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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 738 |
| AccII | CGCG | 2 cut(s) | 9, 723 |
| AciI | CCGC | 3 cut(s) | 9, 101, 849 |
| AclWI | GGATC | 1 cut(s) | 675 |
| AcoI | YGGCCR | 2 cut(s) | 118, 155 |
| AcsI | RAATTY | 1 cut(s) | 482 |
| AcyI | GRCGYC | 1 cut(s) | 739 |
| AdeI | CACNNNGTG | 1 cut(s) | 889 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 30, 734 |
| AgsI | TTSAA | 1 cut(s) | 430 |
| AjiI | CACGTC | 1 cut(s) | 307 |
| AjnI | CCWGG | 1 cut(s) | 300 |
| AluBI | AGCT | 7 cut(s) | 219, 326, 332, 616, 626, 830, 881 |
| AluI | AGCT | 7 cut(s) | 219, 326, 332, 616, 626, 830, 881 |
| Alw21I | GWGCWC | 2 cut(s) | 618, 832 |
| Alw26I | GTCTC | 1 cut(s) | 550 |
| AlwI | GGATC | 1 cut(s) | 675 |
| AoxI | GGCC | 5 cut(s) | 10, 70, 118, 155, 264 |
| ApeKI | GCWGC | 1 cut(s) | 350 |
| ApoI | RAATTY | 1 cut(s) | 482 |
| AspLEI | GCGC | 3 cut(s) | 68, 725, 741 |
| AspS9I | GGNCC | 3 cut(s) | 11, 34, 785 |
| AsuHPI | GGTGA | 1 cut(s) | 838 |
| AvaII | GGWCC | 2 cut(s) | 34, 785 |
| BanI | GGYRCC | 1 cut(s) | 738 |
| BanII | GRGCYC | 2 cut(s) | 618, 832 |
| BauI | CACGAG | 1 cut(s) | 290 |
| BbsI | GAAGAC | 1 cut(s) | 530 |
| Bbv12I | GWGCWC | 2 cut(s) | 618, 832 |
| BbvI | GCAGC | 1 cut(s) | 362 |
| BccI | CCATC | 6 cut(s) | 81, 228, 263, 386, 396, 550 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 274, 308 |
| BciT130I | CCWGG | 1 cut(s) | 302 |
| BcoDI | GTCTC | 1 cut(s) | 550 |
| BfaI | CTAG | 4 cut(s) | 216, 278, 297, 917 |
| BfoI | RGCGCY | 1 cut(s) | 742 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 359 |
| BisI | GCNGC | 2 cut(s) | 10, 351 |
| BlsI | GCNGC | 2 cut(s) | 11, 352 |
| Bme1390I | CCNGG | 1 cut(s) | 302 |
| Bme18I | GGWCC | 2 cut(s) | 34, 785 |
| BmgBI | CACGTC | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 3 cut(s) | 11, 34, 785 |
| BmiI | GGNNCC | 2 cut(s) | 35, 740 |
| BmrFI | CCNGG | 1 cut(s) | 302 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BpiI | GAAGAC | 1 cut(s) | 530 |
| BpuEI | CTTGAG | 3 cut(s) | 245, 312, 378 |
| Bsa29I | ATCGAT | 1 cut(s) | 579 |
| BsaHI | GRCGYC | 1 cut(s) | 739 |
| BsaJI | CCNNGG | 1 cut(s) | 684 |
| BsaWI | WCCGGW | 1 cut(s) | 88 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 30, 734 |
| BseBI | CCWGG | 1 cut(s) | 302 |
| BseCI | ATCGAT | 1 cut(s) | 579 |
| BseDI | CCNNGG | 1 cut(s) | 684 |
| BseGI | GGATG | 4 cut(s) | 177, 381, 654, 782 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 30, 734 |
| BseXI | GCAGC | 1 cut(s) | 362 |
| Bsh1236I | CGCG | 2 cut(s) | 9, 723 |
| BshFI | GGCC | 5 cut(s) | 12, 72, 120, 157, 266 |
| BshNI | GGYRCC | 1 cut(s) | 738 |
| BshVI | ATCGAT | 1 cut(s) | 579 |
