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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 322 |
| AccB1I | GGYRCC | 2 cut(s) | 233, 485 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AccII | CGCG | 2 cut(s) | 127, 268 |
| AciI | CCGC | 8 cut(s) | 192, 231, 243, 483, 546, 789, 1013, 1279 |
| AclWI | GGATC | 2 cut(s) | 171, 763 |
| AcsI | RAATTY | 3 cut(s) | 598, 1020, 1346 |
| AcyI | GRCGYC | 4 cut(s) | 103, 234, 407, 486 |
| AfaI | GTAC | 3 cut(s) | 41, 59, 425 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 138, 206, 500, 927, 997 |
| AflIII | ACRYGT | 1 cut(s) | 562 |
| AgsI | TTSAA | 3 cut(s) | 9, 98, 593 |
| AjiI | CACGTC | 3 cut(s) | 781, 865, 1054 |
| AjnI | CCWGG | 3 cut(s) | 119, 199, 1047 |
| AluBI | AGCT | 7 cut(s) | 50, 534, 766, 813, 837, 1073, 1079 |
| AluI | AGCT | 7 cut(s) | 50, 534, 766, 813, 837, 1073, 1079 |
| Alw26I | GTCTC | 5 cut(s) | 349, 901, 971, 1210, 1414 |
| AlwI | GGATC | 2 cut(s) | 171, 763 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 766 |
| Ama87I | CYCGRG | 1 cut(s) | 1037 |
| AoxI | GGCC | 2 cut(s) | 502, 664 |
| ApoI | RAATTY | 3 cut(s) | 598, 1020, 1346 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1323 |
| AspLEI | GCGC | 4 cut(s) | 127, 129, 236, 488 |
| AspS9I | GGNCC | 1 cut(s) | 791 |
| AsuC2I | CCSGG | 1 cut(s) | 929 |
| AsuHPI | GGTGA | 1 cut(s) | 560 |
| AvaI | CYCGRG | 1 cut(s) | 1037 |
| AvaII | GGWCC | 1 cut(s) | 791 |
| AxyI | CCTNAGG | 1 cut(s) | 238 |
| BanI | GGYRCC | 2 cut(s) | 233, 485 |
| BanII | GRGCYC | 2 cut(s) | 120, 721 |
| BbsI | GAAGAC | 2 cut(s) | 269, 1191 |
| BccI | CCATC | 4 cut(s) | 200, 579, 1260, 1414 |
| BciT130I | CCWGG | 3 cut(s) | 121, 201, 1049 |
| BciVI | GTATCC | 1 cut(s) | 1021 |
| BcnI | CCSGG | 1 cut(s) | 929 |
| BcoDI | GTCTC | 5 cut(s) | 349, 901, 971, 1210, 1414 |
| BfaI | CTAG | 3 cut(s) | 357, 1044, 1256 |
| BfoI | RGCGCY | 2 cut(s) | 237, 489 |
| BfuAI | ACCTGC | 1 cut(s) | 322 |
| BfuI | GTATCC | 1 cut(s) | 1021 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1106 |
| BglII | AGATCT | 1 cut(s) | 611 |
| Bme1390I | CCNGG | 4 cut(s) | 121, 201, 929, 1049 |
| Bme18I | GGWCC | 1 cut(s) | 791 |
| BmeT110I | CYCGRG | 1 cut(s) | 1037 |
| BmgBI | CACGTC | 3 cut(s) | 781, 865, 1054 |
| BmgT120I | GGNCC | 1 cut(s) | 791 |
| BmiI | GGNNCC | 5 cut(s) | 235, 440, 487, 640, 793 |
| BmrFI | CCNGG | 4 cut(s) | 121, 201, 929, 1049 |
| BmsI | GCATC | 2 cut(s) | 73, 1012 |
| BpiI | GAAGAC | 2 cut(s) | 269, 1191 |
| BpmI | CTGGAG | 1 cut(s) | 440 |
| BpuEI | CTTGAG | 2 cut(s) | 992, 1059 |
| BpuMI | CCSGG | 1 cut(s) | 929 |
| BsaBI | GATNNNNATC | 1 cut(s) | 616 |
| BsaHI | GRCGYC | 4 cut(s) | 103, 234, 407, 486 |
| BsaI | GGTCTC | 3 cut(s) | 349, 971, 1210 |
| BsaJI | CCNNGG | 4 cut(s) | 109, 119, 120, 199 |
