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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| Acc65I | GGTACC | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 2 cut(s) | 273, 440 |
| AccBSI | CCGCTC | 1 cut(s) | 271 |
| AciI | CCGC | 4 cut(s) | 271, 319, 464, 468 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcuI | CTGAAG | 2 cut(s) | 126, 615 |
| AcvI | CACGTG | 2 cut(s) | 362, 380 |
| AdeI | CACNNNGTG | 1 cut(s) | 365 |
| AfaI | GTAC | 3 cut(s) | 103, 275, 530 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 257, 258, 284, 328, 381, 454 |
| AflIII | ACRYGT | 2 cut(s) | 359, 377 |
| AgsI | TTSAA | 2 cut(s) | 204, 589 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AluBI | AGCT | 5 cut(s) | 40, 142, 164, 485, 593 |
| AluI | AGCT | 5 cut(s) | 40, 142, 164, 485, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 609 |
| Alw44I | GTGCAC | 1 cut(s) | 605 |
| AlwI | GGATC | 1 cut(s) | 131 |
| AoxI | GGCC | 2 cut(s) | 206, 307 |
| ApaI | GGGCCC | 1 cut(s) | 311 |
| ApaLI | GTGCAC | 1 cut(s) | 605 |
| ApeKI | GCWGC | 1 cut(s) | 485 |
| Asp718I | GGTACC | 1 cut(s) | 273 |
| AspA2I | CCTAGG | 1 cut(s) | 452 |
| AspS9I | GGNCC | 4 cut(s) | 207, 307, 308, 508 |
| AsuC2I | CCSGG | 1 cut(s) | 329 |
| AsuHPI | GGTGA | 1 cut(s) | 565 |
| AvaII | GGWCC | 1 cut(s) | 508 |
| AvrII | CCTAGG | 1 cut(s) | 452 |
| AxyI | CCTNAGG | 1 cut(s) | 512 |
| BaeGI | GKGCMC | 3 cut(s) | 264, 311, 609 |
| BanI | GGYRCC | 2 cut(s) | 273, 440 |
| BanII | GRGCYC | 1 cut(s) | 311 |
| BauI | CACGAG | 1 cut(s) | 185 |
| BbrPI | CACGTG | 2 cut(s) | 362, 380 |
| Bbv12I | GWGCWC | 1 cut(s) | 609 |
| BbvI | GCAGC | 1 cut(s) | 472 |
| BccI | CCATC | 1 cut(s) | 548 |
| BciVI | GTATCC | 2 cut(s) | 349, 410 |
| BcnI | CCSGG | 1 cut(s) | 329 |
| BfaI | CTAG | 3 cut(s) | 405, 453, 482 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfuI | GTATCC | 2 cut(s) | 349, 410 |
| BisI | GCNGC | 1 cut(s) | 486 |
| BlnI | CCTAGG | 1 cut(s) | 452 |
| BlsI | GCNGC | 1 cut(s) | 487 |
| Bme1390I | CCNGG | 1 cut(s) | 329 |
| Bme18I | GGWCC | 1 cut(s) | 508 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 4 cut(s) | 207, 307, 308, 508 |
| BmiI | GGNNCC | 5 cut(s) | 217, 275, 309, 442, 509 |
| BmrFI | CCNGG | 1 cut(s) | 329 |
| BpuMI | CCSGG | 1 cut(s) | 329 |
| BsaAI | YACGTR | 2 cut(s) | 362, 380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 567 |
| BsaJI | CCNNGG | 1 cut(s) | 452 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 376, 406, 433, 463 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 257, 258, 284, 328, 381, 454 |
| Bse21I | CCTNAGG | 1 cut(s) | 512 |
| Bse8I | GATNNNNATC | 1 cut(s) | 567 |
| BseDI | CCNNGG | 1 cut(s) | 452 |
| BseGI | GGATG | 1 cut(s) | 619 |
| BseJI | GATNNNNATC | 1 cut(s) | 567 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 257, 258, 284, 328, 381, 454 |
| BseMII | CTCAG | 2 cut(s) | 156, 503 |
| BseRI | GAGGAG | 1 cut(s) | 402 |
| BseSI | GKGCMC | 3 cut(s) | 264, 311, 609 |
| BseXI | GCAGC | 1 cut(s) | 472 |
| BshFI | GGCC | 2 cut(s) | 208, 309 |
| BshNI | GGYRCC | 2 cut(s) | 273, 440 |
| BsiHKAI | GWGCWC | 1 cut(s) | 609 |
| BsiSI | CCGG | 1 cut(s) | 328 |
| BslFI | GGGAC | 3 cut(s) | 303, 312, 521 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 257, 258, 284, 328, 381, 454 |
