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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AciI | CCGC | 1 cut(s) | 340 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 4 cut(s) | 22, 167, 269, 355 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 155, 179, 383 |
| AluI | AGCT | 3 cut(s) | 155, 179, 383 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 3 cut(s) | 32, 402, 475 |
| AoxI | GGCC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 112, 144 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AspLEI | GCGC | 2 cut(s) | 50, 81 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BbsI | GAAGAC | 2 cut(s) | 252, 455 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 5 cut(s) | 92, 122, 194, 321, 397 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 402, 475 |
| BfaI | CTAG | 2 cut(s) | 35, 126 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BpiI | GAAGAC | 2 cut(s) | 252, 455 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaBI | GATNNNNATC | 1 cut(s) | 440 |
| BsaJI | CCNNGG | 1 cut(s) | 260 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 1 cut(s) | 440 |
| BseDI | CCNNGG | 1 cut(s) | 260 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 1 cut(s) | 440 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 241 |
| BsmAI | GTCTC | 3 cut(s) | 32, 402, 475 |
| BsmBI | CGTCTC | 1 cut(s) | 475 |
| BsnI | GGCC | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 1 cut(s) | 441 |
| Bsp19I | CCATGG | 1 cut(s) | 260 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspQI | GCTCTTC | 1 cut(s) | 390 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 260 |
| BssMI | GATC | 1 cut(s) | 441 |
| BssT1I | CCWWGG | 1 cut(s) | 260 |
| Bst6I | CTCTTC | 1 cut(s) | 390 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstHHI | GCGC | 2 cut(s) | 50, 81 |
| BstKTI | GATC | 1 cut(s) | 444 |
| BstMAI | GTCTC | 3 cut(s) | 32, 402, 475 |
| BstMBI | GATC | 1 cut(s) | 441 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 455 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtgZI | GCGATG | 1 cut(s) | 340 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 2 cut(s) | 50, 81 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 224 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviAII | CATG | 3 cut(s) | 196, 208, 261 |
| CviJI | RGCY | 9 cut(s) | 95, 113, 124, 155, 179, 185, 259, 336, 383 |
| CviKI_1 | RGCY | 9 cut(s) | 95, 113, 124, 155, 179, 185, 259, 336, 383 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 1 cut(s) | 443 |
| DpnII | GATC | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 390 |
| Eco130I | CCWWGG | 1 cut(s) | 260 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 260 |
| ErhI | CCWWGG | 1 cut(s) | 260 |
| Esp3I | CGTCTC | 1 cut(s) | 475 |
| FaeI | CATG | 3 cut(s) | 199, 211, 264 |
| FaiI | YATR | 8 cut(s) | 60, 197, 209, 262, 333, 372, 425, 490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 3 cut(s) | 195, 207, 260 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 2 cut(s) | 35, 126 |
| GlaI | GCGC | 2 cut(s) | 49, 80 |
| GluI | GCNGC | 1 cut(s) | 278 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 2 cut(s) | 50, 81 |
| Hin1II | CATG | 3 cut(s) | 199, 211, 264 |
| Hin6I | GCGC | 2 cut(s) | 48, 79 |
| HinP1I | GCGC | 2 cut(s) | 48, 79 |
| HinfI | GANTC | 2 cut(s) | 299, 451 |
| Hpy166II | GTNNAC | 1 cut(s) | 416 |
| Hpy188I | TCNGA | 4 cut(s) | 71, 132, 379, 402 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 196, 296, 311, 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 416 |
| HpyAV | CCTTC | 1 cut(s) | 472 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 291 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 2 cut(s) | 135, 291 |
| Hsp92II | CATG | 3 cut(s) | 199, 211, 264 |
| HspAI | GCGC | 2 cut(s) | 48, 79 |
| Kzo9I | GATC | 1 cut(s) | 441 |
| LguI | GCTCTTC | 1 cut(s) | 390 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 36, 92, 317, 324 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 35, 126 |
| MaeII | ACGT | 2 cut(s) | 135, 291 |
| MaeIII | GTNAC | 2 cut(s) | 5, 296 |
| MalI | GATC | 1 cut(s) | 443 |
| MboI | GATC | 1 cut(s) | 441 |
| MboII | GAAGA | 3 cut(s) | 257, 377, 460 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlyI | GAGTC | 2 cut(s) | 293, 445 |
| MnlI | CCTC | 3 cut(s) | 235, 245, 347 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NcoI | CCATGG | 1 cut(s) | 260 |
| NdeII | GATC | 1 cut(s) | 441 |
| NlaIII | CATG | 3 cut(s) | 199, 211, 264 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 390 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 2 cut(s) | 293, 445 |
| PpsI | GAGTC | 2 cut(s) | 293, 445 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| RseI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| SapI | GCTCTTC | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 1 cut(s) | 441 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 2 cut(s) | 293, 445 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SetI | ASST | 9 cut(s) | 12, 65, 138, 157, 181, 237, 294, 385, 464 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| SmlI | CTYRAG | 2 cut(s) | 89, 272 |
| SmoI | CTYRAG | 2 cut(s) | 89, 272 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspMI | CTAG | 2 cut(s) | 35, 126 |
| StyI | CCWWGG | 1 cut(s) | 260 |
| TaiI | ACGT | 2 cut(s) | 138, 294 |
| TaqI | TCGA | 1 cut(s) | 444 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 2 cut(s) | 224, 477 |
| TspGWI | ACGGA | 1 cut(s) | 349 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 258, 400 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 2 cut(s) | 35, 126 |