| BsaWI | WCCGGW | 4 cut(s) | 131, 527, 641, 890 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 138, 206, 500, 927, 997 |
| Bse1I | ACTGG | 2 cut(s) | 88, 1298 |
| Bse21I | CCTNAGG | 1 cut(s) | 238 |
| Bse8I | GATNNNNATC | 1 cut(s) | 616 |
| BseBI | CCWGG | 3 cut(s) | 121, 201, 1049 |
| BseDI | CCNNGG | 4 cut(s) | 109, 119, 120, 199 |
| BseGI | GGATG | 4 cut(s) | 406, 582, 887, 1156 |
| BseJI | GATNNNNATC | 1 cut(s) | 616 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 138, 206, 500, 927, 997 |
| BseMII | CTCAG | 2 cut(s) | 162, 252 |
| BseNI | ACTGG | 2 cut(s) | 88, 1298 |
| BsePI | GCGCGC | 1 cut(s) | 125 |
| Bsh1236I | CGCG | 2 cut(s) | 127, 268 |
| Bsh1285I | CGRYCG | 1 cut(s) | 196 |
| BshFI | GGCC | 2 cut(s) | 504, 666 |
| BshNI | GGYRCC | 2 cut(s) | 233, 485 |
| BsiEI | CGRYCG | 1 cut(s) | 196 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1037 |
| BsiSI | CCGG | 5 cut(s) | 132, 528, 642, 891, 928 |
| BslFI | GGGAC | 1 cut(s) | 944 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 138, 206, 500, 927, 997 |
| BsmAI | GTCTC | 5 cut(s) | 349, 901, 971, 1210, 1414 |
| BsmBI | CGTCTC | 1 cut(s) | 1414 |
| BsmFI | GGGAC | 1 cut(s) | 944 |
| BsnI | GGCC | 2 cut(s) | 504, 666 |
| Bso31I | GGTCTC | 3 cut(s) | 349, 971, 1210 |
| BsoBI | CYCGRG | 1 cut(s) | 1037 |
| Bsp1286I | GDGCHC | 2 cut(s) | 120, 721 |
| Bsp143I | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| BspACI | CCGC | 8 cut(s) | 192, 231, 243, 483, 546, 789, 1013, 1279 |
| BspANI | GGCC | 2 cut(s) | 504, 666 |
| BspCNI | CTCAG | 2 cut(s) | 163, 251 |
| BspFNI | CGCG | 2 cut(s) | 127, 268 |
| BspLI | GGNNCC | 5 cut(s) | 235, 440, 487, 640, 793 |
| BspMI | ACCTGC | 1 cut(s) | 322 |
| BspPI | GGATC | 2 cut(s) | 171, 763 |
| BspQI | GCTCTTC | 1 cut(s) | 709 |
| BspT107I | GGYRCC | 2 cut(s) | 233, 485 |
| BspTNI | GGTCTC | 3 cut(s) | 349, 971, 1210 |
| BsrI | ACTGG | 2 cut(s) | 88, 1298 |
| BssECI | CCNNGG | 4 cut(s) | 109, 119, 120, 199 |
| BssHII | GCGCGC | 1 cut(s) | 125 |
| BssMI | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| BssNI | GRCGYC | 4 cut(s) | 103, 234, 407, 486 |
| Bst2UI | CCWGG | 3 cut(s) | 121, 201, 1049 |
| Bst4CI | ACNGT | 4 cut(s) | 829, 853, 997, 1063 |
| Bst6I | CTCTTC | 3 cut(s) | 369, 709, 950 |
| BstACI | GRCGYC | 4 cut(s) | 103, 234, 407, 486 |
| BstC8I | GCNNGC | 4 cut(s) | 48, 116, 127, 1071 |
| BstDEI | CTNAG | 5 cut(s) | 171, 238, 731, 1102, 1428 |
| BstF5I | GGATG | 4 cut(s) | 406, 582, 887, 1156 |
| BstFNI | CGCG | 2 cut(s) | 127, 268 |
| BstH2I | RGCGCY | 2 cut(s) | 237, 489 |
| BstHHI | GCGC | 4 cut(s) | 127, 129, 236, 488 |
| BstKTI | GATC | 4 cut(s) | 166, 614, 771, 1365 |
| BstMAI | GTCTC | 5 cut(s) | 349, 901, 971, 1210, 1414 |
| BstMBI | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| BstMCI | CGRYCG | 1 cut(s) | 196 |
