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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 143, 187 |
| AcoI | YGGCCR | 1 cut(s) | 235 |
| AcsI | RAATTY | 1 cut(s) | 536 |
| AcvI | CACGTG | 1 cut(s) | 140 |
| AfaI | GTAC | 1 cut(s) | 356 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 91, 142, 143 |
| AgsI | TTSAA | 1 cut(s) | 484 |
| AjiI | CACGTC | 1 cut(s) | 244 |
| AjnI | CCWGG | 2 cut(s) | 232, 237 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 396, 428 |
| AluBI | AGCT | 1 cut(s) | 269 |
| AluI | AGCT | 1 cut(s) | 269 |
| Alw26I | GTCTC | 2 cut(s) | 400, 604 |
| AoxI | GGCC | 3 cut(s) | 81, 201, 235 |
| ApaI | GGGCCC | 1 cut(s) | 85 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| ApoI | RAATTY | 1 cut(s) | 536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 513 |
| AspS9I | GGNCC | 2 cut(s) | 81, 82 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 319 |
| BaeGI | GKGCMC | 1 cut(s) | 85 |
| BalI | TGGCCA | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 85 |
| BbrPI | CACGTG | 1 cut(s) | 140 |
| BbsI | GAAGAC | 2 cut(s) | 381, 584 |
| BbvI | GCAGC | 1 cut(s) | 299 |
| BccI | CCATC | 3 cut(s) | 200, 450, 604 |
| BciT130I | CCWGG | 2 cut(s) | 234, 239 |
| BcoDI | GTCTC | 2 cut(s) | 400, 604 |
| BfaI | CTAG | 2 cut(s) | 215, 446 |
| BfmI | CTRYAG | 1 cut(s) | 46 |
| BisI | GCNGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 1 cut(s) | 289 |
| Bme1390I | CCNGG | 2 cut(s) | 234, 239 |
| BmgBI | CACGTC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 2 cut(s) | 81, 82 |
| BmiI | GGNNCC | 3 cut(s) | 82, 83, 129 |
| BmrFI | CCNGG | 2 cut(s) | 234, 239 |
| BmsI | GCATC | 1 cut(s) | 202 |
| BpiI | GAAGAC | 2 cut(s) | 381, 584 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 3 cut(s) | 182, 248, 249 |
| BsaAI | YACGTR | 1 cut(s) | 140 |
| BsaI | GGTCTC | 1 cut(s) | 400 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 91, 142, 143 |
| Bse1I | ACTGG | 2 cut(s) | 157, 352 |
| Bse3DI | GCAATG | 1 cut(s) | 424 |
| BseBI | CCWGG | 2 cut(s) | 234, 239 |
| BseGI | GGATG | 1 cut(s) | 346 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 91, 142, 143 |
| BseMI | GCAATG | 1 cut(s) | 424 |
| BseNI | ACTGG | 2 cut(s) | 157, 352 |
| BseSI | GKGCMC | 1 cut(s) | 85 |
| BseXI | GCAGC | 1 cut(s) | 299 |
| BshFI | GGCC | 3 cut(s) | 83, 203, 237 |
| BslFI | GGGAC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 91, 142, 143 |
| BsmAI | GTCTC | 2 cut(s) | 400, 604 |
| BsmBI | CGTCTC | 1 cut(s) | 604 |
| BsmFI | GGGAC | 1 cut(s) | 89 |
| BsnI | GGCC | 3 cut(s) | 83, 203, 237 |
| Bso31I | GGTCTC | 1 cut(s) | 400 |
| Bsp120I | GGGCCC | 1 cut(s) | 81 |
| Bsp1286I | GDGCHC | 1 cut(s) | 85 |
| Bsp143I | GATC | 1 cut(s) | 552 |
| BspACI | CCGC | 2 cut(s) | 143, 187 |
| BspANI | GGCC | 3 cut(s) | 83, 203, 237 |
| BspHI | TCATGA | 1 cut(s) | 324 |
| BspLI | GGNNCC | 3 cut(s) | 82, 83, 129 |
| BspTNI | GGTCTC | 1 cut(s) | 400 |
| BsrDI | GCAATG | 1 cut(s) | 424 |
