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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 244 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1169 |
| Acc36I | ACCTGC | 1 cut(s) | 244 |
| AccB1I | GGYRCC | 1 cut(s) | 1124 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1305, 1454 |
| AccII | CGCG | 3 cut(s) | 208, 680, 1109 |
| AccIII | TCCGGA | 1 cut(s) | 1089 |
| AciI | CCGC | 3 cut(s) | 262, 600, 802 |
| AclI | AACGTT | 1 cut(s) | 753 |
| AclWI | GGATC | 5 cut(s) | 116, 538, 550, 551, 1439 |
| AcoI | YGGCCR | 2 cut(s) | 303, 1203 |
| AcsI | RAATTY | 1 cut(s) | 1430 |
| AcuI | CTGAAG | 1 cut(s) | 1070 |
| AcyI | GRCGYC | 1 cut(s) | 1125 |
| AfaI | GTAC | 3 cut(s) | 695, 825, 1349 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 301, 312, 327, 505, 703, 1120, 1305, 1454 |
| AflII | CTTAAG | 1 cut(s) | 530 |
| AflIII | ACRYGT | 1 cut(s) | 94 |
| AgeI | ACCGGT | 1 cut(s) | 52 |
| AgsI | TTSAA | 6 cut(s) | 339, 375, 608, 817, 1427, 1435 |
| AjnI | CCWGG | 2 cut(s) | 224, 1127 |
| AluBI | AGCT | 8 cut(s) | 285, 402, 465, 596, 620, 641, 1003, 1025 |
| AluI | AGCT | 8 cut(s) | 285, 402, 465, 596, 620, 641, 1003, 1025 |
| Alw21I | GWGCWC | 3 cut(s) | 190, 246, 522 |
| Alw26I | GTCTC | 6 cut(s) | 85, 159, 410, 473, 937, 1445 |
| Alw44I | GTGCAC | 1 cut(s) | 186 |
| AlwI | GGATC | 5 cut(s) | 116, 538, 550, 551, 1439 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 277, 1454 |
| Ama87I | CYCGRG | 1 cut(s) | 734 |
| Aor13HI | TCCGGA | 1 cut(s) | 1089 |
| AoxI | GGCC | 7 cut(s) | 74, 227, 303, 329, 630, 1203, 1438 |
| ApaLI | GTGCAC | 1 cut(s) | 186 |
| ApeKI | GCWGC | 3 cut(s) | 252, 255, 739 |
| ApoI | RAATTY | 1 cut(s) | 1430 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1078, 1110 |
| AsiGI | ACCGGT | 1 cut(s) | 52 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 846 |
| AspA2I | CCTAGG | 1 cut(s) | 1237 |
| AspLEI | GCGC | 7 cut(s) | 208, 210, 428, 491, 682, 1111, 1127 |
| AspS9I | GGNCC | 3 cut(s) | 228, 508, 1171 |
| AvaI | CYCGRG | 1 cut(s) | 734 |
| AvaII | GGWCC | 2 cut(s) | 508, 1171 |
| AvrII | CCTAGG | 1 cut(s) | 1237 |
| AxyI | CCTNAGG | 2 cut(s) | 1115, 1142 |
| BaeGI | GKGCMC | 1 cut(s) | 190 |
| BalI | TGGCCA | 1 cut(s) | 1205 |
| BamHI | GGATCC | 1 cut(s) | 543 |
| BanI | GGYRCC | 1 cut(s) | 1124 |
| BanII | GRGCYC | 2 cut(s) | 181, 203 |
| BbsI | GAAGAC | 2 cut(s) | 714, 917 |
