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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 876 |
| AccB1I | GGYRCC | 1 cut(s) | 831 |
| AccII | CGCG | 1 cut(s) | 816 |
| AciI | CCGC | 2 cut(s) | 23, 74 |
| AclWI | GGATC | 1 cut(s) | 485 |
| AcoI | YGGCCR | 2 cut(s) | 114, 349 |
| AcsI | RAATTY | 2 cut(s) | 244, 575 |
| AcuI | CTGAAG | 1 cut(s) | 449 |
| AcyI | GRCGYC | 1 cut(s) | 832 |
| AfaI | GTAC | 1 cut(s) | 470 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 827 |
| AflIII | ACRYGT | 1 cut(s) | 357 |
| AgsI | TTSAA | 4 cut(s) | 11, 134, 149, 523 |
| AjiI | CACGTC | 1 cut(s) | 358 |
| AjnI | CCWGG | 1 cut(s) | 346 |
| AluBI | AGCT | 6 cut(s) | 7, 186, 377, 383, 709, 719 |
| AluI | AGCT | 6 cut(s) | 7, 186, 377, 383, 709, 719 |
| Alw26I | GTCTC | 1 cut(s) | 643 |
| AlwI | GGATC | 1 cut(s) | 485 |
| AoxI | GGCC | 3 cut(s) | 59, 114, 349 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| ApoI | RAATTY | 2 cut(s) | 244, 575 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 170, 202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 552 |
| AspLEI | GCGC | 2 cut(s) | 818, 834 |
| AspS9I | GGNCC | 1 cut(s) | 878 |
| AsuC2I | CCSGG | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 3 cut(s) | 12, 25, 63 |
| AvaII | GGWCC | 1 cut(s) | 878 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BalI | TGGCCA | 1 cut(s) | 351 |
| BanI | GGYRCC | 1 cut(s) | 831 |
| BbsI | GAAGAC | 1 cut(s) | 623 |
| BbvI | GCAGC | 1 cut(s) | 413 |
| BccI | CCATC | 6 cut(s) | 25, 115, 125, 181, 314, 643 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BciT130I | CCWGG | 1 cut(s) | 348 |
| BciVI | GTATCC | 1 cut(s) | 853 |
| BcnI | CCSGG | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 643 |
| BfmI | CTRYAG | 1 cut(s) | 681 |
| BfoI | RGCGCY | 1 cut(s) | 835 |
| BfuI | GTATCC | 1 cut(s) | 853 |
| BglII | AGATCT | 1 cut(s) | 151 |
| BisI | GCNGC | 1 cut(s) | 402 |
| BlsI | GCNGC | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 2 cut(s) | 163, 348 |
| Bme18I | GGWCC | 1 cut(s) | 878 |
| BmgBI | CACGTC | 1 cut(s) | 358 |
| BmgT120I | GGNCC | 1 cut(s) | 878 |
| BmiI | GGNNCC | 2 cut(s) | 503, 833 |
| BmrFI | CCNGG | 2 cut(s) | 163, 348 |
| BmsI | GCATC | 3 cut(s) | 316, 567, 699 |
| BpiI | GAAGAC | 1 cut(s) | 623 |
| BpuEI | CTTGAG | 3 cut(s) | 296, 362, 363 |
| BpuMI | CCSGG | 1 cut(s) | 163 |
| Bsa29I | ATCGAT | 1 cut(s) | 672 |
| BsaHI | GRCGYC | 1 cut(s) | 832 |
| BsaJI | CCNNGG | 1 cut(s) | 62 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 827 |
| Bse1I | ACTGG | 1 cut(s) | 271 |
| BseBI | CCWGG | 1 cut(s) | 348 |
| BseCI | ATCGAT | 1 cut(s) | 672 |
| BseDI | CCNNGG | 1 cut(s) | 62 |
| BseGI | GGATG | 4 cut(s) | 228, 432, 460, 747 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 827 |
| BseMII | CTCAG | 1 cut(s) | 51 |
| BseNI | ACTGG | 1 cut(s) | 271 |