| BsrI | ACTGG | 2 cut(s) | 157, 352 |
| BssMI | GATC | 1 cut(s) | 552 |
| Bst2UI | CCWGG | 2 cut(s) | 234, 239 |
| Bst4CI | ACNGT | 1 cut(s) | 253 |
| BstBAI | YACGTR | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 191 |
| BstDEI | CTNAG | 1 cut(s) | 618 |
| BstF5I | GGATG | 1 cut(s) | 346 |
| BstKTI | GATC | 1 cut(s) | 555 |
| BstMAI | GTCTC | 2 cut(s) | 400, 604 |
| BstMBI | GATC | 1 cut(s) | 552 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 284 |
| BstNI | CCWGG | 2 cut(s) | 234, 239 |
| BstSCI | CCNGG | 2 cut(s) | 232, 237 |
| BstSFI | CTRYAG | 1 cut(s) | 46 |
| BstSLI | GKGCMC | 1 cut(s) | 85 |
| BstV1I | GCAGC | 1 cut(s) | 299 |
| BstV2I | GAAGAC | 2 cut(s) | 381, 584 |
| BsuRI | GGCC | 3 cut(s) | 83, 203, 237 |
| BtrI | CACGTC | 1 cut(s) | 244 |
| BtsCI | GGATG | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 1 cut(s) | 191 |
| CciI | TCATGA | 1 cut(s) | 324 |
| Cfr13I | GGNCC | 2 cut(s) | 81, 82 |
| Csp6I | GTAC | 1 cut(s) | 355 |
| CviAII | CATG | 4 cut(s) | 27, 132, 325, 425 |
| CviQI | GTAC | 1 cut(s) | 355 |
| DdeI | CTNAG | 1 cut(s) | 618 |
| DpnI | GATC | 1 cut(s) | 554 |
| DpnII | GATC | 1 cut(s) | 552 |
| EaeI | YGGCCR | 1 cut(s) | 235 |
| EciI | GGCGGA | 1 cut(s) | 176 |
| Eco24I | GRGCYC | 1 cut(s) | 85 |
| Eco31I | GGTCTC | 1 cut(s) | 400 |
| Eco72I | CACGTG | 1 cut(s) | 140 |
| EcoO109I | RGGNCCY | 1 cut(s) | 81 |
| EcoRI | GAATTC | 1 cut(s) | 536 |
| EcoRII | CCWGG | 2 cut(s) | 232, 237 |
| EcoT22I | ATGCAT | 1 cut(s) | 32 |
| EcoT38I | GRGCYC | 1 cut(s) | 85 |
| Esp3I | CGTCTC | 1 cut(s) | 604 |
| FaeI | CATG | 4 cut(s) | 30, 135, 328, 428 |
| FaiI | YATR | 9 cut(s) | 28, 32, 133, 326, 336, 338, 365, 426, 462 |
| FaqI | GGGAC | 1 cut(s) | 89 |
| FatI | CATG | 4 cut(s) | 26, 131, 324, 424 |
| FauI | CCCGC | 1 cut(s) | 136 |
| FauNDI | CATATG | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 1 cut(s) | 288 |
| FokI | GGATG | 1 cut(s) | 353 |
| FriOI | GRGCYC | 1 cut(s) | 85 |
| Fsp4HI | GCNGC | 1 cut(s) | 288 |
| FspBI | CTAG | 2 cut(s) | 215, 446 |
| GluI | GCNGC | 1 cut(s) | 288 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeIII | GGCC | 3 cut(s) | 83, 203, 237 |
| Hin1II | CATG | 4 cut(s) | 30, 135, 328, 428 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 6 cut(s) | 210, 223, 328, 344, 428, 580 |
| HphI | GGTGA | 2 cut(s) | 20, 319 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 508 |
| Hpy188III | TCNNGA | 5 cut(s) | 179, 227, 325, 440, 494 |
| HpyAV | CCTTC | 2 cut(s) | 378, 601 |
| HpyCH4III | ACNGT | 1 cut(s) | 253 |
| HpyCH4IV | ACGT | 2 cut(s) | 139, 243 |
| HpyCH4V | TGCA | 2 cut(s) | 30, 605 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 284 |
| HpyF3I | CTNAG | 1 cut(s) | 618 |
| HpySE526I | ACGT | 2 cut(s) | 139, 243 |
| Hsp92II | CATG | 4 cut(s) | 30, 135, 328, 428 |
| Kzo9I | GATC | 1 cut(s) | 552 |
| LmnI | GCTCC | 1 cut(s) | 127 |
| LpnPI | CCDG | 9 cut(s) | 98, 138, 203, 219, 224, 246, 251, 365, 453 |
| Lsp1109I | GCAGC | 1 cut(s) | 299 |