| Bbv12I | GWGCWC | 3 cut(s) | 190, 246, 522 |
| BbvCI | CCTCAGC | 1 cut(s) | 270 |
| BbvI | GCAGC | 3 cut(s) | 264, 267, 751 |
| BccI | CCATC | 4 cut(s) | 340, 533, 783, 859 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 100, 134, 142, 163, 176, 185, 197, 219 |
| BciT130I | CCWGG | 2 cut(s) | 226, 1129 |
| BciVI | GTATCC | 2 cut(s) | 425, 488 |
| BcoDI | GTCTC | 6 cut(s) | 85, 159, 410, 473, 937, 1445 |
| BfaI | CTAG | 5 cut(s) | 282, 413, 476, 1065, 1238 |
| BfmI | CTRYAG | 1 cut(s) | 250 |
| BfoI | RGCGCY | 1 cut(s) | 1128 |
| BfrI | CTTAAG | 1 cut(s) | 530 |
| BfuAI | ACCTGC | 1 cut(s) | 244 |
| BfuI | GTATCC | 2 cut(s) | 425, 488 |
| BglII | AGATCT | 2 cut(s) | 113, 134 |
| BisI | GCNGC | 3 cut(s) | 253, 256, 740 |
| BlnI | CCTAGG | 1 cut(s) | 1237 |
| BlsI | GCNGC | 3 cut(s) | 254, 257, 741 |
| Bme1390I | CCNGG | 2 cut(s) | 226, 1129 |
| Bme18I | GGWCC | 2 cut(s) | 508, 1171 |
| BmeT110I | CYCGRG | 1 cut(s) | 734 |
| BmgT120I | GGNCC | 3 cut(s) | 228, 508, 1171 |
| BmiI | GGNNCC | 5 cut(s) | 509, 545, 1126, 1225, 1260 |
| BmrFI | CCNGG | 2 cut(s) | 226, 1129 |
| BmsI | GCATC | 5 cut(s) | 166, 535, 993, 1264, 1304 |
| BoxI | GACNNNNGTC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 2 cut(s) | 714, 917 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 391, 423, 454, 486 |
| BpmI | CTGGAG | 1 cut(s) | 506 |
| Bpu10I | CCTNAGC | 1 cut(s) | 270 |
| BsaBI | GATNNNNATC | 3 cut(s) | 902, 1278, 1407 |
| BsaHI | GRCGYC | 1 cut(s) | 1125 |
| BsaJI | CCNNGG | 3 cut(s) | 224, 1071, 1237 |
| BsaWI | WCCGGW | 3 cut(s) | 52, 349, 1089 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 301, 312, 327, 505, 703, 1120, 1305, 1454 |
| Bse118I | RCCGGY | 3 cut(s) | 52, 72, 301 |
| Bse1I | ACTGG | 2 cut(s) | 295, 1459 |
| Bse21I | CCTNAGG | 2 cut(s) | 1115, 1142 |
| Bse8I | GATNNNNATC | 3 cut(s) | 902, 1278, 1407 |
| BseAI | TCCGGA | 1 cut(s) | 1089 |
| BseBI | CCWGG | 2 cut(s) | 226, 1129 |
| BseDI | CCNNGG | 3 cut(s) | 224, 1071, 1237 |
| BseGI | GGATG | 2 cut(s) | 384, 1295 |
| BseJI | GATNNNNATC | 3 cut(s) | 902, 1278, 1407 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 301, 312, 327, 505, 703, 1120, 1305, 1454 |
| BseMII | CTCAG | 2 cut(s) | 284, 539 |
| BseNI | ACTGG | 2 cut(s) | 295, 1459 |
| BsePI | GCGCGC | 1 cut(s) | 206 |
| BseSI | GKGCMC | 1 cut(s) | 190 |
| BseXI | GCAGC | 3 cut(s) | 264, 267, 751 |
