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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 285 |
| AatII | GACGTC | 1 cut(s) | 312 |
| Acc36I | ACCTGC | 1 cut(s) | 285 |
| AccII | CGCG | 1 cut(s) | 98 |
| AciI | CCGC | 2 cut(s) | 98, 313 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AcsI | RAATTY | 1 cut(s) | 662 |
| AcyI | GRCGYC | 1 cut(s) | 309 |
| AgsI | TTSAA | 1 cut(s) | 610 |
| AjiI | CACGTC | 3 cut(s) | 136, 230, 370 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 522, 554 |
| AluBI | AGCT | 1 cut(s) | 389 |
| AluI | AGCT | 1 cut(s) | 389 |
| Alw26I | GTCTC | 2 cut(s) | 526, 730 |
| Ama87I | CYCGRG | 1 cut(s) | 353 |
| AoxI | GGCC | 4 cut(s) | 8, 86, 99, 327 |
| ApeKI | GCWGC | 2 cut(s) | 63, 413 |
| ApoI | RAATTY | 1 cut(s) | 662 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 639 |
| AspS9I | GGNCC | 3 cut(s) | 87, 123, 169 |
| AsuC2I | CCSGG | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AvaI | CYCGRG | 1 cut(s) | 353 |
| AvaII | GGWCC | 2 cut(s) | 123, 169 |
| BanII | GRGCYC | 1 cut(s) | 151 |
| BbsI | GAAGAC | 2 cut(s) | 507, 710 |
| BbvI | GCAGC | 2 cut(s) | 75, 425 |
| BccI | CCATC | 3 cut(s) | 170, 449, 576 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 181, 215, 749 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BciVI | GTATCC | 1 cut(s) | 337 |
| BcnI | CCSGG | 1 cut(s) | 121 |
| BcoDI | GTCTC | 2 cut(s) | 526, 730 |
| BfaI | CTAG | 2 cut(s) | 360, 572 |
| BfmI | CTRYAG | 2 cut(s) | 12, 768 |
| BfuAI | ACCTGC | 1 cut(s) | 285 |
| BfuI | GTATCC | 1 cut(s) | 337 |
| BisI | GCNGC | 3 cut(s) | 64, 99, 414 |
| BlsI | GCNGC | 3 cut(s) | 65, 100, 415 |
| Bme1390I | CCNGG | 2 cut(s) | 121, 365 |
| Bme18I | GGWCC | 2 cut(s) | 123, 169 |
| BmeT110I | CYCGRG | 1 cut(s) | 353 |
| BmgBI | CACGTC | 3 cut(s) | 136, 230, 370 |
| BmgT120I | GGNCC | 3 cut(s) | 87, 123, 169 |
| BmiI | GGNNCC | 4 cut(s) | 124, 125, 148, 171 |
| BmrFI | CCNGG | 2 cut(s) | 121, 365 |
| BmsI | GCATC | 1 cut(s) | 676 |
| BpiI | GAAGAC | 2 cut(s) | 507, 710 |
| BpuEI | CTTGAG | 2 cut(s) | 308, 375 |
| BpuMI | CCSGG | 1 cut(s) | 121 |
| Bsa29I | ATCGAT | 1 cut(s) | 759 |
| BsaHI | GRCGYC | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 526 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 143, 173 |
| Bse118I | RCCGGY | 1 cut(s) | 6 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseCI | ATCGAT | 1 cut(s) | 759 |
| BseGI | GGATG | 3 cut(s) | 444, 472, 546 |
| BseMII | CTCAG | 1 cut(s) | 645 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BseXI | GCAGC | 2 cut(s) | 75, 425 |
| Bsh1236I | CGCG | 1 cut(s) | 98 |
| BshFI | GGCC | 4 cut(s) | 10, 88, 101, 329 |
| BshVI | ATCGAT | 1 cut(s) | 759 |
| BsiHKCI | CYCGRG | 1 cut(s) | 353 |