| BseRI | GAGGAG | 1 cut(s) | 435 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| BseXI | GCAGC | 1 cut(s) | 413 |
| BsgI | GTGCAG | 1 cut(s) | 491 |
| Bsh1236I | CGCG | 1 cut(s) | 816 |
| BshFI | GGCC | 3 cut(s) | 61, 116, 351 |
| BshNI | GGYRCC | 1 cut(s) | 831 |
| BshVI | ATCGAT | 1 cut(s) | 672 |
| BsiSI | CCGG | 1 cut(s) | 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 827 |
| BsmAI | GTCTC | 1 cut(s) | 643 |
| BsnI | GGCC | 3 cut(s) | 61, 116, 351 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp143I | GATC | 4 cut(s) | 27, 151, 200, 490 |
| BspACI | CCGC | 2 cut(s) | 23, 74 |
| BspANI | GGCC | 3 cut(s) | 61, 116, 351 |
| BspCNI | CTCAG | 1 cut(s) | 50 |
| BspDI | ATCGAT | 1 cut(s) | 672 |
| BspFNI | CGCG | 1 cut(s) | 816 |
| BspHI | TCATGA | 1 cut(s) | 703 |
| BspLI | GGNNCC | 2 cut(s) | 503, 833 |
| BspPI | GGATC | 1 cut(s) | 485 |
| BspT107I | GGYRCC | 1 cut(s) | 831 |
| BsrI | ACTGG | 1 cut(s) | 271 |
| BssECI | CCNNGG | 1 cut(s) | 62 |
| BssMI | GATC | 4 cut(s) | 27, 151, 200, 490 |
| BssNI | GRCGYC | 1 cut(s) | 832 |
| BssT1I | CCWWGG | 1 cut(s) | 62 |
| Bst2UI | CCWGG | 1 cut(s) | 348 |
| Bst6I | CTCTTC | 1 cut(s) | 135 |
| BstACI | GRCGYC | 1 cut(s) | 832 |
| BstC8I | GCNNGC | 3 cut(s) | 78, 305, 375 |
| BstDEI | CTNAG | 3 cut(s) | 37, 406, 854 |
| BstF5I | GGATG | 4 cut(s) | 228, 432, 460, 747 |
| BstFNI | CGCG | 1 cut(s) | 816 |
| BstH2I | RGCGCY | 1 cut(s) | 835 |
| BstHHI | GCGC | 2 cut(s) | 818, 834 |
| BstKTI | GATC | 4 cut(s) | 30, 154, 203, 493 |
| BstMAI | GTCTC | 1 cut(s) | 643 |
| BstMBI | GATC | 4 cut(s) | 27, 151, 200, 490 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 389, 398 |
| BstNI | CCWGG | 1 cut(s) | 348 |
| BstSCI | CCNGG | 2 cut(s) | 161, 346 |
| BstSFI | CTRYAG | 1 cut(s) | 681 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstUI | CGCG | 1 cut(s) | 816 |
| BstV1I | GCAGC | 1 cut(s) | 413 |
| BstV2I | GAAGAC | 1 cut(s) | 623 |
| BstX2I | RGATCY | 2 cut(s) | 151, 490 |
| BstYI | RGATCY | 2 cut(s) | 151, 490 |
| Bsu15I | ATCGAT | 1 cut(s) | 672 |
| BsuI | GTATCC | 1 cut(s) | 853 |
| BsuRI | GGCC | 3 cut(s) | 61, 116, 351 |
| BsuTUI | ATCGAT | 1 cut(s) | 672 |
| BtgZI | GCGATG | 1 cut(s) | 617 |
| BtrI | CACGTC | 1 cut(s) | 358 |
| BtsCI | GGATG | 4 cut(s) | 228, 432, 460, 747 |
| Cac8I | GCNNGC | 3 cut(s) | 78, 305, 375 |
| CciI | TCATGA | 1 cut(s) | 703 |
| CfoI | GCGC | 2 cut(s) | 818, 834 |
| Cfr13I | GGNCC | 1 cut(s) | 878 |
| ClaI | ATCGAT | 1 cut(s) | 672 |
| Csp6I | GTAC | 1 cut(s) | 469 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 200, 235 |
| CviAII | CATG | 3 cut(s) | 328, 704, 740 |
| CviQI | GTAC | 1 cut(s) | 469 |
| DdeI | CTNAG | 3 cut(s) | 37, 406, 854 |
| DinI | GGCGCC | 1 cut(s) | 833 |
| DpnI | GATC | 4 cut(s) | 29, 153, 202, 492 |
| DpnII | GATC | 4 cut(s) | 27, 151, 200, 490 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 876 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 876 |
