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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 2 cut(s) | 23, 453 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AcyI | GRCGYC | 1 cut(s) | 354 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| AgsI | TTSAA | 3 cut(s) | 74, 160, 294 |
| AluBI | AGCT | 3 cut(s) | 188, 346, 368 |
| AluI | AGCT | 3 cut(s) | 188, 346, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| AspLEI | GCGC | 3 cut(s) | 25, 356, 455 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 1 cut(s) | 518 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| AxyI | CCTNAGG | 1 cut(s) | 459 |
| BalI | TGGCCA | 1 cut(s) | 222 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 125, 159 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 408, 434 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BfoI | RGCGCY | 1 cut(s) | 357 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 2 cut(s) | 355, 421 |
| BmsI | GCATC | 1 cut(s) | 121 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaHI | GRCGYC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| Bse21I | CCTNAGG | 1 cut(s) | 459 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 453 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BslFI | GGGAC | 2 cut(s) | 187, 509 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 2 cut(s) | 187, 509 |
| BsmI | GAATGC | 1 cut(s) | 66 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspFNI | CGCG | 2 cut(s) | 23, 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 355, 421 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssNI | GRCGYC | 1 cut(s) | 354 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstACI | GRCGYC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 1 cut(s) | 459 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstFNI | CGCG | 2 cut(s) | 23, 453 |
| BstH2I | RGCGCY | 1 cut(s) | 357 |
| BstHHI | GCGC | 3 cut(s) | 25, 356, 455 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstUI | CGCG | 2 cut(s) | 23, 453 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| Bsu36I | CCTNAGG | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 3 cut(s) | 25, 356, 455 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| CseI | GACGC | 1 cut(s) | 29 |
| CviAII | CATG | 3 cut(s) | 13, 341, 358 |
| CviJI | RGCY | 6 cut(s) | 141, 188, 222, 227, 346, 368 |
| CviKI_1 | RGCY | 6 cut(s) | 141, 188, 222, 227, 346, 368 |
| DdeI | CTNAG | 1 cut(s) | 459 |
| DinI | GGCGCC | 1 cut(s) | 355 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco81I | CCTNAGG | 1 cut(s) | 459 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 1 cut(s) | 355 |
| EheI | GGCGCC | 1 cut(s) | 355 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 16, 344, 361 |
| FaqI | GGGAC | 2 cut(s) | 187, 509 |
| FatI | CATG | 3 cut(s) | 12, 340, 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FokI | GGATG | 1 cut(s) | 99 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 2 cut(s) | 408, 434 |
| GlaI | GCGC | 3 cut(s) | 24, 355, 454 |
| GluI | GCNGC | 1 cut(s) | 83 |
| HaeII | RGCGCY | 1 cut(s) | 357 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HgaI | GACGC | 1 cut(s) | 29 |
| HhaI | GCGC | 3 cut(s) | 25, 356, 455 |
| Hin1I | GRCGYC | 1 cut(s) | 354 |
| Hin1II | CATG | 3 cut(s) | 16, 344, 361 |
| Hin6I | GCGC | 3 cut(s) | 23, 354, 453 |
| HinP1I | GCGC | 3 cut(s) | 23, 354, 453 |
| HinfI | GANTC | 3 cut(s) | 104, 256, 437 |
| HphI | GGTGA | 1 cut(s) | 518 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 6 cut(s) | 101, 116, 341, 377, 434, 504 |
| HpyAV | CCTTC | 3 cut(s) | 152, 277, 533 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 325 |
| HpyCH4V | TGCA | 1 cut(s) | 112 |
| HpyF3I | CTNAG | 1 cut(s) | 459 |
| HpySE526I | ACGT | 2 cut(s) | 96, 325 |
| Hsp92I | GRCGYC | 1 cut(s) | 354 |
| Hsp92II | CATG | 3 cut(s) | 16, 344, 361 |
| HspAI | GCGC | 3 cut(s) | 23, 354, 453 |
| KasI | GGCGCC | 1 cut(s) | 353 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 2 cut(s) | 30, 475 |
| LpnPI | CCDG | 6 cut(s) | 129, 218, 296, 306, 489, 498 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 2 cut(s) | 408, 434 |
| MaeII | ACGT | 2 cut(s) | 96, 325 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MboII | GAAGA | 3 cut(s) | 62, 182, 265 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MlsI | TGGCCA | 1 cut(s) | 222 |
| MluCI | AATT | 3 cut(s) | 288, 298, 499 |
| MluNI | TGGCCA | 1 cut(s) | 222 |
| Mly113I | GGCGCC | 1 cut(s) | 354 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 446 |
| MnlI | CCTC | 4 cut(s) | 40, 50, 458, 529 |
| Mox20I | TGGCCA | 1 cut(s) | 222 |
| MscI | TGGCCA | 1 cut(s) | 222 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| Msp20I | TGGCCA | 1 cut(s) | 222 |
| Mva1269I | GAATGC | 1 cut(s) | 66 |
| MvnI | CGCG | 2 cut(s) | 23, 453 |
| NarI | GGCGCC | 1 cut(s) | 354 |
| NlaIII | CATG | 3 cut(s) | 16, 344, 361 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 421 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 411 |
| PctI | GAATGC | 1 cut(s) | 66 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PluTI | GGCGCC | 1 cut(s) | 357 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 421 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 446 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SetI | ASST | 7 cut(s) | 42, 99, 190, 269, 328, 348, 370 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SfoI | GGCGCC | 1 cut(s) | 355 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 288, 298, 499 |
| SspDI | GGCGCC | 1 cut(s) | 353 |
| SspMI | CTAG | 2 cut(s) | 408, 434 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| TaiI | ACGT | 2 cut(s) | 99, 328 |
| TaqI | TCGA | 1 cut(s) | 182 |
| TasI | AATT | 3 cut(s) | 288, 298, 499 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 3 cut(s) | 29, 329, 374 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| XbaI | TCTAGA | 1 cut(s) | 433 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XspI | CTAG | 2 cut(s) | 408, 434 |