| Bsh1236I | CGCG | 3 cut(s) | 208, 680, 1109 |
| Bsh1285I | CGRYCG | 1 cut(s) | 57 |
| BshFI | GGCC | 7 cut(s) | 76, 229, 305, 331, 632, 1205, 1440 |
| BshNI | GGYRCC | 1 cut(s) | 1124 |
| BshTI | ACCGGT | 1 cut(s) | 52 |
| BsiEI | CGRYCG | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 3 cut(s) | 190, 246, 522 |
| BsiHKCI | CYCGRG | 1 cut(s) | 734 |
| BsiSI | CCGG | 6 cut(s) | 53, 73, 288, 302, 350, 1090 |
| BslFI | GGGAC | 1 cut(s) | 67 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 301, 312, 327, 505, 703, 1120, 1305, 1454 |
| BsmAI | GTCTC | 6 cut(s) | 85, 159, 410, 473, 937, 1445 |
| BsmBI | CGTCTC | 1 cut(s) | 937 |
| BsmFI | GGGAC | 1 cut(s) | 67 |
| BsnI | GGCC | 7 cut(s) | 76, 229, 305, 331, 632, 1205, 1440 |
| BsoBI | CYCGRG | 1 cut(s) | 734 |
| Bsp1286I | GDGCHC | 5 cut(s) | 181, 190, 203, 246, 522 |
| Bsp13I | TCCGGA | 1 cut(s) | 1089 |
| BspACI | CCGC | 3 cut(s) | 262, 600, 802 |
| BspANI | GGCC | 7 cut(s) | 76, 229, 305, 331, 632, 1205, 1440 |
| BspCNI | CTCAG | 2 cut(s) | 283, 540 |
| BspEI | TCCGGA | 1 cut(s) | 1089 |
| BspFNI | CGCG | 3 cut(s) | 208, 680, 1109 |
| BspHI | TCATGA | 1 cut(s) | 997 |
| BspLI | GGNNCC | 5 cut(s) | 509, 545, 1126, 1225, 1260 |
| BspMAI | CTGCAG | 1 cut(s) | 254 |
| BspMI | ACCTGC | 1 cut(s) | 244 |
| BspPI | GGATC | 5 cut(s) | 116, 538, 550, 551, 1439 |
| BspT107I | GGYRCC | 1 cut(s) | 1124 |
| BspTI | CTTAAG | 1 cut(s) | 530 |
| BsrFI | RCCGGY | 3 cut(s) | 52, 72, 301 |
| BsrI | ACTGG | 2 cut(s) | 295, 1459 |
| BssAI | RCCGGY | 3 cut(s) | 52, 72, 301 |
| BssECI | CCNNGG | 3 cut(s) | 224, 1071, 1237 |
| BssHII | GCGCGC | 1 cut(s) | 206 |
| BssNI | GRCGYC | 1 cut(s) | 1125 |
| BssT1I | CCWWGG | 1 cut(s) | 1237 |
| Bst2UI | CCWGG | 2 cut(s) | 226, 1129 |
| Bst4CI | ACNGT | 2 cut(s) | 279, 1228 |
| BstACI | GRCGYC | 1 cut(s) | 1125 |
| BstAFI | CTTAAG | 1 cut(s) | 530 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1322 |
| BstC8I | GCNNGC | 4 cut(s) | 186, 208, 266, 1217 |
| BstDEI | CTNAG | 5 cut(s) | 270, 548, 1115, 1142, 1418 |
| BstDSI | CCRYGG | 1 cut(s) | 1071 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 325, 701, 1118 |
| BstF5I | GGATG | 2 cut(s) | 384, 1295 |
| BstFNI | CGCG | 3 cut(s) | 208, 680, 1109 |
| BstH2I | RGCGCY | 1 cut(s) | 1128 |
| BstHHI | GCGC | 7 cut(s) | 208, 210, 428, 491, 682, 1111, 1127 |
| BstMAI | GTCTC | 6 cut(s) | 85, 159, 410, 473, 937, 1445 |