| EaeI | YGGCCR | 2 cut(s) | 114, 349 |
| Eam1104I | CTCTTC | 1 cut(s) | 135 |
| EarI | CTCTTC | 1 cut(s) | 135 |
| Eco130I | CCWWGG | 1 cut(s) | 62 |
| Eco32I | GATATC | 2 cut(s) | 69, 278 |
| Eco47I | GGWCC | 1 cut(s) | 878 |
| Eco57I | CTGAAG | 1 cut(s) | 449 |
| EcoRI | GAATTC | 1 cut(s) | 575 |
| EcoRII | CCWGG | 1 cut(s) | 346 |
| EcoRV | GATATC | 2 cut(s) | 69, 278 |
| EcoT14I | CCWWGG | 1 cut(s) | 62 |
| EgeI | GGCGCC | 1 cut(s) | 833 |
| EheI | GGCGCC | 1 cut(s) | 833 |
| ErhI | CCWWGG | 1 cut(s) | 62 |
| FaeI | CATG | 3 cut(s) | 331, 707, 743 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 608, 640 |
| FatI | CATG | 3 cut(s) | 327, 703, 739 |
| FauNDI | CATATG | 1 cut(s) | 450 |
| Fnu4HI | GCNGC | 1 cut(s) | 402 |
| FokI | GGATG | 4 cut(s) | 235, 419, 467, 734 |
| Fsp4HI | GCNGC | 1 cut(s) | 402 |
| GlaI | GCGC | 2 cut(s) | 817, 833 |
| GluI | GCNGC | 1 cut(s) | 402 |
| HaeII | RGCGCY | 1 cut(s) | 835 |
| HaeIII | GGCC | 3 cut(s) | 61, 116, 351 |
| HapII | CCGG | 1 cut(s) | 162 |
| HhaI | GCGC | 2 cut(s) | 818, 834 |
| Hin1I | GRCGYC | 1 cut(s) | 832 |
| Hin1II | CATG | 3 cut(s) | 331, 707, 743 |
| Hin6I | GCGC | 2 cut(s) | 816, 832 |
| HinP1I | GCGC | 2 cut(s) | 816, 832 |
| HincII | GTYRAC | 1 cut(s) | 363 |
| HindII | GTYRAC | 1 cut(s) | 363 |
| HindIII | AAGCTT | 3 cut(s) | 5, 184, 381 |
| HinfI | GANTC | 7 cut(s) | 324, 410, 442, 458, 619, 669, 774 |
| HpaII | CCGG | 1 cut(s) | 162 |
| HphI | GGTGA | 3 cut(s) | 12, 25, 63 |
| Hpy166II | GTNNAC | 1 cut(s) | 363 |
| Hpy188I | TCNGA | 4 cut(s) | 40, 178, 547, 798 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 273, 313, 341, 533, 704, 771 |
| Hpy8I | GTNNAC | 1 cut(s) | 363 |
| Hpy99I | CGWCG | 1 cut(s) | 194 |
| HpyAV | CCTTC | 2 cut(s) | 492, 640 |
| HpyCH4IV | ACGT | 2 cut(s) | 357, 871 |
| HpyCH4V | TGCA | 3 cut(s) | 508, 644, 690 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 389, 398 |
| HpyF3I | CTNAG | 3 cut(s) | 37, 406, 854 |
| HpySE526I | ACGT | 2 cut(s) | 357, 871 |
| Hsp92I | GRCGYC | 1 cut(s) | 832 |
| Hsp92II | CATG | 3 cut(s) | 331, 707, 743 |
| HspAI | GCGC | 2 cut(s) | 816, 832 |
| KasI | GGCGCC | 1 cut(s) | 831 |
| Kzo9I | GATC | 4 cut(s) | 27, 151, 200, 490 |
| LmnI | GCTCC | 3 cut(s) | 256, 507, 716 |
| Lsp1109I | GCAGC | 1 cut(s) | 413 |
| LweI | GCATC | 3 cut(s) | 316, 567, 699 |
| MaeII | ACGT | 2 cut(s) | 357, 871 |
| MaeIII | GTNAC | 3 cut(s) | 52, 676, 727 |
| MalI | GATC | 4 cut(s) | 29, 153, 202, 492 |
| MboI | GATC | 4 cut(s) | 27, 151, 200, 490 |
| MboII | GAAGA | 6 cut(s) | 122, 161, 497, 500, 628, 769 |
| MflI | RGATCY | 2 cut(s) | 151, 490 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MlsI | TGGCCA | 1 cut(s) | 351 |
| MluCI | AATT | 6 cut(s) | 195, 244, 336, 575, 766, 805 |
| MluNI | TGGCCA | 1 cut(s) | 351 |
