
| BsaWI | WCCGGW | 1 cut(s) | 44 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 502, 532 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 679, 775 |
| Bse1I | ACTGG | 1 cut(s) | 383 |
| Bse8I | GATNNNNATC | 1 cut(s) | 167 |
| BseAI | TCCGGA | 1 cut(s) | 44 |
| BseBI | CCWGG | 3 cut(s) | 71, 398, 793 |
| BseDI | CCNNGG | 7 cut(s) | 69, 224, 302, 651, 726, 739, 791 |
| BseGI | GGATG | 1 cut(s) | 79 |
| BseJI | GATNNNNATC | 1 cut(s) | 167 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 679, 775 |
| BseMII | CTCAG | 2 cut(s) | 588, 856 |
| BseNI | ACTGG | 1 cut(s) | 383 |
| BseRI | GAGGAG | 1 cut(s) | 764 |
| BseXI | GCAGC | 1 cut(s) | 550 |
| BshFI | GGCC | 7 cut(s) | 584, 646, 663, 696, 767, 827, 832 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiSI | CCGG | 3 cut(s) | 45, 651, 829 |
| BslFI | GGGAC | 2 cut(s) | 214, 292 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 679, 775 |
| BsmAI | GTCTC | 2 cut(s) | 669, 896 |
| BsmFI | GGGAC | 2 cut(s) | 214, 292 |
| BsnI | GGCC | 7 cut(s) | 584, 646, 663, 696, 767, 827, 832 |
| Bso31I | GGTCTC | 1 cut(s) | 896 |
| Bsp1286I | GDGCHC | 1 cut(s) | 477 |
| Bsp13I | TCCGGA | 1 cut(s) | 44 |
| Bsp143I | GATC | 3 cut(s) | 107, 487, 634 |
| BspANI | GGCC | 7 cut(s) | 584, 646, 663, 696, 767, 827, 832 |
| BspCNI | CTCAG | 2 cut(s) | 587, 855 |
| BspEI | TCCGGA | 1 cut(s) | 44 |
| BspLI | GGNNCC | 4 cut(s) | 68, 222, 230, 308 |
| BspMI | ACCTGC | 1 cut(s) | 907 |
| BspQI | GCTCTTC | 2 cut(s) | 321, 465 |
| BspTNI | GGTCTC | 1 cut(s) | 896 |
| BsrI | ACTGG | 1 cut(s) | 383 |
| BssECI | CCNNGG | 7 cut(s) | 69, 224, 302, 651, 726, 739, 791 |
| BssMI | GATC | 3 cut(s) | 107, 487, 634 |
| BssT1I | CCWWGG | 2 cut(s) | 726, 739 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 398, 793 |
| Bst4CI | ACNGT | 5 cut(s) | 228, 306, 412, 589, 718 |
| Bst6I | CTCTTC | 4 cut(s) | 210, 321, 465, 911 |
| BstBAI | YACGTR | 1 cut(s) | 772 |
| BstC8I | GCNNGC | 1 cut(s) | 600 |
| BstDEI | CTNAG | 2 cut(s) | 574, 842 |
| BstDSI | CCRYGG | 2 cut(s) | 224, 302 |
| BstF5I | GGATG | 1 cut(s) | 79 |
| BstKTI | GATC | 3 cut(s) | 110, 490, 637 |
| BstMAI | GTCTC | 2 cut(s) | 669, 896 |
| BstMBI | GATC | 3 cut(s) | 107, 487, 634 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 379 |
| BstNI | CCWGG | 3 cut(s) | 71, 398, 793 |
| BstNSI | RCATGY | 1 cut(s) | 805 |
| BstSCI | CCNGG | 5 cut(s) | 69, 396, 650, 791, 827 |
| BstSFI | CTRYAG | 1 cut(s) | 436 |
| BstV1I | GCAGC | 1 cut(s) | 550 |
| BsuRI | GGCC | 7 cut(s) | 584, 646, 663, 696, 767, 827, 832 |
| BtgI | CCRYGG | 2 cut(s) | 224, 302 |
| BtgZI | GCGATG | 1 cut(s) | 115 |
| BtrI | CACGTC | 1 cut(s) | 757 |
| BtsCI | GGATG | 1 cut(s) | 79 |
| BtsIMutI | CAGTG | 1 cut(s) | 878 |
| BveI | ACCTGC | 1 cut(s) | 907 |
| Cac8I | GCNNGC | 1 cut(s) | 600 |
| CaiI | CAGNNNCTG | 1 cut(s) | 485 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 180, 215 |
| CviAII | CATG | 3 cut(s) | 535, 679, 802 |
| DdeI | CTNAG | 2 cut(s) | 574, 842 |
| DpnI | GATC | 3 cut(s) | 109, 489, 636 |
| DpnII | GATC | 3 cut(s) | 107, 487, 634 |
| DraIII | CACNNNGTG | 1 cut(s) | 775 |