| BstMCI | CGRYCG | 1 cut(s) | 57 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 169, 185, 207, 261, 608, 617, 638, 1322, 1373 |
| BstNI | CCWGG | 2 cut(s) | 226, 1129 |
| BstNSI | RCATGY | 3 cut(s) | 98, 1219, 1320 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 97 |
| BstSCI | CCNGG | 2 cut(s) | 224, 1127 |
| BstSFI | CTRYAG | 1 cut(s) | 250 |
| BstSLI | GKGCMC | 1 cut(s) | 190 |
| BstUI | CGCG | 3 cut(s) | 208, 680, 1109 |
| BstV1I | GCAGC | 3 cut(s) | 264, 267, 751 |
| BstV2I | GAAGAC | 2 cut(s) | 714, 917 |
| BstX2I | RGATCY | 5 cut(s) | 113, 134, 543, 555, 1444 |
| BstYI | RGATCY | 5 cut(s) | 113, 134, 543, 555, 1444 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1115, 1142 |
| BsuI | GTATCC | 2 cut(s) | 425, 488 |
| BsuRI | GGCC | 7 cut(s) | 76, 229, 305, 331, 632, 1205, 1440 |
| BtgI | CCRYGG | 1 cut(s) | 1071 |
| BtsCI | GGATG | 2 cut(s) | 384, 1295 |
| BtsIMutI | CAGTG | 1 cut(s) | 888 |
| BveI | ACCTGC | 1 cut(s) | 244 |
| Cac8I | GCNNGC | 4 cut(s) | 186, 208, 266, 1217 |
| CaiI | CAGNNNCTG | 2 cut(s) | 277, 1454 |
| CciI | TCATGA | 1 cut(s) | 997 |
| CfoI | GCGC | 7 cut(s) | 208, 210, 428, 491, 682, 1111, 1127 |
| Cfr10I | RCCGGY | 3 cut(s) | 52, 72, 301 |
| Cfr13I | GGNCC | 3 cut(s) | 228, 508, 1171 |
| CseI | GACGC | 2 cut(s) | 686, 990 |
| Csp6I | GTAC | 3 cut(s) | 694, 824, 1348 |
| CspAI | ACCGGT | 1 cut(s) | 52 |
| CviAII | CATG | 8 cut(s) | 95, 670, 998, 1015, 1216, 1268, 1317, 1384 |
| CviQI | GTAC | 3 cut(s) | 694, 824, 1348 |
| DdeI | CTNAG | 5 cut(s) | 270, 548, 1115, 1142, 1418 |
| DinI | GGCGCC | 1 cut(s) | 1126 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1169 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1169 |
| EaeI | YGGCCR | 2 cut(s) | 303, 1203 |
| Eco130I | CCWWGG | 1 cut(s) | 1237 |
| Eco24I | GRGCYC | 2 cut(s) | 181, 203 |
| Eco47I | GGWCC | 2 cut(s) | 508, 1171 |
| Eco57I | CTGAAG | 1 cut(s) | 1070 |
| Eco81I | CCTNAGG | 2 cut(s) | 1115, 1142 |
| Eco88I | CYCGRG | 1 cut(s) | 734 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 325, 701, 1118 |
| EcoRI | GAATTC | 1 cut(s) | 1430 |
| EcoRII | CCWGG | 2 cut(s) | 224, 1127 |
| EcoT14I | CCWWGG | 1 cut(s) | 1237 |
| EcoT38I | GRGCYC | 2 cut(s) | 181, 203 |
| EgeI | GGCGCC | 1 cut(s) | 1126 |
| EheI | GGCGCC | 1 cut(s) | 1126 |
| ErhI | CCWWGG | 1 cut(s) | 1237 |
| Esp3I | CGTCTC | 1 cut(s) | 937 |