| Mly113I | GGCGCC | 1 cut(s) | 832 |
| MlyI | GAGTC | 3 cut(s) | 419, 436, 613 |
| MnlI | CCTC | 5 cut(s) | 46, 53, 138, 456, 821 |
| Mox20I | TGGCCA | 1 cut(s) | 351 |
| MroXI | GAANNNNTTC | 1 cut(s) | 552 |
| MscI | TGGCCA | 1 cut(s) | 351 |
| MseI | TTAA | 2 cut(s) | 569, 657 |
| MslI | CAYNNNNRTG | 3 cut(s) | 437, 453, 752 |
| Msp20I | TGGCCA | 1 cut(s) | 351 |
| MspI | CCGG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 2 cut(s) | 163, 348 |
| MvaI | CCWGG | 1 cut(s) | 348 |
| MvnI | CGCG | 1 cut(s) | 816 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 389, 398 |
| NarI | GGCGCC | 1 cut(s) | 832 |
| NciI | CCSGG | 1 cut(s) | 163 |
| NdeI | CATATG | 1 cut(s) | 450 |
| NdeII | GATC | 4 cut(s) | 27, 151, 200, 490 |
| NlaIII | CATG | 3 cut(s) | 331, 707, 743 |
| NlaIV | GGNNCC | 2 cut(s) | 503, 833 |
| NmeAIII | GCCGAG | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 727 |
| PagI | TCATGA | 1 cut(s) | 703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 552 |
| PfeI | GAWTC | 4 cut(s) | 324, 458, 669, 774 |
| PkrI | GCNGC | 1 cut(s) | 403 |
| PleI | GAGTC | 3 cut(s) | 418, 436, 613 |
| PluTI | GGCGCC | 1 cut(s) | 835 |
| PpsI | GAGTC | 3 cut(s) | 418, 436, 613 |
| Psp6I | CCWGG | 1 cut(s) | 346 |
| PspGI | CCWGG | 1 cut(s) | 346 |
| PspN4I | GGNNCC | 2 cut(s) | 503, 833 |
| PspPI | GGNCC | 1 cut(s) | 878 |
| PsuI | RGATCY | 2 cut(s) | 151, 490 |
| RsaI | GTAC | 1 cut(s) | 470 |
| RsaNI | GTAC | 1 cut(s) | 469 |
| RseI | CAYNNNNRTG | 3 cut(s) | 437, 453, 752 |
| SaqAI | TTAA | 2 cut(s) | 569, 657 |
| SatI | GCNGC | 1 cut(s) | 402 |
| Sau3AI | GATC | 4 cut(s) | 27, 151, 200, 490 |
| Sau96I | GGNCC | 1 cut(s) | 878 |
| SchI | GAGTC | 3 cut(s) | 419, 436, 613 |
| ScrFI | CCNGG | 2 cut(s) | 163, 348 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SfaNI | GCATC | 3 cut(s) | 316, 567, 699 |
| SfcI | CTRYAG | 1 cut(s) | 681 |
| SfoI | GGCGCC | 1 cut(s) | 833 |
| SinI | GGWCC | 1 cut(s) | 878 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 437, 453, 752 |
| SmlI | CTYRAG | 3 cut(s) | 311, 341, 378 |
| SmoI | CTYRAG | 3 cut(s) | 311, 341, 378 |
| Sse9I | AATT | 6 cut(s) | 195, 244, 336, 575, 766, 805 |
| SsiI | CCGC | 2 cut(s) | 23, 74 |
| SspDI | GGCGCC | 1 cut(s) | 831 |
| StyD4I | CCNGG | 2 cut(s) | 161, 346 |
| StyI | CCWWGG | 1 cut(s) | 62 |
| TaiI | ACGT | 2 cut(s) | 360, 874 |
| TaqI | TCGA | 4 cut(s) | 189, 667, 672, 770 |
| TasI | AATT | 6 cut(s) | 195, 244, 336, 575, 766, 805 |
| TfiI | GAWTC | 4 cut(s) | 324, 458, 669, 774 |
| Tru1I | TTAA | 2 cut(s) | 569, 657 |
| Tru9I | TTAA | 2 cut(s) | 569, 657 |
| TseFI | GTSAC | 1 cut(s) | 727 |
| TseI | GCWGC | 1 cut(s) | 401 |
| Tsp45I | GTSAC | 1 cut(s) | 727 |
| TspDTI | ATGAA | 6 cut(s) | 17, 79, 494, 498, 692, 737 |
| VpaK11BI | GGWCC | 1 cut(s) | 878 |
| XapI | RAATTY | 2 cut(s) | 244, 575 |
| XmnI | GAANNNNTTC | 1 cut(s) | 552 |