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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 37, 221 |
| AccII | CGCG | 5 cut(s) | 26, 137, 192, 267, 387 |
| AccIII | TCCGGA | 1 cut(s) | 129 |
| AciI | CCGC | 8 cut(s) | 8, 187, 190, 262, 265, 309, 333, 396 |
| AclWI | GGATC | 1 cut(s) | 140 |
| AcoI | YGGCCR | 1 cut(s) | 306 |
| AcyI | GRCGYC | 3 cut(s) | 38, 222, 248 |
| AfaI | GTAC | 2 cut(s) | 65, 302 |
| AflIII | ACRYGT | 2 cut(s) | 24, 385 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 28, 247, 283 |
| AjnI | CCWGG | 2 cut(s) | 101, 224 |
| AluBI | AGCT | 1 cut(s) | 349 |
| AluI | AGCT | 1 cut(s) | 349 |
| Alw26I | GTCTC | 1 cut(s) | 210 |
| AlwI | GGATC | 1 cut(s) | 140 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 73 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| Aor13HI | TCCGGA | 1 cut(s) | 129 |
| AoxI | GGCC | 3 cut(s) | 80, 99, 306 |
| ApeKI | GCWGC | 1 cut(s) | 10 |
| AspLEI | GCGC | 4 cut(s) | 40, 56, 139, 224 |
| AspS9I | GGNCC | 2 cut(s) | 80, 163 |
| AsuHPI | GGTGA | 4 cut(s) | 307, 319, 384, 442 |
| AsuII | TTCGAA | 1 cut(s) | 108 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| AvaII | GGWCC | 1 cut(s) | 163 |
| BanI | GGYRCC | 2 cut(s) | 37, 221 |
| BbvI | GCAGC | 1 cut(s) | 22 |
| BceAI | ACGGC | 3 cut(s) | 67, 124, 235 |
| BciT130I | CCWGG | 2 cut(s) | 103, 226 |
| BcoDI | GTCTC | 1 cut(s) | 210 |
| BfoI | RGCGCY | 3 cut(s) | 41, 57, 225 |
| BisI | GCNGC | 4 cut(s) | 11, 190, 265, 309 |
| BlsI | GCNGC | 4 cut(s) | 12, 191, 266, 310 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 226 |
| Bme18I | GGWCC | 1 cut(s) | 163 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 28, 247, 283 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 2 cut(s) | 80, 163 |
| BmiI | GGNNCC | 3 cut(s) | 6, 39, 223 |
| BmrFI | CCNGG | 2 cut(s) | 103, 226 |
| BmsI | GCATC | 1 cut(s) | 60 |
| BoxI | GACNNNNGTC | 1 cut(s) | 388 |
| Bpu14I | TTCGAA | 1 cut(s) | 108 |
| BsaAI | YACGTR | 1 cut(s) | 304 |
| BsaHI | GRCGYC | 3 cut(s) | 38, 222, 248 |
| BsaJI | CCNNGG | 1 cut(s) | 33 |
| BsaWI | WCCGGW | 1 cut(s) | 129 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 284, 314 |
| Bse118I | RCCGGY | 2 cut(s) | 270, 329 |
| BseAI | TCCGGA | 1 cut(s) | 129 |
| BseBI | CCWGG | 2 cut(s) | 103, 226 |
| BseDI | CCNNGG | 1 cut(s) | 33 |
| BseXI | GCAGC | 1 cut(s) | 22 |
| Bsh1236I | CGCG | 5 cut(s) | 26, 137, 192, 267, 387 |
| Bsh1285I | CGRYCG | 1 cut(s) | 271 |
| BshFI | GGCC | 3 cut(s) | 82, 101, 308 |
| BshNI | GGYRCC | 2 cut(s) | 37, 221 |
| BsiEI | CGRYCG | 1 cut(s) | 271 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BsiSI | CCGG | 4 cut(s) | 130, 161, 271, 330 |
| BsiWI | CGTACG | 1 cut(s) | 300 |
| BslFI | GGGAC | 1 cut(s) | 235 |
| BsmAI | GTCTC | 1 cut(s) | 210 |
| BsmFI | GGGAC | 1 cut(s) | 235 |