| DriI | GACNNNNNGTC | 3 cut(s) | 226, 304, 888 |
| EaeI | YGGCCR | 1 cut(s) | 582 |
| Eam1104I | CTCTTC | 4 cut(s) | 210, 321, 465, 911 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 226, 304, 888 |
| EarI | CTCTTC | 4 cut(s) | 210, 321, 465, 911 |
| Ecl136II | GAGCTC | 1 cut(s) | 475 |
| Eco130I | CCWWGG | 2 cut(s) | 726, 739 |
| Eco147I | AGGCCT | 1 cut(s) | 663 |
| Eco24I | GRGCYC | 1 cut(s) | 477 |
| Eco31I | GGTCTC | 1 cut(s) | 896 |
| Eco47I | GGWCC | 5 cut(s) | 66, 220, 228, 306, 795 |
| Eco53kI | GAGCTC | 1 cut(s) | 475 |
| Eco57I | CTGAAG | 3 cut(s) | 159, 234, 312 |
| Eco72I | CACGTG | 1 cut(s) | 772 |
| EcoICRI | GAGCTC | 1 cut(s) | 475 |
| EcoO109I | RGGNCCY | 1 cut(s) | 220 |
| EcoRII | CCWGG | 3 cut(s) | 69, 396, 791 |
| EcoT14I | CCWWGG | 2 cut(s) | 726, 739 |
| EcoT38I | GRGCYC | 1 cut(s) | 477 |
| ErhI | CCWWGG | 2 cut(s) | 726, 739 |
| FaeI | CATG | 3 cut(s) | 538, 682, 805 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 2 cut(s) | 214, 292 |
| FatI | CATG | 3 cut(s) | 534, 678, 801 |
| FauNDI | CATATG | 3 cut(s) | 180, 258, 711 |
| FbaI | TGATCA | 1 cut(s) | 634 |
| Fnu4HI | GCNGC | 1 cut(s) | 539 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 477 |
| Fsp4HI | GCNGC | 1 cut(s) | 539 |
| FspBI | CTAG | 2 cut(s) | 323, 567 |
| GluI | GCNGC | 1 cut(s) | 539 |
| HaeIII | GGCC | 7 cut(s) | 584, 646, 663, 696, 767, 827, 832 |
| HapII | CCGG | 3 cut(s) | 45, 651, 829 |
| Hin1II | CATG | 3 cut(s) | 538, 682, 805 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 5 cut(s) | 239, 333, 442, 570, 846 |
| HpaII | CCGG | 3 cut(s) | 45, 651, 829 |
| HphI | GGTGA | 1 cut(s) | 829 |
| Hpy166II | GTNNAC | 1 cut(s) | 760 |
| Hpy188I | TCNGA | 5 cut(s) | 345, 430, 577, 674, 845 |
| Hpy188III | TCNNGA | 5 cut(s) | 45, 172, 250, 323, 406 |
| Hpy8I | GTNNAC | 1 cut(s) | 760 |
| HpyAV | CCTTC | 7 cut(s) | 42, 142, 523, 531, 650, 677, 844 |
| HpyCH4III | ACNGT | 5 cut(s) | 228, 306, 412, 589, 718 |
| HpyCH4IV | ACGT | 4 cut(s) | 391, 669, 756, 771 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 538, 907 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 379 |
| HpyF3I | CTNAG | 2 cut(s) | 574, 842 |
| HpySE526I | ACGT | 4 cut(s) | 391, 669, 756, 771 |
| Hsp92II | CATG | 3 cut(s) | 538, 682, 805 |
| Kpn2I | TCCGGA | 1 cut(s) | 44 |
| Ksp22I | TGATCA | 1 cut(s) | 634 |
| Kzo9I | GATC | 3 cut(s) | 107, 487, 634 |
| LguI | GCTCTTC | 2 cut(s) | 321, 465 |
| LmnI | GCTCC | 1 cut(s) | 87 |
| Lsp1109I | GCAGC | 1 cut(s) | 550 |
| MaeI | CTAG | 2 cut(s) | 323, 567 |
| MaeII | ACGT | 4 cut(s) | 391, 669, 756, 771 |
| MaeIII | GTNAC | 2 cut(s) | 447, 718 |
| MalI | GATC | 3 cut(s) | 109, 489, 636 |
| MboI | GATC | 3 cut(s) | 107, 487, 634 |
| MboII | GAAGA | 5 cut(s) | 152, 227, 305, 338, 482 |
| MhlI | GDGCHC | 1 cut(s) | 477 |
| MlsI | TGGCCA | 1 cut(s) | 584 |
| MluCI | AATT | 3 cut(s) | 458, 578, 809 |
| MluNI | TGGCCA | 1 cut(s) | 584 |
| MmeI | TCCRAC | 1 cut(s) | 822 |
| Mox20I | TGGCCA | 1 cut(s) | 584 |
| MroI | TCCGGA | 1 cut(s) | 44 |
| MroXI | GAANNNNTTC | 1 cut(s) | 503 |
| MscI | TGGCCA | 1 cut(s) | 584 |
| MseI | TTAA | 1 cut(s) | 117 |
| Msp20I | TGGCCA | 1 cut(s) | 584 |