| BstNI | CCWGG | 3 cut(s) | 121, 201, 1049 |
| BstNSI | RCATGY | 1 cut(s) | 566 |
| BstSCI | CCNGG | 4 cut(s) | 119, 199, 927, 1047 |
| BstUI | CGCG | 2 cut(s) | 127, 268 |
| BstV2I | GAAGAC | 2 cut(s) | 269, 1191 |
| BstX2I | RGATCY | 1 cut(s) | 611 |
| BstYI | RGATCY | 1 cut(s) | 611 |
| Bsu36I | CCTNAGG | 1 cut(s) | 238 |
| BsuI | GTATCC | 1 cut(s) | 1021 |
| BsuRI | GGCC | 2 cut(s) | 504, 666 |
| BtgZI | GCGATG | 2 cut(s) | 219, 1388 |
| BtrI | CACGTC | 3 cut(s) | 781, 865, 1054 |
| BtsCI | GGATG | 4 cut(s) | 406, 582, 887, 1156 |
| BtsI | GCAGTG | 2 cut(s) | 253, 898 |
| BtsIMutI | CAGTG | 3 cut(s) | 95, 253, 898 |
| BveI | ACCTGC | 1 cut(s) | 322 |
| Cac8I | GCNNGC | 4 cut(s) | 48, 116, 127, 1071 |
| CaiI | CAGNNNCTG | 1 cut(s) | 766 |
| CfoI | GCGC | 4 cut(s) | 127, 129, 236, 488 |
| Cfr13I | GGNCC | 1 cut(s) | 791 |
| CseI | GACGC | 4 cut(s) | 92, 201, 274, 396 |
| Csp6I | GTAC | 3 cut(s) | 40, 58, 424 |
| CviAII | CATG | 2 cut(s) | 563, 917 |
| CviQI | GTAC | 3 cut(s) | 40, 58, 424 |
| DdeI | CTNAG | 5 cut(s) | 171, 238, 731, 1102, 1428 |
| DinI | GGCGCC | 2 cut(s) | 235, 487 |
| DpnI | GATC | 4 cut(s) | 165, 613, 770, 1364 |
| DpnII | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| DraI | TTTAAA | 1 cut(s) | 1293 |
| Eam1104I | CTCTTC | 3 cut(s) | 369, 709, 950 |
| EarI | CTCTTC | 3 cut(s) | 369, 709, 950 |
| Eco24I | GRGCYC | 2 cut(s) | 120, 721 |
| Eco31I | GGTCTC | 3 cut(s) | 349, 971, 1210 |
| Eco47I | GGWCC | 1 cut(s) | 791 |
| Eco81I | CCTNAGG | 1 cut(s) | 238 |
| Eco88I | CYCGRG | 1 cut(s) | 1037 |
| EcoRI | GAATTC | 1 cut(s) | 1020 |
| EcoRII | CCWGG | 3 cut(s) | 119, 199, 1047 |
| EcoT38I | GRGCYC | 2 cut(s) | 120, 721 |
| EgeI | GGCGCC | 2 cut(s) | 235, 487 |
| EheI | GGCGCC | 2 cut(s) | 235, 487 |
| Esp3I | CGTCTC | 1 cut(s) | 1414 |
| FaeI | CATG | 2 cut(s) | 566, 920 |
| FaqI | GGGAC | 1 cut(s) | 944 |
| FatI | CATG | 2 cut(s) | 562, 916 |
| FauI | CCCGC | 1 cut(s) | 553 |
| FauNDI | CATATG | 1 cut(s) | 1146 |
| FokI | GGATG | 4 cut(s) | 413, 569, 874, 1163 |
| FriOI | GRGCYC | 2 cut(s) | 120, 721 |
| FspBI | CTAG | 3 cut(s) | 357, 1044, 1256 |
| GlaI | GCGC | 4 cut(s) | 126, 128, 235, 487 |
| GsuI | CTGGAG | 1 cut(s) | 440 |
| HaeII | RGCGCY | 2 cut(s) | 237, 489 |
| HaeIII | GGCC | 2 cut(s) | 504, 666 |
| HapII | CCGG | 5 cut(s) | 132, 528, 642, 891, 928 |
| HgaI | GACGC | 4 cut(s) | 92, 201, 274, 396 |
| HhaI | GCGC | 4 cut(s) | 127, 129, 236, 488 |
| Hin1I | GRCGYC | 4 cut(s) | 103, 234, 407, 486 |
| Hin1II | CATG | 2 cut(s) | 566, 920 |
| Hin6I | GCGC | 4 cut(s) | 125, 127, 234, 486 |
| HinP1I | GCGC | 4 cut(s) | 125, 127, 234, 486 |
| HincII | GTYRAC | 2 cut(s) | 844, 896 |
| HindII | GTYRAC | 2 cut(s) | 844, 896 |
| HindIII | AAGCTT | 1 cut(s) | 1077 |
| HinfI | GANTC | 8 cut(s) | 155, 415, 470, 632, 1033, 1138, 1154, 1238 |
