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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 504, 662 |
| AccI | GTMKAC | 1 cut(s) | 533 |
| AccIII | TCCGGA | 1 cut(s) | 469 |
| AciI | CCGC | 3 cut(s) | 79, 583, 804 |
| AclWI | GGATC | 3 cut(s) | 371, 441, 545 |
| AcoI | YGGCCR | 1 cut(s) | 649 |
| AcsI | RAATTY | 2 cut(s) | 248, 774 |
| AcuI | CTGAAG | 1 cut(s) | 810 |
| AcyI | GRCGYC | 2 cut(s) | 505, 663 |
| AdeI | CACNNNGTG | 1 cut(s) | 844 |
| AgsI | TTSAA | 2 cut(s) | 166, 700 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 382, 392, 785, 836 |
| AluI | AGCT | 6 cut(s) | 155, 161, 382, 392, 785, 836 |
| Alw21I | GWGCWC | 2 cut(s) | 384, 787 |
| Alw26I | GTCTC | 3 cut(s) | 316, 406, 630 |
| AlwI | GGATC | 3 cut(s) | 371, 441, 545 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 469 |
| AoxI | GGCC | 1 cut(s) | 649 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 248, 774 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 465 |
| AspLEI | GCGC | 3 cut(s) | 507, 665, 706 |
| AsuHPI | GGTGA | 1 cut(s) | 793 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 772 |
| BalI | TGGCCA | 1 cut(s) | 651 |
| BanI | GGYRCC | 2 cut(s) | 504, 662 |
| BanII | GRGCYC | 2 cut(s) | 384, 787 |
| BbsI | GAAGAC | 1 cut(s) | 296 |
| Bbv12I | GWGCWC | 2 cut(s) | 384, 787 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 215, 690 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 3 cut(s) | 316, 406, 630 |
| BfaI | CTAG | 2 cut(s) | 126, 872 |
| BfmI | CTRYAG | 2 cut(s) | 96, 144 |
| BfoI | RGCGCY | 3 cut(s) | 508, 666, 707 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 4 cut(s) | 474, 506, 605, 664 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 296 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 345 |
| BsaHI | GRCGYC | 2 cut(s) | 505, 663 |
| BsaJI | CCNNGG | 1 cut(s) | 450 |
| BsaWI | WCCGGW | 1 cut(s) | 469 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| BseAI | TCCGGA | 1 cut(s) | 469 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 345 |
| BseDI | CCNNGG | 1 cut(s) | 450 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseMII | CTCAG | 1 cut(s) | 750 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 772 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 651 |
| BshNI | GGYRCC | 2 cut(s) | 504, 662 |
| BshVI | ATCGAT | 1 cut(s) | 345 |
| BsiHKAI | GWGCWC | 2 cut(s) | 384, 787 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 470 |
| BsmAI | GTCTC | 3 cut(s) | 316, 406, 630 |
| BsmBI | CGTCTC | 1 cut(s) | 316 |
| BsnI | GGCC | 1 cut(s) | 651 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 384, 772, 787 |
| Bsp13I | TCCGGA | 1 cut(s) | 469 |
| Bsp143I | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| BspACI | CCGC | 3 cut(s) | 79, 583, 804 |
| BspANI | GGCC | 1 cut(s) | 651 |
| BspCNI | CTCAG | 1 cut(s) | 751 |
| BspDI | ATCGAT | 1 cut(s) | 345 |
| BspEI | TCCGGA | 1 cut(s) | 469 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 4 cut(s) | 474, 506, 605, 664 |
| BspPI | GGATC | 3 cut(s) | 371, 441, 545 |
| BspT107I | GGYRCC | 2 cut(s) | 504, 662 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 450 |
| BssMI | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| BssNAI | GTATAC | 1 cut(s) | 534 |
| BssNI | GRCGYC | 2 cut(s) | 505, 663 |
| Bst1107I | GTATAC | 1 cut(s) | 534 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 2 cut(s) | 505, 663 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 6 cut(s) | 184, 330, 495, 527, 675, 759 |