| BsiHKAI | GWGCWC | 2 cut(s) | 618, 832 |
| BsiSI | CCGG | 3 cut(s) | 89, 117, 154 |
| BslFI | GGGAC | 1 cut(s) | 47 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 30, 734 |
| BsmAI | GTCTC | 1 cut(s) | 550 |
| BsmBI | CGTCTC | 1 cut(s) | 550 |
| BsmFI | GGGAC | 1 cut(s) | 47 |
| BsnI | GGCC | 5 cut(s) | 12, 72, 120, 157, 266 |
| Bsp1286I | GDGCHC | 2 cut(s) | 618, 832 |
| Bsp143I | GATC | 4 cut(s) | 498, 680, 901, 913 |
| BspACI | CCGC | 3 cut(s) | 9, 101, 849 |
| BspANI | GGCC | 5 cut(s) | 12, 72, 120, 157, 266 |
| BspDI | ATCGAT | 1 cut(s) | 579 |
| BspFNI | CGCG | 2 cut(s) | 9, 723 |
| BspHI | TCATGA | 2 cut(s) | 610, 832 |
| BspLI | GGNNCC | 2 cut(s) | 35, 740 |
| BspPI | GGATC | 1 cut(s) | 675 |
| BspT107I | GGYRCC | 1 cut(s) | 738 |
| BssECI | CCNNGG | 1 cut(s) | 684 |
| BssMI | GATC | 4 cut(s) | 498, 680, 901, 913 |
| BssNI | GRCGYC | 1 cut(s) | 739 |
| BssSI | CACGAG | 1 cut(s) | 290 |
| Bst2BI | CACGAG | 1 cut(s) | 290 |
| Bst2UI | CCWGG | 1 cut(s) | 302 |
| Bst4CI | ACNGT | 1 cut(s) | 589 |
| BstACI | GRCGYC | 1 cut(s) | 739 |
| BstC8I | GCNNGC | 2 cut(s) | 70, 324 |
| BstDEI | CTNAG | 3 cut(s) | 355, 564, 761 |
| BstDSI | CCRYGG | 1 cut(s) | 684 |
| BstF5I | GGATG | 4 cut(s) | 177, 381, 654, 782 |
| BstFNI | CGCG | 2 cut(s) | 9, 723 |
| BstH2I | RGCGCY | 1 cut(s) | 742 |
| BstHHI | GCGC | 3 cut(s) | 68, 725, 741 |
| BstKTI | GATC | 4 cut(s) | 501, 683, 904, 916 |
| BstMAI | GTCTC | 1 cut(s) | 550 |
| BstMBI | GATC | 4 cut(s) | 498, 680, 901, 913 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 359, 368, 745, 857, 878 |
| BstNI | CCWGG | 1 cut(s) | 302 |
| BstSCI | CCNGG | 1 cut(s) | 300 |
| BstUI | CGCG | 2 cut(s) | 9, 723 |
| BstV1I | GCAGC | 1 cut(s) | 362 |
| BstV2I | GAAGAC | 1 cut(s) | 530 |
| BstX2I | RGATCY | 1 cut(s) | 680 |
| BstYI | RGATCY | 1 cut(s) | 680 |
| Bsu15I | ATCGAT | 1 cut(s) | 579 |
| BsuRI | GGCC | 5 cut(s) | 12, 72, 120, 157, 266 |
| BsuTUI | ATCGAT | 1 cut(s) | 579 |
| BtgI | CCRYGG | 1 cut(s) | 684 |
| BtrI | CACGTC | 1 cut(s) | 307 |
| BtsCI | GGATG | 4 cut(s) | 177, 381, 654, 782 |
| Cac8I | GCNNGC | 2 cut(s) | 70, 324 |
| CciI | TCATGA | 2 cut(s) | 610, 832 |
| CfoI | GCGC | 3 cut(s) | 68, 725, 741 |
| Cfr13I | GGNCC | 3 cut(s) | 11, 34, 785 |
| ClaI | ATCGAT | 1 cut(s) | 579 |
| CviAII | CATG | 4 cut(s) | 98, 611, 647, 833 |
| DdeI | CTNAG | 3 cut(s) | 355, 564, 761 |
| DinI | GGCGCC | 1 cut(s) | 740 |
| DpnI | GATC | 4 cut(s) | 500, 682, 903, 915 |
| DpnII | GATC | 4 cut(s) | 498, 680, 901, 913 |
| DraIII | CACNNNGTG | 1 cut(s) | 889 |
| EaeI | YGGCCR | 2 cut(s) | 118, 155 |
| Ecl136II | GAGCTC | 2 cut(s) | 616, 830 |
| Eco24I | GRGCYC | 2 cut(s) | 618, 832 |
| Eco32I | GATATC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 2 cut(s) | 34, 785 |