| LweI | GCATC | 1 cut(s) | 202 |
| MaeI | CTAG | 2 cut(s) | 215, 446 |
| MaeII | ACGT | 2 cut(s) | 139, 243 |
| MalI | GATC | 1 cut(s) | 554 |
| MboI | GATC | 1 cut(s) | 552 |
| MboII | GAAGA | 5 cut(s) | 76, 383, 386, 416, 589 |
| MhlI | GDGCHC | 1 cut(s) | 85 |
| MlsI | TGGCCA | 1 cut(s) | 237 |
| MluCI | AATT | 1 cut(s) | 536 |
| MluNI | TGGCCA | 1 cut(s) | 237 |
| MlyI | GAGTC | 3 cut(s) | 322, 422, 574 |
| MnlI | CCTC | 4 cut(s) | 32, 33, 332, 476 |
| Mox20I | TGGCCA | 1 cut(s) | 237 |
| Mph1103I | ATGCAT | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 513 |
| MscI | TGGCCA | 1 cut(s) | 237 |
| MseI | TTAA | 3 cut(s) | 293, 522, 530 |
| MslI | CAYNNNNRTG | 1 cut(s) | 339 |
| Msp20I | TGGCCA | 1 cut(s) | 237 |
| MspR9I | CCNGG | 2 cut(s) | 234, 239 |
| MvaI | CCWGG | 2 cut(s) | 234, 239 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 284 |
| NdeI | CATATG | 1 cut(s) | 336 |
| NdeII | GATC | 1 cut(s) | 552 |
| NlaIII | CATG | 4 cut(s) | 30, 135, 328, 428 |
| NlaIV | GGNNCC | 3 cut(s) | 82, 83, 129 |
| NsiI | ATGCAT | 1 cut(s) | 32 |
| PagI | TCATGA | 1 cut(s) | 324 |
| PdmI | GAANNNNTTC | 1 cut(s) | 513 |
| PfeI | GAWTC | 3 cut(s) | 210, 223, 344 |
| PkrI | GCNGC | 1 cut(s) | 289 |
| PleI | GAGTC | 3 cut(s) | 322, 422, 574 |
| PmaCI | CACGTG | 1 cut(s) | 140 |
| PmlI | CACGTG | 1 cut(s) | 140 |
| PpsI | GAGTC | 3 cut(s) | 322, 422, 574 |
| Ppu21I | YACGTR | 1 cut(s) | 140 |
| Psp6I | CCWGG | 2 cut(s) | 232, 237 |
| PspCI | CACGTG | 1 cut(s) | 140 |
| PspGI | CCWGG | 2 cut(s) | 232, 237 |
| PspN4I | GGNNCC | 3 cut(s) | 82, 83, 129 |
| PspOMI | GGGCCC | 1 cut(s) | 81 |
| PspPI | GGNCC | 2 cut(s) | 81, 82 |
| RsaI | GTAC | 1 cut(s) | 356 |
| RsaNI | GTAC | 1 cut(s) | 355 |
| RseI | CAYNNNNRTG | 1 cut(s) | 339 |
| SaqAI | TTAA | 3 cut(s) | 293, 522, 530 |
| SatI | GCNGC | 1 cut(s) | 288 |
| Sau3AI | GATC | 1 cut(s) | 552 |
| Sau96I | GGNCC | 2 cut(s) | 81, 82 |
| SchI | GAGTC | 3 cut(s) | 322, 422, 574 |
| ScrFI | CCNGG | 2 cut(s) | 234, 239 |
| SduI | GDGCHC | 1 cut(s) | 85 |
| SetI | ASST | 7 cut(s) | 43, 142, 246, 271, 309, 447, 593 |
| SfaNI | GCATC | 1 cut(s) | 202 |
| SfcI | CTRYAG | 1 cut(s) | 46 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 339 |
| SmlI | CTYRAG | 3 cut(s) | 197, 227, 264 |
| SmoI | CTYRAG | 3 cut(s) | 197, 227, 264 |
| Sse9I | AATT | 1 cut(s) | 536 |
| SsiI | CCGC | 2 cut(s) | 143, 187 |
| SspMI | CTAG | 2 cut(s) | 215, 446 |
| StyD4I | CCNGG | 2 cut(s) | 232, 237 |
| TaaI | ACNGT | 1 cut(s) | 253 |
| TaiI | ACGT | 2 cut(s) | 142, 246 |
| TaqI | TCGA | 1 cut(s) | 402 |
| TasI | AATT | 1 cut(s) | 536 |
| TfiI | GAWTC | 3 cut(s) | 210, 223, 344 |
| Tru1I | TTAA | 3 cut(s) | 293, 522, 530 |
| Tru9I | TTAA | 3 cut(s) | 293, 522, 530 |
| TseI | GCWGC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 2 cut(s) | 380, 384 |
| XapI | RAATTY | 1 cut(s) | 536 |
| XmnI | GAANNNNTTC | 1 cut(s) | 513 |
| XspI | CTAG | 2 cut(s) | 215, 446 |
| Zsp2I | ATGCAT | 1 cut(s) | 32 |