| BsiSI | CCGG | 2 cut(s) | 7, 120 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BsmAI | GTCTC | 2 cut(s) | 526, 730 |
| BsmBI | CGTCTC | 1 cut(s) | 730 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BsnI | GGCC | 4 cut(s) | 10, 88, 101, 329 |
| Bso31I | GGTCTC | 1 cut(s) | 526 |
| BsoBI | CYCGRG | 1 cut(s) | 353 |
| Bsp1286I | GDGCHC | 1 cut(s) | 151 |
| Bsp143I | GATC | 1 cut(s) | 678 |
| BspACI | CCGC | 2 cut(s) | 98, 313 |
| BspANI | GGCC | 4 cut(s) | 10, 88, 101, 329 |
| BspCNI | CTCAG | 1 cut(s) | 644 |
| BspDI | ATCGAT | 1 cut(s) | 759 |
| BspFNI | CGCG | 1 cut(s) | 98 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 4 cut(s) | 124, 125, 148, 171 |
| BspMAI | CTGCAG | 2 cut(s) | 16, 772 |
| BspMI | ACCTGC | 1 cut(s) | 285 |
| BspTNI | GGTCTC | 1 cut(s) | 526 |
| BsrFI | RCCGGY | 1 cut(s) | 6 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssAI | RCCGGY | 1 cut(s) | 6 |
| BssMI | GATC | 1 cut(s) | 678 |
| BssNI | GRCGYC | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 2 cut(s) | 94, 379 |
| BstACI | GRCGYC | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 387 |
| BstDEI | CTNAG | 3 cut(s) | 418, 631, 744 |
| BstF5I | GGATG | 3 cut(s) | 444, 472, 546 |
| BstFNI | CGCG | 1 cut(s) | 98 |
| BstKTI | GATC | 1 cut(s) | 681 |
| BstMAI | GTCTC | 2 cut(s) | 526, 730 |
| BstMBI | GATC | 1 cut(s) | 678 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 410 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstSCI | CCNGG | 2 cut(s) | 119, 363 |
| BstSFI | CTRYAG | 2 cut(s) | 12, 768 |
| BstUI | CGCG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 2 cut(s) | 75, 425 |
| BstV2I | GAAGAC | 2 cut(s) | 507, 710 |
| Bsu15I | ATCGAT | 1 cut(s) | 759 |
| BsuI | GTATCC | 1 cut(s) | 337 |
| BsuRI | GGCC | 4 cut(s) | 10, 88, 101, 329 |
| BsuTUI | ATCGAT | 1 cut(s) | 759 |
| BtgZI | GCGATG | 1 cut(s) | 704 |
| BtrI | CACGTC | 3 cut(s) | 136, 230, 370 |
| BtsCI | GGATG | 3 cut(s) | 444, 472, 546 |
| BtsI | GCAGTG | 3 cut(s) | 151, 197, 221 |
| BtsIMutI | CAGTG | 4 cut(s) | 90, 151, 197, 221 |
| BveI | ACCTGC | 1 cut(s) | 285 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 387 |
| CciI | TCATGA | 1 cut(s) | 304 |
| Cfr10I | RCCGGY | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 3 cut(s) | 87, 123, 169 |
| ClaI | ATCGAT | 1 cut(s) | 759 |
| CviAII | CATG | 4 cut(s) | 110, 166, 181, 305 |
| DdeI | CTNAG | 3 cut(s) | 418, 631, 744 |
| DpnI | GATC | 1 cut(s) | 680 |
| DpnII | GATC | 1 cut(s) | 678 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| EciI | GGCGGA | 1 cut(s) | 302 |
| Eco24I | GRGCYC | 1 cut(s) | 151 |
| Eco31I | GGTCTC | 1 cut(s) | 526 |
| Eco32I | GATATC | 1 cut(s) | 290 |
| Eco47I | GGWCC | 2 cut(s) | 123, 169 |