| Eco53kI | GAGCTC | 2 cut(s) | 616, 830 |
| EcoICRI | GAGCTC | 2 cut(s) | 616, 830 |
| EcoRI | GAATTC | 1 cut(s) | 482 |
| EcoRII | CCWGG | 1 cut(s) | 300 |
| EcoRV | GATATC | 1 cut(s) | 227 |
| EcoT38I | GRGCYC | 2 cut(s) | 618, 832 |
| EgeI | GGCGCC | 1 cut(s) | 740 |
| EheI | GGCGCC | 1 cut(s) | 740 |
| Esp3I | CGTCTC | 1 cut(s) | 550 |
| FaeI | CATG | 4 cut(s) | 101, 614, 650, 836 |
| FaqI | GGGAC | 1 cut(s) | 47 |
| FatI | CATG | 4 cut(s) | 97, 610, 646, 832 |
| Fnu4HI | GCNGC | 2 cut(s) | 10, 351 |
| FokI | GGATG | 4 cut(s) | 184, 368, 641, 789 |
| FriOI | GRGCYC | 2 cut(s) | 618, 832 |
| Fsp4HI | GCNGC | 2 cut(s) | 10, 351 |
| FspBI | CTAG | 4 cut(s) | 216, 278, 297, 917 |
| GlaI | GCGC | 3 cut(s) | 67, 724, 740 |
| GluI | GCNGC | 2 cut(s) | 10, 351 |
| HaeII | RGCGCY | 1 cut(s) | 742 |
| HaeIII | GGCC | 5 cut(s) | 12, 72, 120, 157, 266 |
| HapII | CCGG | 3 cut(s) | 89, 117, 154 |
| HhaI | GCGC | 3 cut(s) | 68, 725, 741 |
| Hin1I | GRCGYC | 1 cut(s) | 739 |
| Hin1II | CATG | 4 cut(s) | 101, 614, 650, 836 |
| Hin6I | GCGC | 3 cut(s) | 66, 723, 739 |
| HinP1I | GCGC | 3 cut(s) | 66, 723, 739 |
| HincII | GTYRAC | 3 cut(s) | 81, 94, 106 |
| HindII | GTYRAC | 3 cut(s) | 81, 94, 106 |
| HindIII | AAGCTT | 1 cut(s) | 330 |
| HinfI | GANTC | 8 cut(s) | 273, 286, 338, 391, 526, 576, 597, 707 |
| HpaII | CCGG | 3 cut(s) | 89, 117, 154 |
| HphI | GGTGA | 1 cut(s) | 838 |
| Hpy166II | GTNNAC | 4 cut(s) | 81, 94, 106, 250 |
| Hpy188I | TCNGA | 1 cut(s) | 602 |
| Hpy188III | TCNNGA | 8 cut(s) | 222, 242, 440, 611, 704, 833, 905, 917 |
| Hpy8I | GTNNAC | 4 cut(s) | 81, 94, 106, 250 |
| HpyAV | CCTTC | 6 cut(s) | 55, 95, 422, 547, 597, 803 |
| HpyCH4III | ACNGT | 1 cut(s) | 589 |
| HpyCH4IV | ACGT | 1 cut(s) | 306 |
| HpyCH4V | TGCA | 1 cut(s) | 551 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 359, 368, 745, 857, 878 |
| HpyF3I | CTNAG | 3 cut(s) | 355, 564, 761 |
| HpySE526I | ACGT | 1 cut(s) | 306 |
| Hsp92I | GRCGYC | 1 cut(s) | 739 |
| Hsp92II | CATG | 4 cut(s) | 101, 614, 650, 836 |
| HspAI | GCGC | 3 cut(s) | 66, 723, 739 |
| KasI | GGCGCC | 1 cut(s) | 738 |
| Kzo9I | GATC | 4 cut(s) | 498, 680, 901, 913 |
| LmnI | GCTCC | 2 cut(s) | 205, 623 |
| Lsp1109I | GCAGC | 1 cut(s) | 362 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 4 cut(s) | 216, 278, 297, 917 |
| MaeII | ACGT | 1 cut(s) | 306 |
| MaeIII | GTNAC | 3 cut(s) | 176, 583, 844 |
| MalI | GATC | 4 cut(s) | 500, 682, 903, 915 |
| MboI | GATC | 4 cut(s) | 498, 680, 901, 913 |
| MboII | GAAGA | 5 cut(s) | 535, 676, 848, 911, 920 |
| MflI | RGATCY | 1 cut(s) | 680 |
| MhlI | GDGCHC | 2 cut(s) | 618, 832 |
| MluCI | AATT | 5 cut(s) | 188, 482, 673, 712, 840 |
| Mly113I | GGCGCC | 1 cut(s) | 739 |