| FaeI | CATG | 8 cut(s) | 98, 673, 1001, 1018, 1219, 1271, 1320, 1387 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 386, 418, 449, 481 |
| FaqI | GGGAC | 1 cut(s) | 67 |
| FatI | CATG | 8 cut(s) | 94, 669, 997, 1014, 1215, 1267, 1316, 1383 |
| FauI | CCCGC | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 3 cut(s) | 253, 256, 740 |
| FokI | GGATG | 2 cut(s) | 391, 1282 |
| FriOI | GRGCYC | 2 cut(s) | 181, 203 |
| Fsp4HI | GCNGC | 3 cut(s) | 253, 256, 740 |
| FspBI | CTAG | 5 cut(s) | 282, 413, 476, 1065, 1238 |
| GlaI | GCGC | 7 cut(s) | 207, 209, 427, 490, 681, 1110, 1126 |
| GluI | GCNGC | 3 cut(s) | 253, 256, 740 |
| GsuI | CTGGAG | 1 cut(s) | 506 |
| HaeII | RGCGCY | 1 cut(s) | 1128 |
| HaeIII | GGCC | 7 cut(s) | 76, 229, 305, 331, 632, 1205, 1440 |
| HapII | CCGG | 6 cut(s) | 53, 73, 288, 302, 350, 1090 |
| HgaI | GACGC | 2 cut(s) | 686, 990 |
| HhaI | GCGC | 7 cut(s) | 208, 210, 428, 491, 682, 1111, 1127 |
| Hin1I | GRCGYC | 1 cut(s) | 1125 |
| Hin1II | CATG | 8 cut(s) | 98, 673, 1001, 1018, 1219, 1271, 1320, 1387 |
| Hin6I | GCGC | 7 cut(s) | 206, 208, 426, 489, 680, 1109, 1125 |
| HinP1I | GCGC | 7 cut(s) | 206, 208, 426, 489, 680, 1109, 1125 |
| HinfI | GANTC | 5 cut(s) | 35, 60, 761, 913, 1093 |
| HpaII | CCGG | 6 cut(s) | 53, 73, 288, 302, 350, 1090 |
| Hpy166II | GTNNAC | 1 cut(s) | 188 |
| Hpy188I | TCNGA | 7 cut(s) | 34, 59, 315, 573, 841, 963, 1050 |
| Hpy8I | GTNNAC | 1 cut(s) | 188 |
| HpyAV | CCTTC | 2 cut(s) | 116, 934 |
| HpyCH4III | ACNGT | 2 cut(s) | 279, 1228 |
| HpyCH4IV | ACGT | 4 cut(s) | 576, 753, 1164, 1355 |
| HpyCH4V | TGCA | 5 cut(s) | 188, 252, 938, 1219, 1325 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 169, 185, 207, 261, 608, 617, 638, 1322, 1373 |
| HpyF3I | CTNAG | 5 cut(s) | 270, 548, 1115, 1142, 1418 |
| HpySE526I | ACGT | 4 cut(s) | 576, 753, 1164, 1355 |
| Hsp92I | GRCGYC | 1 cut(s) | 1125 |
| Hsp92II | CATG | 8 cut(s) | 98, 673, 1001, 1018, 1219, 1271, 1320, 1387 |
| HspAI | GCGC | 7 cut(s) | 206, 208, 426, 489, 680, 1109, 1125 |
| KasI | GGCGCC | 1 cut(s) | 1124 |
| Kpn2I | TCCGGA | 1 cut(s) | 1089 |
| LmnI | GCTCC | 8 cut(s) | 290, 412, 475, 525, 687, 1258, 1292, 1387 |
| Lsp1109I | GCAGC | 3 cut(s) | 264, 267, 751 |
| LweI | GCATC | 5 cut(s) | 166, 535, 993, 1264, 1304 |
| MaeI | CTAG | 5 cut(s) | 282, 413, 476, 1065, 1238 |
| MaeII | ACGT | 4 cut(s) | 576, 753, 1164, 1355 |