| Eco88I | CYCGRG | 1 cut(s) | 353 |
| EcoO109I | RGGNCCY | 1 cut(s) | 123 |
| EcoRI | GAATTC | 1 cut(s) | 662 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoRV | GATATC | 1 cut(s) | 290 |
| EcoT38I | GRGCYC | 1 cut(s) | 151 |
| Esp3I | CGTCTC | 1 cut(s) | 730 |
| FaeI | CATG | 4 cut(s) | 113, 169, 184, 308 |
| FaiI | YATR | 9 cut(s) | 111, 167, 182, 306, 462, 464, 491, 588, 737 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FatI | CATG | 4 cut(s) | 109, 165, 180, 304 |
| FauNDI | CATATG | 1 cut(s) | 462 |
| Fnu4HI | GCNGC | 3 cut(s) | 64, 99, 414 |
| FokI | GGATG | 3 cut(s) | 431, 479, 533 |
| FriOI | GRGCYC | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 3 cut(s) | 64, 99, 414 |
| FspBI | CTAG | 2 cut(s) | 360, 572 |
| GluI | GCNGC | 3 cut(s) | 64, 99, 414 |
| HaeIII | GGCC | 4 cut(s) | 10, 88, 101, 329 |
| HapII | CCGG | 2 cut(s) | 7, 120 |
| Hin1I | GRCGYC | 1 cut(s) | 309 |
| Hin1II | CATG | 4 cut(s) | 113, 169, 184, 308 |
| HincII | GTYRAC | 3 cut(s) | 139, 186, 233 |
| HindII | GTYRAC | 3 cut(s) | 139, 186, 233 |
| HinfI | GANTC | 5 cut(s) | 336, 454, 554, 706, 756 |
| HpaII | CCGG | 2 cut(s) | 7, 120 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 3 cut(s) | 139, 186, 233 |
| Hpy188I | TCNGA | 1 cut(s) | 634 |
| Hpy188III | TCNNGA | 5 cut(s) | 285, 305, 353, 392, 620 |
| Hpy8I | GTNNAC | 3 cut(s) | 139, 186, 233 |
| HpyAV | CCTTC | 3 cut(s) | 53, 504, 727 |
| HpyCH4III | ACNGT | 2 cut(s) | 94, 379 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 229, 309, 369 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 731, 770 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 410 |
| HpyF3I | CTNAG | 3 cut(s) | 418, 631, 744 |
| HpySE526I | ACGT | 4 cut(s) | 135, 229, 309, 369 |
| Hsp92I | GRCGYC | 1 cut(s) | 309 |
| Hsp92II | CATG | 4 cut(s) | 113, 169, 184, 308 |
| KflI | GGGWCCC | 1 cut(s) | 123 |
| Kzo9I | GATC | 1 cut(s) | 678 |
| LmnI | GCTCC | 4 cut(s) | 146, 268, 480, 602 |
| Lsp1109I | GCAGC | 2 cut(s) | 75, 425 |
| LweI | GCATC | 1 cut(s) | 676 |
| MaeI | CTAG | 2 cut(s) | 360, 572 |
| MaeII | ACGT | 4 cut(s) | 135, 229, 309, 369 |
| MaeIII | GTNAC | 3 cut(s) | 239, 551, 763 |
| MalI | GATC | 1 cut(s) | 680 |
| MboI | GATC | 1 cut(s) | 678 |
| MboII | GAAGA | 5 cut(s) | 41, 509, 512, 542, 715 |
| MhlI | GDGCHC | 1 cut(s) | 151 |
| MluCI | AATT | 3 cut(s) | 251, 348, 662 |
| MlyI | GAGTC | 3 cut(s) | 448, 548, 700 |
| MnlI | CCTC | 3 cut(s) | 78, 415, 602 |
| MroXI | GAANNNNTTC | 1 cut(s) | 639 |
| MseI | TTAA | 2 cut(s) | 648, 656 |
| MslI | CAYNNNNRTG | 3 cut(s) | 179, 449, 465 |
| MspI | CCGG | 2 cut(s) | 7, 120 |
| MspR9I | CCNGG | 2 cut(s) | 121, 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| MvnI | CGCG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 410 |