| BstDSI | CCRYGG | 1 cut(s) | 450 |
| BstEII | GGTNACC | 1 cut(s) | 578 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstH2I | RGCGCY | 3 cut(s) | 508, 666, 707 |
| BstHHI | GCGC | 3 cut(s) | 507, 665, 706 |
| BstKTI | GATC | 6 cut(s) | 267, 366, 449, 553, 859, 871 |
| BstMAI | GTCTC | 3 cut(s) | 316, 406, 630 |
| BstMBI | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 511, 701, 812, 833 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 578 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 2 cut(s) | 96, 144 |
| BstSLI | GKGCMC | 1 cut(s) | 772 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 296 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 659 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| BstZ17I | GTATAC | 1 cut(s) | 534 |
| Bsu15I | ATCGAT | 1 cut(s) | 345 |
| BsuRI | GGCC | 1 cut(s) | 651 |
| BsuTUI | ATCGAT | 1 cut(s) | 345 |
| BtgI | CCRYGG | 1 cut(s) | 450 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CfoI | GCGC | 3 cut(s) | 507, 665, 706 |
| ClaI | ATCGAT | 1 cut(s) | 345 |
| CseI | GACGC | 1 cut(s) | 701 |
| CviAII | CATG | 4 cut(s) | 377, 413, 600, 653 |
| DdeI | CTNAG | 6 cut(s) | 184, 330, 495, 527, 675, 759 |
| DinI | GGCGCC | 2 cut(s) | 506, 664 |
| DpnI | GATC | 6 cut(s) | 266, 365, 448, 552, 858, 870 |
| DpnII | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| DraIII | CACNNNGTG | 1 cut(s) | 844 |
| EaeI | YGGCCR | 1 cut(s) | 649 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 382, 785 |
| Eco24I | GRGCYC | 2 cut(s) | 384, 787 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 382, 785 |
| Eco57I | CTGAAG | 1 cut(s) | 810 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 578 |
| EcoICRI | GAGCTC | 2 cut(s) | 382, 785 |
| EcoO65I | GGTNACC | 1 cut(s) | 578 |
| EcoRI | GAATTC | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 384, 787 |
| EgeI | GGCGCC | 2 cut(s) | 506, 664 |
| EheI | GGCGCC | 2 cut(s) | 506, 664 |
| Esp3I | CGTCTC | 1 cut(s) | 316 |
| FaeI | CATG | 4 cut(s) | 380, 416, 603, 656 |
| FatI | CATG | 4 cut(s) | 376, 412, 599, 652 |
| FblI | GTMKAC | 1 cut(s) | 533 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 197 |
| FriOI | GRGCYC | 2 cut(s) | 384, 787 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 872 |
| GlaI | GCGC | 3 cut(s) | 506, 664, 705 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 3 cut(s) | 508, 666, 707 |
| HaeIII | GGCC | 1 cut(s) | 651 |
| HapII | CCGG | 1 cut(s) | 470 |
| HgaI | GACGC | 1 cut(s) | 701 |
| HhaI | GCGC | 3 cut(s) | 507, 665, 706 |
| Hin1I | GRCGYC | 2 cut(s) | 505, 663 |
| Hin1II | CATG | 4 cut(s) | 380, 416, 603, 656 |
| Hin6I | GCGC | 3 cut(s) | 505, 663, 704 |
| HinP1I | GCGC | 3 cut(s) | 505, 663, 704 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 220, 292, 342 |
| HpaII | CCGG | 1 cut(s) | 470 |
| HphI | GGTGA | 1 cut(s) | 793 |
| Hpy166II | GTNNAC | 2 cut(s) | 534, 617 |
| Hpy188I | TCNGA | 3 cut(s) | 406, 550, 760 |
| Hpy8I | GTNNAC | 2 cut(s) | 534, 617 |
| HpyAV | CCTTC | 2 cut(s) | 313, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 619 |
| HpyCH4V | TGCA | 3 cut(s) | 275, 317, 356 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 511, 701, 812, 833 |
| HpyF3I | CTNAG | 6 cut(s) | 184, 330, 495, 527, 675, 759 |
| HpySE526I | ACGT | 2 cut(s) | 135, 619 |
| Hsp92I | GRCGYC | 2 cut(s) | 505, 663 |
| Hsp92II | CATG | 4 cut(s) | 380, 416, 603, 656 |
