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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 2 cut(s) | 468, 626 |
| AciI | CCGC | 2 cut(s) | 145, 453 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AgsI | TTSAA | 2 cut(s) | 160, 664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 356, 528 |
| AluI | AGCT | 2 cut(s) | 356, 528 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 1 cut(s) | 405 |
| AoxI | GGCC | 1 cut(s) | 613 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 629, 824 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BalI | TGGCCA | 1 cut(s) | 615 |
| BanI | GGYRCC | 2 cut(s) | 468, 626 |
| BanII | GRGCYC | 1 cut(s) | 647 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| BccI | CCATC | 2 cut(s) | 126, 280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 2 cut(s) | 122, 719 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 3 cut(s) | 470, 569, 628 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 22, 384 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 615 |
| BshNI | GGYRCC | 2 cut(s) | 468, 626 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BslFI | GGGAC | 1 cut(s) | 435 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 435 |
| BsnI | GGCC | 1 cut(s) | 615 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 647 |
| Bsp143I | GATC | 2 cut(s) | 228, 410 |
| BspACI | CCGC | 2 cut(s) | 145, 453 |
| BspANI | GGCC | 1 cut(s) | 615 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 470, 569, 628 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspT107I | GGYRCC | 2 cut(s) | 468, 626 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 2 cut(s) | 228, 410 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 3 cut(s) | 491, 639, 828 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstF5I | GGATG | 2 cut(s) | 22, 384 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 2 cut(s) | 629, 824 |
| BstKTI | GATC | 2 cut(s) | 231, 413 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 2 cut(s) | 228, 410 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 721 |
| BstNSI | RCATGY | 1 cut(s) | 771 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 1 cut(s) | 615 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 629, 824 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 665 |
| CviAII | CATG | 5 cut(s) | 341, 377, 617, 756, 768 |
| CviJI | RGCY | 7 cut(s) | 64, 141, 356, 528, 615, 645, 744 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 141, 356, 528, 615, 645, 744 |
| DdeI | CTNAG | 3 cut(s) | 491, 639, 828 |
| DinI | GGCGCC | 1 cut(s) | 628 |
| DpnI | GATC | 2 cut(s) | 230, 412 |
| DpnII | GATC | 2 cut(s) | 228, 410 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Eco24I | GRGCYC | 1 cut(s) | 647 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 647 |
| EgeI | GGCGCC | 1 cut(s) | 628 |
| EheI | GGCGCC | 1 cut(s) | 628 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 344, 380, 620, 759, 771 |
| FaqI | GGGAC | 1 cut(s) | 435 |
| FatI | CATG | 5 cut(s) | 340, 376, 616, 755, 767 |
| FauI | CCCGC | 1 cut(s) | 460 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 371 |
| FriOI | GRGCYC | 1 cut(s) | 647 |
| FspBI | CTAG | 2 cut(s) | 122, 719 |
| GlaI | GCGC | 2 cut(s) | 628, 823 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HaeIII | GGCC | 1 cut(s) | 615 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 2 cut(s) | 629, 824 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 5 cut(s) | 344, 380, 620, 759, 771 |
| Hin6I | GCGC | 2 cut(s) | 627, 822 |
| HinP1I | GCGC | 2 cut(s) | 627, 822 |
| HinfI | GANTC | 8 cut(s) | 4, 20, 104, 256, 306, 327, 437, 726 |
| Hpy166II | GTNNAC | 1 cut(s) | 581 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 170, 341, 408, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 581 |
| Hpy99I | CGWCG | 1 cut(s) | 750 |
| HpyAV | CCTTC | 2 cut(s) | 54, 533 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 508, 583 |
| HpyCH4V | TGCA | 3 cut(s) | 281, 320, 794 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 721 |
| HpyF3I | CTNAG | 3 cut(s) | 491, 639, 828 |
| HpySE526I | ACGT | 3 cut(s) | 96, 508, 583 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 5 cut(s) | 344, 380, 620, 759, 771 |
| HspAI | GCGC | 2 cut(s) | 627, 822 |
| KasI | GGCGCC | 1 cut(s) | 626 |
| Kzo9I | GATC | 2 cut(s) | 228, 410 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 122, 129, 419, 498, 597 |
| MaeI | CTAG | 2 cut(s) | 122, 719 |
| MaeII | ACGT | 3 cut(s) | 96, 508, 583 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 364 |
| MalI | GATC | 2 cut(s) | 230, 412 |
| MboI | GATC | 2 cut(s) | 228, 410 |
| MboII | GAAGA | 5 cut(s) | 59, 62, 92, 265, 406 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 647 |
| MlsI | TGGCCA | 1 cut(s) | 615 |
| MluCI | AATT | 3 cut(s) | 212, 403, 442 |
| MluNI | TGGCCA | 1 cut(s) | 615 |
| Mly113I | GGCGCC | 1 cut(s) | 627 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 431 |
| MnlI | CCTC | 9 cut(s) | 152, 458, 569, 589, 593, 619, 657, 681, 810 |
| Mox20I | TGGCCA | 1 cut(s) | 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 615 |
| MseI | TTAA | 3 cut(s) | 198, 206, 249 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 389, 621, 734 |
| Msp20I | TGGCCA | 1 cut(s) | 615 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 721 |
| NarI | GGCGCC | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 228, 410 |
| NlaIII | CATG | 5 cut(s) | 344, 380, 620, 759, 771 |
| NlaIV | GGNNCC | 3 cut(s) | 470, 569, 628 |
| NmuCI | GTSAC | 2 cut(s) | 101, 364 |
| NspI | RCATGY | 1 cut(s) | 771 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 4 cut(s) | 20, 306, 327, 726 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 431 |
| PluTI | GGCGCC | 1 cut(s) | 630 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 431 |
| PspN4I | GGNNCC | 3 cut(s) | 470, 569, 628 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 389, 621, 734 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 249 |
| Sau3AI | GATC | 2 cut(s) | 228, 410 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 431 |
| SduI | GDGCHC | 1 cut(s) | 647 |
| SfoI | GGCGCC | 1 cut(s) | 628 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 389, 621, 734 |
| Sse9I | AATT | 3 cut(s) | 212, 403, 442 |
| SsiI | CCGC | 2 cut(s) | 145, 453 |
| SspDI | GGCGCC | 1 cut(s) | 626 |
| SspMI | CTAG | 2 cut(s) | 122, 719 |
| TaiI | ACGT | 3 cut(s) | 99, 511, 586 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 309, 407 |
| TasI | AATT | 3 cut(s) | 212, 403, 442 |
| TfiI | GAWTC | 4 cut(s) | 20, 306, 327, 726 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 249 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 249 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TseFI | GTSAC | 2 cut(s) | 101, 364 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 364 |
| TspDTI | ATGAA | 7 cut(s) | 56, 60, 329, 337, 374, 744, 752 |
| TspGWI | ACGGA | 5 cut(s) | 89, 154, 403, 580, 763 |
| TspRI | CASTG | 1 cut(s) | 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 771 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 719 |