| MspI | CCGG | 3 cut(s) | 45, 651, 829 |
| MspR9I | CCNGG | 5 cut(s) | 71, 398, 652, 793, 829 |
| MvaI | CCWGG | 3 cut(s) | 71, 398, 793 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 379 |
| NciI | CCSGG | 2 cut(s) | 652, 829 |
| NdeI | CATATG | 3 cut(s) | 180, 258, 711 |
| NdeII | GATC | 3 cut(s) | 107, 487, 634 |
| NlaIII | CATG | 3 cut(s) | 538, 682, 805 |
| NlaIV | GGNNCC | 4 cut(s) | 68, 222, 230, 308 |
| NmuCI | GTSAC | 2 cut(s) | 447, 718 |
| NspI | RCATGY | 1 cut(s) | 805 |
| PaqCI | CACCTGC | 1 cut(s) | 907 |
| PceI | AGGCCT | 1 cut(s) | 663 |
| PciSI | GCTCTTC | 2 cut(s) | 321, 465 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 753 |
| PdmI | GAANNNNTTC | 1 cut(s) | 503 |
| PfeI | GAWTC | 5 cut(s) | 239, 333, 442, 570, 846 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 775 |
| PfoI | TCCNGGA | 1 cut(s) | 396 |
| PkrI | GCNGC | 1 cut(s) | 540 |
| PmaCI | CACGTG | 1 cut(s) | 772 |
| PmlI | CACGTG | 1 cut(s) | 772 |
| Ppu21I | YACGTR | 1 cut(s) | 772 |
| PpuMI | RGGWCCY | 1 cut(s) | 220 |
| PshBI | ATTAAT | 1 cut(s) | 117 |
| Psp124BI | GAGCTC | 1 cut(s) | 477 |
| Psp5II | RGGWCCY | 1 cut(s) | 220 |
| Psp6I | CCWGG | 3 cut(s) | 69, 396, 791 |
| PspCI | CACGTG | 1 cut(s) | 772 |
| PspGI | CCWGG | 3 cut(s) | 69, 396, 791 |
| PspN4I | GGNNCC | 4 cut(s) | 68, 222, 230, 308 |
| PspPPI | RGGWCCY | 1 cut(s) | 220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 485 |
| SacI | GAGCTC | 1 cut(s) | 477 |
| SapI | GCTCTTC | 2 cut(s) | 321, 465 |
| SaqAI | TTAA | 1 cut(s) | 117 |
| SatI | GCNGC | 1 cut(s) | 539 |
| Sau3AI | GATC | 3 cut(s) | 107, 487, 634 |
| ScrFI | CCNGG | 5 cut(s) | 71, 398, 652, 793, 829 |
| SduI | GDGCHC | 1 cut(s) | 477 |
| SfcI | CTRYAG | 1 cut(s) | 436 |
| SinI | GGWCC | 5 cut(s) | 66, 220, 228, 306, 795 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| Sse9I | AATT | 3 cut(s) | 458, 578, 809 |
| SseBI | AGGCCT | 1 cut(s) | 663 |
| SspI | AATATT | 2 cut(s) | 206, 284 |
| SspMI | CTAG | 2 cut(s) | 323, 567 |
| SstI | GAGCTC | 1 cut(s) | 477 |
| StuI | AGGCCT | 1 cut(s) | 663 |
| StyD4I | CCNGG | 5 cut(s) | 69, 396, 650, 791, 827 |
| StyI | CCWWGG | 2 cut(s) | 726, 739 |
| TaaI | ACNGT | 5 cut(s) | 228, 306, 412, 589, 718 |
| TaiI | ACGT | 4 cut(s) | 394, 672, 759, 774 |
| TaqI | TCGA | 2 cut(s) | 60, 747 |
| TaqII | GACCGA | 2 cut(s) | 232, 435 |
| TasI | AATT | 3 cut(s) | 458, 578, 809 |
| TfiI | GAWTC | 5 cut(s) | 239, 333, 442, 570, 846 |
| Tru1I | TTAA | 1 cut(s) | 117 |
| Tru9I | TTAA | 1 cut(s) | 117 |
| TscAI | CASTG | 1 cut(s) | 885 |
| TseFI | GTSAC | 2 cut(s) | 447, 718 |
| TseI | GCWGC | 1 cut(s) | 538 |
| Tsp45I | GTSAC | 2 cut(s) | 447, 718 |
| TspDTI | ATGAA | 2 cut(s) | 157, 161 |
| TspRI | CASTG | 1 cut(s) | 885 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 775 |
| VpaK11BI | GGWCC | 5 cut(s) | 66, 220, 228, 306, 795 |
| VspI | ATTAAT | 1 cut(s) | 117 |
| XapI | RAATTY | 1 cut(s) | 458 |
| XbaI | TCTAGA | 1 cut(s) | 322 |
| XceI | RCATGY | 1 cut(s) | 805 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 231, 309 |
| XmnI | GAANNNNTTC | 1 cut(s) | 503 |
| XspI | CTAG | 2 cut(s) | 323, 567 |