| BsnI | GGCC | 3 cut(s) | 82, 101, 308 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp119I | TTCGAA | 1 cut(s) | 108 |
| Bsp13I | TCCGGA | 1 cut(s) | 129 |
| Bsp143I | GATC | 2 cut(s) | 132, 213 |
| Bsp19I | CCATGG | 1 cut(s) | 33 |
| BspACI | CCGC | 8 cut(s) | 8, 187, 190, 262, 265, 309, 333, 396 |
| BspANI | GGCC | 3 cut(s) | 82, 101, 308 |
| BspEI | TCCGGA | 1 cut(s) | 129 |
| BspFNI | CGCG | 5 cut(s) | 26, 137, 192, 267, 387 |
| BspLI | GGNNCC | 3 cut(s) | 6, 39, 223 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BspQI | GCTCTTC | 1 cut(s) | 44 |
| BspT104I | TTCGAA | 1 cut(s) | 108 |
| BspT107I | GGYRCC | 2 cut(s) | 37, 221 |
| BsrFI | RCCGGY | 2 cut(s) | 270, 329 |
| BssAI | RCCGGY | 2 cut(s) | 270, 329 |
| BssECI | CCNNGG | 1 cut(s) | 33 |
| BssMI | GATC | 2 cut(s) | 132, 213 |
| BssNI | GRCGYC | 3 cut(s) | 38, 222, 248 |
| BssT1I | CCWWGG | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 2 cut(s) | 103, 226 |
| Bst4CI | ACNGT | 1 cut(s) | 454 |
| Bst6I | CTCTTC | 1 cut(s) | 44 |
| BstACI | GRCGYC | 3 cut(s) | 38, 222, 248 |
| BstBAI | YACGTR | 1 cut(s) | 304 |
| BstBI | TTCGAA | 1 cut(s) | 108 |
| BstC8I | GCNNGC | 1 cut(s) | 158 |
| BstDSI | CCRYGG | 1 cut(s) | 33 |
| BstEII | GGTNACC | 1 cut(s) | 325 |
| BstFNI | CGCG | 5 cut(s) | 26, 137, 192, 267, 387 |
| BstH2I | RGCGCY | 3 cut(s) | 41, 57, 225 |
| BstHHI | GCGC | 4 cut(s) | 40, 56, 139, 224 |
| BstKTI | GATC | 2 cut(s) | 135, 216 |
| BstMAI | GTCTC | 1 cut(s) | 210 |
| BstMBI | GATC | 2 cut(s) | 132, 213 |
| BstMCI | CGRYCG | 1 cut(s) | 271 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 186, 198 |
| BstNI | CCWGG | 2 cut(s) | 103, 226 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 388 |
| BstPI | GGTNACC | 1 cut(s) | 325 |
| BstSCI | CCNGG | 2 cut(s) | 101, 224 |
| BstUI | CGCG | 5 cut(s) | 26, 137, 192, 267, 387 |
| BstV1I | GCAGC | 1 cut(s) | 22 |
| BsuRI | GGCC | 3 cut(s) | 82, 101, 308 |
| BtgI | CCRYGG | 1 cut(s) | 33 |
| Cac8I | GCNNGC | 1 cut(s) | 158 |
| CaiI | CAGNNNCTG | 1 cut(s) | 73 |
| CfoI | GCGC | 4 cut(s) | 40, 56, 139, 224 |
| Cfr10I | RCCGGY | 2 cut(s) | 270, 329 |
| Cfr13I | GGNCC | 2 cut(s) | 80, 163 |
| CseI | GACGC | 6 cut(s) | 15, 32, 100, 133, 237, 393 |
| Csp6I | GTAC | 2 cut(s) | 64, 301 |
| CviAII | CATG | 3 cut(s) | 14, 34, 473 |
| CviJI | RGCY | 5 cut(s) | 82, 101, 274, 308, 349 |
| CviKI_1 | RGCY | 5 cut(s) | 82, 101, 274, 308, 349 |
| CviQI | GTAC | 2 cut(s) | 64, 301 |
| DinI | GGCGCC | 2 cut(s) | 39, 223 |
| DpnI | GATC | 2 cut(s) | 134, 215 |
| DpnII | GATC | 2 cut(s) | 132, 213 |
| DriI | GACNNNNNGTC | 3 cut(s) | 28, 247, 283 |
| EaeI | YGGCCR | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 1 cut(s) | 44 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 28, 247, 283 |
| EarI | CTCTTC | 1 cut(s) | 44 |
| EciI | GGCGGA | 2 cut(s) | 176, 251 |
| Eco130I | CCWWGG | 1 cut(s) | 33 |