| HspAI | GCGC | 3 cut(s) | 505, 663, 704 |
| KasI | GGCGCC | 2 cut(s) | 504, 662 |
| Kpn2I | TCCGGA | 1 cut(s) | 469 |
| Kzo9I | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| LmnI | GCTCC | 3 cut(s) | 34, 389, 790 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 872 |
| MaeII | ACGT | 2 cut(s) | 135, 619 |
| MaeIII | GTNAC | 3 cut(s) | 5, 578, 799 |
| MalI | GATC | 6 cut(s) | 266, 365, 448, 552, 858, 870 |
| MboI | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| MboII | GAAGA | 6 cut(s) | 301, 442, 621, 803, 866, 875 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MhlI | GDGCHC | 3 cut(s) | 384, 772, 787 |
| MlsI | TGGCCA | 1 cut(s) | 651 |
| MluCI | AATT | 5 cut(s) | 17, 248, 439, 478, 774 |
| MluNI | TGGCCA | 1 cut(s) | 651 |
| Mly113I | GGCGCC | 2 cut(s) | 505, 663 |
| MlyI | GAGTC | 2 cut(s) | 214, 286 |
| MnlI | CCTC | 6 cut(s) | 181, 494, 502, 625, 655, 717 |
| Mox20I | TGGCCA | 1 cut(s) | 651 |
| MroI | TCCGGA | 1 cut(s) | 469 |
| MroXI | GAANNNNTTC | 1 cut(s) | 465 |
| MscI | TGGCCA | 1 cut(s) | 651 |
| MseI | TTAA | 3 cut(s) | 234, 242, 285 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 657, 687 |
| Msp20I | TGGCCA | 1 cut(s) | 651 |
| MspI | CCGG | 1 cut(s) | 470 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 167, 176, 188, 197, 511, 701, 812, 833 |
| NarI | GGCGCC | 2 cut(s) | 505, 663 |
| NdeII | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| NlaIII | CATG | 4 cut(s) | 380, 416, 603, 656 |
| NlaIV | GGNNCC | 4 cut(s) | 474, 506, 605, 664 |
| NmuCI | GTSAC | 1 cut(s) | 799 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 465 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 342 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 286 |
| PluTI | GGCGCC | 2 cut(s) | 508, 666 |
| PpsI | GAGTC | 2 cut(s) | 214, 286 |
| Psp124BI | GAGCTC | 2 cut(s) | 384, 787 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 578 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 4 cut(s) | 474, 506, 605, 664 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 657, 687 |
| SacI | GAGCTC | 2 cut(s) | 384, 787 |
| SaqAI | TTAA | 3 cut(s) | 234, 242, 285 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 6 cut(s) | 264, 363, 446, 550, 856, 868 |
| SchI | GAGTC | 2 cut(s) | 214, 286 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 384, 772, 787 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 2 cut(s) | 96, 144 |
| SfoI | GGCGCC | 2 cut(s) | 506, 664 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 657, 687 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 5 cut(s) | 17, 248, 439, 478, 774 |
| SsiI | CCGC | 3 cut(s) | 79, 583, 804 |
| SspDI | GGCGCC | 2 cut(s) | 504, 662 |
| SspMI | CTAG | 2 cut(s) | 126, 872 |
| SstI | GAGCTC | 2 cut(s) | 384, 787 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 622 |
| TaqI | TCGA | 6 cut(s) | 120, 340, 345, 443, 723, 745 |
| TasI | AATT | 5 cut(s) | 17, 248, 439, 478, 774 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 342 |
| Tru1I | TTAA | 3 cut(s) | 234, 242, 285 |
| Tru9I | TTAA | 3 cut(s) | 234, 242, 285 |
| TseFI | GTSAC | 1 cut(s) | 799 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 799 |
| TspDTI | ATGAA | 2 cut(s) | 365, 410 |
| TspGWI | ACGGA | 2 cut(s) | 376, 439 |
| XapI | RAATTY | 2 cut(s) | 248, 774 |
| XbaI | TCTAGA | 1 cut(s) | 871 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 533 |
| XmnI | GAANNNNTTC | 1 cut(s) | 465 |
| XspI | CTAG | 2 cut(s) | 126, 872 |