| HpaII | CCGG | 5 cut(s) | 132, 528, 642, 891, 928 |
| HphI | GGTGA | 1 cut(s) | 560 |
| Hpy166II | GTNNAC | 3 cut(s) | 568, 844, 896 |
| Hpy188I | TCNGA | 5 cut(s) | 76, 322, 628, 679, 1318 |
| Hpy188III | TCNNGA | 7 cut(s) | 419, 474, 578, 636, 1025, 1037, 1304 |
| Hpy8I | GTNNAC | 3 cut(s) | 568, 844, 896 |
| Hpy99I | CGWCG | 5 cut(s) | 108, 217, 310, 313, 412 |
| HpyAV | CCTTC | 6 cut(s) | 356, 360, 683, 704, 1188, 1411 |
| HpyCH4III | ACNGT | 4 cut(s) | 829, 853, 997, 1063 |
| HpyCH4IV | ACGT | 6 cut(s) | 780, 816, 840, 864, 1053, 1230 |
| HpyCH4V | TGCA | 4 cut(s) | 64, 225, 937, 1415 |
| HpyF3I | CTNAG | 5 cut(s) | 171, 238, 731, 1102, 1428 |
| HpySE526I | ACGT | 6 cut(s) | 780, 816, 840, 864, 1053, 1230 |
| Hsp92I | GRCGYC | 4 cut(s) | 103, 234, 407, 486 |
| Hsp92II | CATG | 2 cut(s) | 566, 920 |
| HspAI | GCGC | 4 cut(s) | 125, 127, 234, 486 |
| KasI | GGCGCC | 2 cut(s) | 233, 485 |
| Kzo9I | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| LguI | GCTCTTC | 1 cut(s) | 709 |
| LmnI | GCTCC | 3 cut(s) | 134, 209, 1164 |
| LweI | GCATC | 2 cut(s) | 73, 1012 |
| MaeI | CTAG | 3 cut(s) | 357, 1044, 1256 |
| MaeII | ACGT | 6 cut(s) | 780, 816, 840, 864, 1053, 1230 |
| MaeIII | GTNAC | 2 cut(s) | 334, 1235 |
| MalI | GATC | 4 cut(s) | 165, 613, 770, 1364 |
| MboI | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| MfeI | CAATTG | 1 cut(s) | 9 |
| MflI | RGATCY | 1 cut(s) | 611 |
| MhlI | GDGCHC | 2 cut(s) | 120, 721 |
| MluCI | AATT | 7 cut(s) | 9, 587, 598, 680, 983, 1020, 1346 |
| Mly113I | GGCGCC | 2 cut(s) | 234, 486 |
| MlyI | GAGTC | 4 cut(s) | 149, 479, 1132, 1232 |
| MmeI | TCCRAC | 1 cut(s) | 345 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1323 |
| MseI | TTAA | 4 cut(s) | 986, 1292, 1332, 1340 |
| MslI | CAYNNNNRTG | 2 cut(s) | 915, 1149 |
| MspA1I | CMGCKG | 2 cut(s) | 766, 789 |
| MspI | CCGG | 5 cut(s) | 132, 528, 642, 891, 928 |
| MspR9I | CCNGG | 4 cut(s) | 121, 201, 929, 1049 |
| MunI | CAATTG | 1 cut(s) | 9 |
| MvaI | CCWGG | 3 cut(s) | 121, 201, 1049 |
| MvnI | CGCG | 2 cut(s) | 127, 268 |
| NarI | GGCGCC | 2 cut(s) | 234, 486 |
| NciI | CCSGG | 1 cut(s) | 929 |
| NdeI | CATATG | 1 cut(s) | 1146 |
| NdeII | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| NlaIII | CATG | 2 cut(s) | 566, 920 |
| NlaIV | GGNNCC | 5 cut(s) | 235, 440, 487, 640, 793 |
| NmeAIII | GCCGAG | 1 cut(s) | 134 |
| NmuCI | GTSAC | 2 cut(s) | 334, 1235 |
| NspI | RCATGY | 1 cut(s) | 566 |
| PaeR7I | CTCGAG | 1 cut(s) | 1037 |
| PasI | CCCWGGG | 1 cut(s) | 120 |
| PauI | GCGCGC | 1 cut(s) | 125 |
| PciI | ACATGT | 1 cut(s) | 562 |
| PciSI | GCTCTTC | 1 cut(s) | 709 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 311, 404 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1323 |