| NciI | CCSGG | 1 cut(s) | 121 |
| NdeI | CATATG | 1 cut(s) | 462 |
| NdeII | GATC | 1 cut(s) | 678 |
| NlaIII | CATG | 4 cut(s) | 113, 169, 184, 308 |
| NlaIV | GGNNCC | 4 cut(s) | 124, 125, 148, 171 |
| NmuCI | GTSAC | 1 cut(s) | 551 |
| PaeR7I | CTCGAG | 1 cut(s) | 353 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PaqCI | CACCTGC | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 639 |
| PfeI | GAWTC | 2 cut(s) | 336, 756 |
| PkrI | GCNGC | 3 cut(s) | 65, 100, 415 |
| PleI | GAGTC | 3 cut(s) | 448, 548, 700 |
| PpsI | GAGTC | 3 cut(s) | 448, 548, 700 |
| PpuMI | RGGWCCY | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 123 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 4 cut(s) | 124, 125, 148, 171 |
| PspPI | GGNCC | 3 cut(s) | 87, 123, 169 |
| PspPPI | RGGWCCY | 1 cut(s) | 123 |
| PstI | CTGCAG | 2 cut(s) | 16, 772 |
| RseI | CAYNNNNRTG | 3 cut(s) | 179, 449, 465 |
| SaqAI | TTAA | 2 cut(s) | 648, 656 |
| SatI | GCNGC | 3 cut(s) | 64, 99, 414 |
| Sau3AI | GATC | 1 cut(s) | 678 |
| Sau96I | GGNCC | 3 cut(s) | 87, 123, 169 |
| SchI | GAGTC | 3 cut(s) | 448, 548, 700 |
| ScrFI | CCNGG | 2 cut(s) | 121, 365 |
| SduI | GDGCHC | 1 cut(s) | 151 |
| SetI | ASST | 9 cut(s) | 138, 232, 246, 299, 312, 372, 391, 573, 719 |
| SfaNI | GCATC | 1 cut(s) | 676 |
| SfcI | CTRYAG | 2 cut(s) | 12, 768 |
| Sfr274I | CTCGAG | 1 cut(s) | 353 |
| SinI | GGWCC | 2 cut(s) | 123, 169 |
| SlaI | CTCGAG | 1 cut(s) | 353 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 179, 449, 465 |
| SmlI | CTYRAG | 3 cut(s) | 323, 353, 390 |
| SmoI | CTYRAG | 3 cut(s) | 323, 353, 390 |
| Sse9I | AATT | 3 cut(s) | 251, 348, 662 |
| SsiI | CCGC | 2 cut(s) | 98, 313 |
| SspMI | CTAG | 2 cut(s) | 360, 572 |
| StyD4I | CCNGG | 2 cut(s) | 119, 363 |
| TaaI | ACNGT | 2 cut(s) | 94, 379 |
| TaiI | ACGT | 4 cut(s) | 138, 232, 312, 372 |
| TaqI | TCGA | 4 cut(s) | 354, 528, 754, 759 |
| TasI | AATT | 3 cut(s) | 251, 348, 662 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 2 cut(s) | 336, 756 |
| Tru1I | TTAA | 2 cut(s) | 648, 656 |
| Tru9I | TTAA | 2 cut(s) | 648, 656 |
| TscAI | CASTG | 4 cut(s) | 97, 158, 204, 228 |
| TseFI | GTSAC | 1 cut(s) | 551 |
| TseI | GCWGC | 2 cut(s) | 63, 413 |
| Tsp45I | GTSAC | 1 cut(s) | 551 |
| TspDTI | ATGAA | 3 cut(s) | 293, 506, 510 |
| TspGWI | ACGGA | 1 cut(s) | 539 |
| TspRI | CASTG | 4 cut(s) | 97, 158, 204, 228 |
| VpaK11BI | GGWCC | 2 cut(s) | 123, 169 |
| XapI | RAATTY | 1 cut(s) | 662 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 337 |
| XhoI | CTCGAG | 1 cut(s) | 353 |
| XmnI | GAANNNNTTC | 1 cut(s) | 639 |
| XspI | CTAG | 2 cut(s) | 360, 572 |
| ZraI | GACGTC | 1 cut(s) | 310 |