| Eco47I | GGWCC | 1 cut(s) | 163 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| Eco91I | GGTNACC | 1 cut(s) | 325 |
| EcoO65I | GGTNACC | 1 cut(s) | 325 |
| EcoRII | CCWGG | 2 cut(s) | 101, 224 |
| EcoT14I | CCWWGG | 1 cut(s) | 33 |
| EgeI | GGCGCC | 2 cut(s) | 39, 223 |
| EheI | GGCGCC | 2 cut(s) | 39, 223 |
| ErhI | CCWWGG | 1 cut(s) | 33 |
| FaeI | CATG | 3 cut(s) | 17, 37, 476 |
| FaiI | YATR | 3 cut(s) | 15, 35, 474 |
| FaqI | GGGAC | 1 cut(s) | 235 |
| FatI | CATG | 3 cut(s) | 13, 33, 472 |
| FauI | CCCGC | 2 cut(s) | 326, 403 |
| Fnu4HI | GCNGC | 4 cut(s) | 11, 190, 265, 309 |
| Fsp4HI | GCNGC | 4 cut(s) | 11, 190, 265, 309 |
| GlaI | GCGC | 4 cut(s) | 39, 55, 138, 223 |
| GluI | GCNGC | 4 cut(s) | 11, 190, 265, 309 |
| HaeII | RGCGCY | 3 cut(s) | 41, 57, 225 |
| HaeIII | GGCC | 3 cut(s) | 82, 101, 308 |
| HapII | CCGG | 4 cut(s) | 130, 161, 271, 330 |
| HgaI | GACGC | 6 cut(s) | 15, 32, 100, 133, 237, 393 |
| HhaI | GCGC | 4 cut(s) | 40, 56, 139, 224 |
| Hin1I | GRCGYC | 3 cut(s) | 38, 222, 248 |
| Hin1II | CATG | 3 cut(s) | 17, 37, 476 |
| Hin6I | GCGC | 4 cut(s) | 38, 54, 137, 222 |
| HinP1I | GCGC | 4 cut(s) | 38, 54, 137, 222 |
| HincII | GTYRAC | 1 cut(s) | 403 |
| HindII | GTYRAC | 1 cut(s) | 403 |
| HinfI | GANTC | 3 cut(s) | 229, 242, 284 |
| HpaII | CCGG | 4 cut(s) | 130, 161, 271, 330 |
| HphI | GGTGA | 4 cut(s) | 307, 319, 384, 442 |
| Hpy166II | GTNNAC | 2 cut(s) | 362, 403 |
| Hpy188I | TCNGA | 3 cut(s) | 234, 241, 292 |
| Hpy188III | TCNNGA | 3 cut(s) | 130, 209, 211 |
| Hpy8I | GTNNAC | 2 cut(s) | 362, 403 |
| Hpy99I | CGWCG | 6 cut(s) | 31, 88, 292, 387, 413, 424 |
| HpyCH4III | ACNGT | 1 cut(s) | 454 |
| HpyCH4IV | ACGT | 3 cut(s) | 126, 299, 303 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 186, 198 |
| HpySE526I | ACGT | 3 cut(s) | 126, 299, 303 |
| Hsp92I | GRCGYC | 3 cut(s) | 38, 222, 248 |
| Hsp92II | CATG | 3 cut(s) | 17, 37, 476 |
| HspAI | GCGC | 4 cut(s) | 38, 54, 137, 222 |
| KasI | GGCGCC | 2 cut(s) | 37, 221 |
| Kpn2I | TCCGGA | 1 cut(s) | 129 |
| Kzo9I | GATC | 2 cut(s) | 132, 213 |
| LguI | GCTCTTC | 1 cut(s) | 44 |
| LmnI | GCTCC | 1 cut(s) | 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 22 |
| LweI | GCATC | 1 cut(s) | 60 |
| MaeII | ACGT | 3 cut(s) | 126, 299, 303 |
| MaeIII | GTNAC | 3 cut(s) | 295, 325, 390 |
| MalI | GATC | 2 cut(s) | 134, 215 |
| MboI | GATC | 2 cut(s) | 132, 213 |
| MboII | GAAGA | 1 cut(s) | 61 |
| MluCI | AATT | 1 cut(s) | 58 |
| MluI | ACGCGT | 2 cut(s) | 24, 385 |
| Mly113I | GGCGCC | 2 cut(s) | 38, 222 |
| MlyI | GAGTC | 2 cut(s) | 236, 293 |
| MmeI | TCCRAC | 3 cut(s) | 264, 270, 462 |
| MnlI | CCTC | 6 cut(s) | 179, 194, 263, 286, 315, 458 |
| MroI | TCCGGA | 1 cut(s) | 129 |
| MseI | TTAA | 1 cut(s) | 369 |
| MslI | CAYNNNNRTG | 1 cut(s) | 200 |
| MspI | CCGG | 4 cut(s) | 130, 161, 271, 330 |
| MspR9I | CCNGG | 2 cut(s) | 103, 226 |
| MvaI | CCWGG | 2 cut(s) | 103, 226 |