| PfeI | GAWTC | 4 cut(s) | 415, 632, 1033, 1154 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PfoI | TCCNGGA | 1 cut(s) | 927 |
| PleI | GAGTC | 4 cut(s) | 149, 478, 1132, 1232 |
| PluTI | GGCGCC | 2 cut(s) | 237, 489 |
| PpsI | GAGTC | 4 cut(s) | 149, 478, 1132, 1232 |
| PscI | ACATGT | 1 cut(s) | 562 |
| Psp6I | CCWGG | 3 cut(s) | 119, 199, 1047 |
| PspGI | CCWGG | 3 cut(s) | 119, 199, 1047 |
| PspN4I | GGNNCC | 5 cut(s) | 235, 440, 487, 640, 793 |
| PspPI | GGNCC | 1 cut(s) | 791 |
| PstNI | CAGNNNCTG | 1 cut(s) | 766 |
| PsuI | RGATCY | 1 cut(s) | 611 |
| PteI | GCGCGC | 1 cut(s) | 125 |
| PvuII | CAGCTG | 1 cut(s) | 766 |
| RsaI | GTAC | 3 cut(s) | 41, 59, 425 |
| RsaNI | GTAC | 3 cut(s) | 40, 58, 424 |
| RseI | CAYNNNNRTG | 2 cut(s) | 915, 1149 |
| SapI | GCTCTTC | 1 cut(s) | 709 |
| SaqAI | TTAA | 4 cut(s) | 986, 1292, 1332, 1340 |
| Sau3AI | GATC | 4 cut(s) | 163, 611, 768, 1362 |
| Sau96I | GGNCC | 1 cut(s) | 791 |
| SchI | GAGTC | 4 cut(s) | 149, 479, 1132, 1232 |
| ScrFI | CCNGG | 4 cut(s) | 121, 201, 929, 1049 |
| SduI | GDGCHC | 2 cut(s) | 120, 721 |
| SfaNI | GCATC | 2 cut(s) | 73, 1012 |
| SfoI | GGCGCC | 2 cut(s) | 235, 487 |
| Sfr274I | CTCGAG | 1 cut(s) | 1037 |
| SinI | GGWCC | 1 cut(s) | 791 |
| SlaI | CTCGAG | 1 cut(s) | 1037 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 915, 1149 |
| SmlI | CTYRAG | 3 cut(s) | 1007, 1037, 1074 |
| SmoI | CTYRAG | 3 cut(s) | 1007, 1037, 1074 |
| Sse9I | AATT | 7 cut(s) | 9, 587, 598, 680, 983, 1020, 1346 |
| SsiI | CCGC | 8 cut(s) | 192, 231, 243, 483, 546, 789, 1013, 1279 |
| SspDI | GGCGCC | 2 cut(s) | 233, 485 |
| SspI | AATATT | 1 cut(s) | 556 |
| SspMI | CTAG | 3 cut(s) | 357, 1044, 1256 |
| StyD4I | CCNGG | 4 cut(s) | 119, 199, 927, 1047 |
| TaaI | ACNGT | 4 cut(s) | 829, 853, 997, 1063 |
| TaiI | ACGT | 6 cut(s) | 783, 819, 843, 867, 1056, 1233 |
| TaqI | TCGA | 2 cut(s) | 536, 1038 |
| TasI | AATT | 7 cut(s) | 9, 587, 598, 680, 983, 1020, 1346 |
| TatI | WGTACW | 1 cut(s) | 57 |
| TauI | GCSGC | 4 cut(s) | 234, 246, 486, 1016 |
| TfiI | GAWTC | 4 cut(s) | 415, 632, 1033, 1154 |
| Tru1I | TTAA | 4 cut(s) | 986, 1292, 1332, 1340 |
| Tru9I | TTAA | 4 cut(s) | 986, 1292, 1332, 1340 |
| TscAI | CASTG | 3 cut(s) | 95, 253, 905 |
| TseFI | GTSAC | 2 cut(s) | 334, 1235 |
| Tsp45I | GTSAC | 2 cut(s) | 334, 1235 |
| TspDTI | ATGAA | 4 cut(s) | 905, 955, 1190, 1194 |
| TspGWI | ACGGA | 2 cut(s) | 413, 1223 |
| TspRI | CASTG | 3 cut(s) | 95, 253, 905 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 791 |
| XapI | RAATTY | 3 cut(s) | 598, 1020, 1346 |
| XceI | RCATGY | 1 cut(s) | 566 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1197 |
| XhoI | CTCGAG | 1 cut(s) | 1037 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1323 |
| XspI | CTAG | 3 cut(s) | 357, 1044, 1256 |