| MaeIII | GTNAC | 4 cut(s) | 297, 383, 446, 758 |
| MboII | GAAGA | 7 cut(s) | 327, 719, 922, 1063, 1274, 1406, 1439 |
| MflI | RGATCY | 5 cut(s) | 113, 134, 543, 555, 1444 |
| MhlI | GDGCHC | 5 cut(s) | 181, 190, 203, 246, 522 |
| MlsI | TGGCCA | 1 cut(s) | 1205 |
| MluCI | AATT | 7 cut(s) | 27, 651, 835, 1098, 1152, 1378, 1430 |
| MluNI | TGGCCA | 1 cut(s) | 1205 |
| Mly113I | GGCGCC | 1 cut(s) | 1125 |
| MlyI | GAGTC | 3 cut(s) | 755, 907, 1102 |
| MmeI | TCCRAC | 2 cut(s) | 37, 958 |
| Mox20I | TGGCCA | 1 cut(s) | 1205 |
| MroI | TCCGGA | 1 cut(s) | 1089 |
| MroXI | GAANNNNTTC | 1 cut(s) | 846 |
| MscI | TGGCCA | 1 cut(s) | 1205 |
| MseI | TTAA | 2 cut(s) | 531, 1468 |
| MslI | CAYNNNNRTG | 2 cut(s) | 672, 1272 |
| Msp20I | TGGCCA | 1 cut(s) | 1205 |
| MspCI | CTTAAG | 1 cut(s) | 530 |
| MspI | CCGG | 6 cut(s) | 53, 73, 288, 302, 350, 1090 |
| MspR9I | CCNGG | 2 cut(s) | 226, 1129 |
| MvaI | CCWGG | 2 cut(s) | 226, 1129 |
| MvnI | CGCG | 3 cut(s) | 208, 680, 1109 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 169, 185, 207, 261, 608, 617, 638, 1322, 1373 |
| NarI | GGCGCC | 1 cut(s) | 1125 |
| NlaIII | CATG | 8 cut(s) | 98, 673, 1001, 1018, 1219, 1271, 1320, 1387 |
| NlaIV | GGNNCC | 5 cut(s) | 509, 545, 1126, 1225, 1260 |
| NmeAIII | GCCGAG | 4 cut(s) | 114, 156, 198, 265 |
| NmuCI | GTSAC | 1 cut(s) | 758 |
| NspI | RCATGY | 3 cut(s) | 98, 1219, 1320 |
| PaeI | GCATGC | 1 cut(s) | 1219 |
| PaeR7I | CTCGAG | 1 cut(s) | 734 |
| PagI | TCATGA | 1 cut(s) | 997 |
| PaqCI | CACCTGC | 1 cut(s) | 244 |
| PauI | GCGCGC | 1 cut(s) | 206 |
| PciI | ACATGT | 1 cut(s) | 94 |
| PdmI | GAANNNNTTC | 1 cut(s) | 846 |
| PfeI | GAWTC | 2 cut(s) | 35, 60 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1305, 1454 |
| PinAI | ACCGGT | 1 cut(s) | 52 |
| PkrI | GCNGC | 3 cut(s) | 254, 257, 741 |
| PleI | GAGTC | 3 cut(s) | 755, 907, 1101 |
| PluTI | GGCGCC | 1 cut(s) | 1128 |
| PpsI | GAGTC | 3 cut(s) | 755, 907, 1101 |
| PscI | ACATGT | 1 cut(s) | 94 |
| PshAI | GACNNNNGTC | 1 cut(s) | 97 |
| Psp1406I | AACGTT | 1 cut(s) | 753 |
| Psp6I | CCWGG | 2 cut(s) | 224, 1127 |
| PspGI | CCWGG | 2 cut(s) | 224, 1127 |
| PspN4I | GGNNCC | 5 cut(s) | 509, 545, 1126, 1225, 1260 |
| PspPI | GGNCC | 3 cut(s) | 228, 508, 1171 |
| PspXI | VCTCGAGB | 1 cut(s) | 734 |
| PstI | CTGCAG | 1 cut(s) | 254 |
| PstNI | CAGNNNCTG | 2 cut(s) | 277, 1454 |