| MvnI | CGCG | 5 cut(s) | 26, 137, 192, 267, 387 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 186, 198 |
| NarI | GGCGCC | 2 cut(s) | 38, 222 |
| NcoI | CCATGG | 1 cut(s) | 33 |
| NdeII | GATC | 2 cut(s) | 132, 213 |
| NlaIII | CATG | 3 cut(s) | 17, 37, 476 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 39, 223 |
| NmeAIII | GCCGAG | 2 cut(s) | 77, 224 |
| NmuCI | GTSAC | 3 cut(s) | 295, 325, 390 |
| NspV | TTCGAA | 1 cut(s) | 108 |
| PaeR7I | CTCGAG | 1 cut(s) | 209 |
| PciSI | GCTCTTC | 1 cut(s) | 44 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 296, 309 |
| PfeI | GAWTC | 1 cut(s) | 229 |
| Pfl23II | CGTACG | 1 cut(s) | 300 |
| PflFI | GACNNNGTC | 1 cut(s) | 407 |
| PkrI | GCNGC | 4 cut(s) | 12, 191, 266, 310 |
| PleI | GAGTC | 2 cut(s) | 236, 292 |
| PluTI | GGCGCC | 2 cut(s) | 41, 225 |
| PpsI | GAGTC | 2 cut(s) | 236, 292 |
| Ppu21I | YACGTR | 1 cut(s) | 304 |
| PshAI | GACNNNNGTC | 1 cut(s) | 388 |
| Psp6I | CCWGG | 2 cut(s) | 101, 224 |
| PspEI | GGTNACC | 1 cut(s) | 325 |
| PspGI | CCWGG | 2 cut(s) | 101, 224 |
| PspLI | CGTACG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 39, 223 |
| PspPI | GGNCC | 2 cut(s) | 80, 163 |
| PstNI | CAGNNNCTG | 1 cut(s) | 73 |
| PsyI | GACNNNGTC | 1 cut(s) | 407 |
| RsaI | GTAC | 2 cut(s) | 65, 302 |
| RsaNI | GTAC | 2 cut(s) | 64, 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 200 |
| SapI | GCTCTTC | 1 cut(s) | 44 |
| SaqAI | TTAA | 1 cut(s) | 369 |
| SatI | GCNGC | 4 cut(s) | 11, 190, 265, 309 |
| Sau3AI | GATC | 2 cut(s) | 132, 213 |
| Sau96I | GGNCC | 2 cut(s) | 80, 163 |
| SchI | GAGTC | 2 cut(s) | 236, 293 |
| ScrFI | CCNGG | 2 cut(s) | 103, 226 |
| SetI | ASST | 7 cut(s) | 129, 171, 186, 297, 302, 306, 351 |
| SfaNI | GCATC | 1 cut(s) | 60 |
| SfoI | GGCGCC | 2 cut(s) | 39, 223 |
| Sfr274I | CTCGAG | 1 cut(s) | 209 |
| SfuI | TTCGAA | 1 cut(s) | 108 |
| SgrAI | CRCCGGYG | 1 cut(s) | 329 |
| SinI | GGWCC | 1 cut(s) | 163 |
| SlaI | CTCGAG | 1 cut(s) | 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 200 |
| SmlI | CTYRAG | 1 cut(s) | 209 |
| SmoI | CTYRAG | 1 cut(s) | 209 |
| Sse9I | AATT | 1 cut(s) | 58 |
| SsiI | CCGC | 8 cut(s) | 8, 187, 190, 262, 265, 309, 333, 396 |
| SspDI | GGCGCC | 2 cut(s) | 37, 221 |
| StyD4I | CCNGG | 2 cut(s) | 101, 224 |
| StyI | CCWWGG | 1 cut(s) | 33 |
| TaaI | ACNGT | 1 cut(s) | 454 |
| TaiI | ACGT | 3 cut(s) | 129, 302, 306 |
| TaqI | TCGA | 3 cut(s) | 108, 150, 210 |
| TasI | AATT | 1 cut(s) | 58 |
| TauI | GCSGC | 3 cut(s) | 192, 267, 311 |
| TfiI | GAWTC | 1 cut(s) | 229 |
| Tru1I | TTAA | 1 cut(s) | 369 |
| Tru9I | TTAA | 1 cut(s) | 369 |
| TseFI | GTSAC | 3 cut(s) | 295, 325, 390 |
| TseI | GCWGC | 1 cut(s) | 10 |
| Tsp45I | GTSAC | 3 cut(s) | 295, 325, 390 |
| Tth111I | GACNNNGTC | 1 cut(s) | 407 |
| VpaK11BI | GGWCC | 1 cut(s) | 163 |
| XhoI | CTCGAG | 1 cut(s) | 209 |