| BsmFI | GGGAC | 3 cut(s) | 303, 312, 521 |
| BsnI | GGCC | 2 cut(s) | 208, 309 |
| Bsp120I | GGGCCC | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 3 cut(s) | 264, 311, 609 |
| Bsp143I | GATC | 1 cut(s) | 123 |
| BspACI | CCGC | 4 cut(s) | 271, 319, 464, 468 |
| BspANI | GGCC | 2 cut(s) | 208, 309 |
| BspCNI | CTCAG | 2 cut(s) | 157, 504 |
| BspHI | TCATGA | 2 cut(s) | 126, 229 |
| BspLI | GGNNCC | 5 cut(s) | 217, 275, 309, 442, 509 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BspT107I | GGYRCC | 2 cut(s) | 273, 440 |
| BsrBI | CCGCTC | 1 cut(s) | 271 |
| BssECI | CCNNGG | 1 cut(s) | 452 |
| BssMI | GATC | 1 cut(s) | 123 |
| BssSI | CACGAG | 1 cut(s) | 185 |
| BssT1I | CCWWGG | 1 cut(s) | 452 |
| Bst2BI | CACGAG | 1 cut(s) | 185 |
| Bst4CI | ACNGT | 2 cut(s) | 101, 341 |
| BstBAI | YACGTR | 2 cut(s) | 362, 380 |
| BstC8I | GCNNGC | 3 cut(s) | 464, 468, 472 |
| BstDEI | CTNAG | 3 cut(s) | 165, 279, 512 |
| BstF5I | GGATG | 1 cut(s) | 619 |
| BstKTI | GATC | 1 cut(s) | 126 |
| BstMBI | GATC | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstSCI | CCNGG | 1 cut(s) | 327 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 3 cut(s) | 264, 311, 609 |
| BstV1I | GCAGC | 1 cut(s) | 472 |
| Bsu36I | CCTNAGG | 1 cut(s) | 512 |
| BsuI | GTATCC | 2 cut(s) | 349, 410 |
| BsuRI | GGCC | 2 cut(s) | 208, 309 |
| BtsCI | GGATG | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 3 cut(s) | 464, 468, 472 |
| CciI | TCATGA | 2 cut(s) | 126, 229 |
| Cfr13I | GGNCC | 4 cut(s) | 207, 307, 308, 508 |
| Csp6I | GTAC | 3 cut(s) | 102, 274, 529 |
| CviAII | CATG | 4 cut(s) | 127, 173, 230, 293 |
| CviJI | RGCY | 9 cut(s) | 40, 77, 142, 164, 208, 309, 420, 485, 593 |
| CviKI_1 | RGCY | 9 cut(s) | 40, 77, 142, 164, 208, 309, 420, 485, 593 |
| CviQI | GTAC | 3 cut(s) | 102, 274, 529 |
| DdeI | CTNAG | 3 cut(s) | 165, 279, 512 |
| DpnI | GATC | 1 cut(s) | 125 |
| DpnII | GATC | 1 cut(s) | 123 |
| DraIII | CACNNNGTG | 1 cut(s) | 365 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 452 |
| Eco24I | GRGCYC | 1 cut(s) | 311 |
| Eco47I | GGWCC | 1 cut(s) | 508 |
| Eco57I | CTGAAG | 2 cut(s) | 126, 615 |
| Eco72I | CACGTG | 2 cut(s) | 362, 380 |
| Eco81I | CCTNAGG | 1 cut(s) | 512 |
| EcoO109I | RGGNCCY | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 452 |
| EcoT38I | GRGCYC | 1 cut(s) | 311 |
| ErhI | CCWWGG | 1 cut(s) | 452 |
| FaeI | CATG | 4 cut(s) | 130, 176, 233, 296 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 516, 548, 602 |
| FaqI | GGGAC | 3 cut(s) | 303, 312, 521 |
| FatI | CATG | 4 cut(s) | 126, 172, 229, 292 |
| FauI | CCCGC | 2 cut(s) | 471, 475 |
| Fnu4HI | GCNGC | 1 cut(s) | 486 |
| FriOI | GRGCYC | 1 cut(s) | 311 |
| Fsp4HI | GCNGC | 1 cut(s) | 486 |
| FspBI | CTAG | 3 cut(s) | 405, 453, 482 |
| GluI | GCNGC | 1 cut(s) | 486 |
| HaeIII | GGCC | 2 cut(s) | 208, 309 |
| HapII | CCGG | 1 cut(s) | 328 |
| Hin1II | CATG | 4 cut(s) | 130, 176, 233, 296 |
| HpaII | CCGG | 1 cut(s) | 328 |
| HphI | GGTGA | 1 cut(s) | 565 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 529, 607 |
| Hpy188III | TCNNGA | 3 cut(s) | 127, 187, 230 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 529, 607 |