| PsuI | RGATCY | 5 cut(s) | 113, 134, 543, 555, 1444 |
| PteI | GCGCGC | 1 cut(s) | 206 |
| RsaI | GTAC | 3 cut(s) | 695, 825, 1349 |
| RsaNI | GTAC | 3 cut(s) | 694, 824, 1348 |
| RseI | CAYNNNNRTG | 2 cut(s) | 672, 1272 |
| SaqAI | TTAA | 2 cut(s) | 531, 1468 |
| SatI | GCNGC | 3 cut(s) | 253, 256, 740 |
| Sau96I | GGNCC | 3 cut(s) | 228, 508, 1171 |
| SchI | GAGTC | 3 cut(s) | 755, 907, 1102 |
| ScrFI | CCNGG | 2 cut(s) | 226, 1129 |
| SduI | GDGCHC | 5 cut(s) | 181, 190, 203, 246, 522 |
| SfaNI | GCATC | 5 cut(s) | 166, 535, 993, 1264, 1304 |
| SfcI | CTRYAG | 1 cut(s) | 250 |
| SfoI | GGCGCC | 1 cut(s) | 1126 |
| Sfr274I | CTCGAG | 1 cut(s) | 734 |
| SinI | GGWCC | 2 cut(s) | 508, 1171 |
| SlaI | CTCGAG | 1 cut(s) | 734 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 672, 1272 |
| SmlI | CTYRAG | 2 cut(s) | 530, 734 |
| SmoI | CTYRAG | 2 cut(s) | 530, 734 |
| SphI | GCATGC | 1 cut(s) | 1219 |
| Sse9I | AATT | 7 cut(s) | 27, 651, 835, 1098, 1152, 1378, 1430 |
| SsiI | CCGC | 3 cut(s) | 262, 600, 802 |
| SspDI | GGCGCC | 1 cut(s) | 1124 |
| SspMI | CTAG | 5 cut(s) | 282, 413, 476, 1065, 1238 |
| StyD4I | CCNGG | 2 cut(s) | 224, 1127 |
| StyI | CCWWGG | 1 cut(s) | 1237 |
| TaaI | ACNGT | 2 cut(s) | 279, 1228 |
| TaiI | ACGT | 4 cut(s) | 579, 756, 1167, 1358 |
| TaqI | TCGA | 7 cut(s) | 63, 120, 195, 217, 735, 906, 1249 |
| TasI | AATT | 7 cut(s) | 27, 651, 835, 1098, 1152, 1378, 1430 |
| TatI | WGTACW | 2 cut(s) | 823, 1347 |
| TfiI | GAWTC | 2 cut(s) | 35, 60 |
| Tru1I | TTAA | 2 cut(s) | 531, 1468 |
| Tru9I | TTAA | 2 cut(s) | 531, 1468 |
| TscAI | CASTG | 1 cut(s) | 895 |
| TseFI | GTSAC | 1 cut(s) | 758 |
| TseI | GCWGC | 3 cut(s) | 252, 255, 739 |
| Tsp45I | GTSAC | 1 cut(s) | 758 |
| TspDTI | ATGAA | 4 cut(s) | 651, 686, 986, 1031 |
| TspGWI | ACGGA | 2 cut(s) | 500, 1236 |
| TspRI | CASTG | 1 cut(s) | 895 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1305, 1454 |
| Vha464I | CTTAAG | 1 cut(s) | 530 |
| VneI | GTGCAC | 1 cut(s) | 186 |
| VpaK11BI | GGWCC | 2 cut(s) | 508, 1171 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 325, 701, 1118 |
| XapI | RAATTY | 1 cut(s) | 1430 |
| XbaI | TCTAGA | 1 cut(s) | 1064 |
| XceI | RCATGY | 3 cut(s) | 98, 1219, 1320 |
| XhoI | CTCGAG | 1 cut(s) | 734 |
| XmaJI | CCTAGG | 1 cut(s) | 1237 |
| XmnI | GAANNNNTTC | 1 cut(s) | 846 |
| XspI | CTAG | 5 cut(s) | 282, 413, 476, 1065, 1238 |