| MlyI | GAGTC | 2 cut(s) | 385, 520 |
| MnlI | CCTC | 4 cut(s) | 15, 162, 352, 728 |
| MseI | TTAA | 2 cut(s) | 468, 476 |
| MslI | CAYNNNNRTG | 3 cut(s) | 386, 659, 775 |
| MspI | CCGG | 3 cut(s) | 89, 117, 154 |
| MspR9I | CCNGG | 1 cut(s) | 302 |
| MvaI | CCWGG | 1 cut(s) | 302 |
| MvnI | CGCG | 2 cut(s) | 9, 723 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 359, 368, 745, 857, 878 |
| NarI | GGCGCC | 1 cut(s) | 739 |
| NdeII | GATC | 4 cut(s) | 498, 680, 901, 913 |
| NlaIII | CATG | 4 cut(s) | 101, 614, 650, 836 |
| NlaIV | GGNNCC | 2 cut(s) | 35, 740 |
| NmuCI | GTSAC | 1 cut(s) | 844 |
| PagI | TCATGA | 2 cut(s) | 610, 832 |
| PfeI | GAWTC | 6 cut(s) | 273, 286, 338, 576, 597, 707 |
| PkrI | GCNGC | 2 cut(s) | 11, 352 |
| PleI | GAGTC | 2 cut(s) | 385, 520 |
| PluTI | GGCGCC | 1 cut(s) | 742 |
| PpsI | GAGTC | 2 cut(s) | 385, 520 |
| Psp124BI | GAGCTC | 2 cut(s) | 618, 832 |
| Psp6I | CCWGG | 1 cut(s) | 300 |
| PspGI | CCWGG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 2 cut(s) | 35, 740 |
| PspPI | GGNCC | 3 cut(s) | 11, 34, 785 |
| PsuI | RGATCY | 1 cut(s) | 680 |
| RseI | CAYNNNNRTG | 3 cut(s) | 386, 659, 775 |
| SacI | GAGCTC | 2 cut(s) | 618, 832 |
| SaqAI | TTAA | 2 cut(s) | 468, 476 |
| SatI | GCNGC | 2 cut(s) | 10, 351 |
| Sau3AI | GATC | 4 cut(s) | 498, 680, 901, 913 |
| Sau96I | GGNCC | 3 cut(s) | 11, 34, 785 |
| SchI | GAGTC | 2 cut(s) | 385, 520 |
| ScrFI | CCNGG | 1 cut(s) | 302 |
| SduI | GDGCHC | 2 cut(s) | 618, 832 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfoI | GGCGCC | 1 cut(s) | 740 |
| SinI | GGWCC | 2 cut(s) | 34, 785 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 386, 659, 775 |
| SmlI | CTYRAG | 3 cut(s) | 260, 327, 393 |
| SmoI | CTYRAG | 3 cut(s) | 260, 327, 393 |
| Sse9I | AATT | 5 cut(s) | 188, 482, 673, 712, 840 |
| SsiI | CCGC | 3 cut(s) | 9, 101, 849 |
| SspDI | GGCGCC | 1 cut(s) | 738 |
| SspMI | CTAG | 4 cut(s) | 216, 278, 297, 917 |
| SstI | GAGCTC | 2 cut(s) | 618, 832 |
| StyD4I | CCNGG | 1 cut(s) | 300 |
| TaaI | ACNGT | 1 cut(s) | 589 |
| TaiI | ACGT | 1 cut(s) | 309 |
| TaqI | TCGA | 4 cut(s) | 167, 452, 574, 579 |
| TasI | AATT | 5 cut(s) | 188, 482, 673, 712, 840 |
| TauI | GCSGC | 1 cut(s) | 12 |
| TfiI | GAWTC | 6 cut(s) | 273, 286, 338, 576, 597, 707 |
| Tru1I | TTAA | 2 cut(s) | 468, 476 |
| Tru9I | TTAA | 2 cut(s) | 468, 476 |
| TseFI | GTSAC | 1 cut(s) | 844 |
| TseI | GCWGC | 1 cut(s) | 350 |
| Tsp45I | GTSAC | 1 cut(s) | 844 |
| TspDTI | ATGAA | 3 cut(s) | 599, 644, 849 |
| TspGWI | ACGGA | 1 cut(s) | 673 |
| VpaK11BI | GGWCC | 2 cut(s) | 34, 785 |
| XapI | RAATTY | 1 cut(s) | 482 |
| XbaI | TCTAGA | 1 cut(s) | 916 |
| XspI | CTAG | 4 cut(s) | 216, 278, 297, 917 |