| Hpy99I | CGWCG | 1 cut(s) | 123 |
| HpyAV | CCTTC | 2 cut(s) | 73, 326 |
| HpyCH4III | ACNGT | 2 cut(s) | 101, 341 |
| HpyCH4IV | ACGT | 3 cut(s) | 301, 361, 379 |
| HpyCH4V | TGCA | 3 cut(s) | 248, 488, 607 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 3 cut(s) | 165, 279, 512 |
| HpySE526I | ACGT | 3 cut(s) | 301, 361, 379 |
| Hsp92II | CATG | 4 cut(s) | 130, 176, 233, 296 |
| KpnI | GGTACC | 1 cut(s) | 277 |
| Kzo9I | GATC | 1 cut(s) | 123 |
| LmnI | GCTCC | 2 cut(s) | 268, 517 |
| LpnPI | CCDG | 4 cut(s) | 36, 341, 481, 524 |
| Lsp1109I | GCAGC | 1 cut(s) | 472 |
| MaeI | CTAG | 3 cut(s) | 405, 453, 482 |
| MaeII | ACGT | 3 cut(s) | 301, 361, 379 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 125 |
| MbiI | CCGCTC | 1 cut(s) | 271 |
| MboI | GATC | 1 cut(s) | 123 |
| MboII | GAAGA | 5 cut(s) | 554, 557, 560, 563, 608 |
| MhlI | GDGCHC | 3 cut(s) | 264, 311, 609 |
| MluCI | AATT | 4 cut(s) | 42, 193, 199, 238 |
| MnlI | CCTC | 9 cut(s) | 123, 251, 289, 380, 383, 459, 469, 507, 574 |
| MseI | TTAA | 1 cut(s) | 5 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 612 |
| MspI | CCGG | 1 cut(s) | 328 |
| MspR9I | CCNGG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NciI | CCSGG | 1 cut(s) | 329 |
| NdeII | GATC | 1 cut(s) | 123 |
| NlaIII | CATG | 4 cut(s) | 130, 176, 233, 296 |
| NlaIV | GGNNCC | 5 cut(s) | 217, 275, 309, 442, 509 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PagI | TCATGA | 2 cut(s) | 126, 229 |
| PkrI | GCNGC | 1 cut(s) | 487 |
| PmaCI | CACGTG | 2 cut(s) | 362, 380 |
| PmlI | CACGTG | 2 cut(s) | 362, 380 |
| Ppu21I | YACGTR | 2 cut(s) | 362, 380 |
| PpuMI | RGGWCCY | 1 cut(s) | 508 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 508 |
| PspCI | CACGTG | 2 cut(s) | 362, 380 |
| PspN4I | GGNNCC | 5 cut(s) | 217, 275, 309, 442, 509 |
| PspOMI | GGGCCC | 1 cut(s) | 307 |
| PspPI | GGNCC | 4 cut(s) | 207, 307, 308, 508 |
| PspPPI | RGGWCCY | 1 cut(s) | 508 |
| RsaI | GTAC | 3 cut(s) | 103, 275, 530 |
| RsaNI | GTAC | 3 cut(s) | 102, 274, 529 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 612 |
| SaqAI | TTAA | 1 cut(s) | 5 |
| SatI | GCNGC | 1 cut(s) | 486 |
| Sau3AI | GATC | 1 cut(s) | 123 |
| Sau96I | GGNCC | 4 cut(s) | 207, 307, 308, 508 |
| ScrFI | CCNGG | 1 cut(s) | 329 |
| SduI | GDGCHC | 3 cut(s) | 264, 311, 609 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SinI | GGWCC | 1 cut(s) | 508 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 612 |
| Sse9I | AATT | 4 cut(s) | 42, 193, 199, 238 |
| SsiI | CCGC | 4 cut(s) | 271, 319, 464, 468 |
| SspMI | CTAG | 3 cut(s) | 405, 453, 482 |
| StyD4I | CCNGG | 1 cut(s) | 327 |
| StyI | CCWWGG | 1 cut(s) | 452 |
| TaaI | ACNGT | 2 cut(s) | 101, 341 |
| TaiI | ACGT | 3 cut(s) | 304, 364, 382 |
| TaqI | TCGA | 1 cut(s) | 118 |
| TasI | AATT | 4 cut(s) | 42, 193, 199, 238 |
| Tru1I | TTAA | 1 cut(s) | 5 |
| Tru9I | TTAA | 1 cut(s) | 5 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 485 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 4 cut(s) | 125, 218, 246, 615 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| VneI | GTGCAC | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 508 |
| XmaJI | CCTAGG | 1 cut(s) | 452 |
| XspI | CTAG | 3 cut(s) | 405, 453, 482 |