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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 1 cut(s) | 289 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 110 |
| AcsI | RAATTY | 1 cut(s) | 356 |
| AcuI | CTGAAG | 1 cut(s) | 534 |
| AfaI | GTAC | 3 cut(s) | 254, 312, 598 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 262, 616, 688 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 237 |
| AgsI | TTSAA | 2 cut(s) | 167, 304 |
| AluBI | AGCT | 5 cut(s) | 179, 200, 279, 490, 512 |
| AluI | AGCT | 5 cut(s) | 179, 200, 279, 490, 512 |
| Alw26I | GTCTC | 2 cut(s) | 32, 424 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 110 |
| AoxI | GGCC | 1 cut(s) | 283 |
| ApoI | RAATTY | 1 cut(s) | 356 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 624 |
| AsuHPI | GGTGA | 1 cut(s) | 671 |
| AxyI | CCTNAGG | 2 cut(s) | 611, 639 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BccI | CCATC | 2 cut(s) | 92, 346 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 424 |
| BfaI | CTAG | 5 cut(s) | 35, 107, 272, 552, 657 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglII | AGATCT | 1 cut(s) | 554 |
| BmiI | GGNNCC | 1 cut(s) | 104 |
| BmsI | GCATC | 1 cut(s) | 375 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaBI | GATNNNNATC | 2 cut(s) | 389, 455 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 262, 616, 688 |
| Bse21I | CCTNAGG | 2 cut(s) | 611, 639 |
| Bse8I | GATNNNNATC | 2 cut(s) | 389, 455 |
| BseJI | GATNNNNATC | 2 cut(s) | 389, 455 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 262, 616, 688 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshFI | GGCC | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 262, 616, 688 |
| BsmAI | GTCTC | 2 cut(s) | 32, 424 |
| BsmBI | CGTCTC | 1 cut(s) | 424 |
| BsnI | GGCC | 1 cut(s) | 285 |
| Bsp143I | GATC | 3 cut(s) | 102, 114, 554 |
| BspACI | CCGC | 1 cut(s) | 289 |
| BspANI | GGCC | 1 cut(s) | 285 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspHI | TCATGA | 2 cut(s) | 216, 484 |
| BspLI | GGNNCC | 1 cut(s) | 104 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 110 |
| BspQI | GCTCTTC | 1 cut(s) | 510 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssMI | GATC | 3 cut(s) | 102, 114, 554 |
| Bst6I | CTCTTC | 1 cut(s) | 510 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 611, 639 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 260, 614 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 624 |
| BstKTI | GATC | 3 cut(s) | 105, 117, 557 |
| BstMAI | GTCTC | 2 cut(s) | 32, 424 |
| BstMBI | GATC | 3 cut(s) | 102, 114, 554 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 176, 197, 461, 628 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 2 cut(s) | 102, 554 |
| BstYI | RGATCY | 2 cut(s) | 102, 554 |
| Bsu36I | CCTNAGG | 2 cut(s) | 611, 639 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 285 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| CciI | TCATGA | 2 cut(s) | 216, 484 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 624 |
| CseI | GACGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 3 cut(s) | 253, 311, 597 |
| CviAII | CATG | 6 cut(s) | 136, 217, 229, 485, 502, 521 |
| CviJI | RGCY | 9 cut(s) | 95, 179, 200, 206, 279, 285, 437, 490, 512 |
| CviKI_1 | RGCY | 9 cut(s) | 95, 179, 200, 206, 279, 285, 437, 490, 512 |
| CviQI | GTAC | 3 cut(s) | 253, 311, 597 |
| DdeI | CTNAG | 2 cut(s) | 611, 639 |
| DpnI | GATC | 3 cut(s) | 104, 116, 556 |
| DpnII | GATC | 3 cut(s) | 102, 114, 554 |
| Eam1104I | CTCTTC | 1 cut(s) | 510 |
| EarI | CTCTTC | 1 cut(s) | 510 |
| Eco57I | CTGAAG | 1 cut(s) | 534 |
| Eco81I | CCTNAGG | 2 cut(s) | 611, 639 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 260, 614 |
| Esp3I | CGTCTC | 1 cut(s) | 424 |
| FaeI | CATG | 6 cut(s) | 139, 220, 232, 488, 505, 524 |
| FatI | CATG | 6 cut(s) | 135, 216, 228, 484, 501, 520 |
| FspBI | CTAG | 5 cut(s) | 35, 107, 272, 552, 657 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 623 |
| HaeIII | GGCC | 1 cut(s) | 285 |
| HgaI | GACGC | 1 cut(s) | 245 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 624 |
| Hin1II | CATG | 6 cut(s) | 139, 220, 232, 488, 505, 524 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 622 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 622 |
| HinfI | GANTC | 1 cut(s) | 122 |
| HphI | GGTGA | 1 cut(s) | 671 |
| Hpy188I | TCNGA | 4 cut(s) | 132, 328, 450, 579 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 217, 244, 394, 485, 552, 657 |
| HpyAV | CCTTC | 2 cut(s) | 421, 610 |
| HpyCH4IV | ACGT | 1 cut(s) | 507 |
| HpyCH4V | TGCA | 1 cut(s) | 425 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 176, 197, 461, 628 |
| HpyF3I | CTNAG | 2 cut(s) | 611, 639 |
| HpySE526I | ACGT | 1 cut(s) | 507 |
| Hsp92II | CATG | 6 cut(s) | 139, 220, 232, 488, 505, 524 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 622 |
| Kzo9I | GATC | 3 cut(s) | 102, 114, 554 |
| LguI | GCTCTTC | 1 cut(s) | 510 |
| LmnI | GCTCC | 3 cut(s) | 34, 563, 628 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 36, 257, 478, 651 |
| LweI | GCATC | 1 cut(s) | 375 |
| MaeI | CTAG | 5 cut(s) | 35, 107, 272, 552, 657 |
| MaeII | ACGT | 1 cut(s) | 507 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 3 cut(s) | 104, 116, 556 |
| MboI | GATC | 3 cut(s) | 102, 114, 554 |
| MboII | GAAGA | 4 cut(s) | 278, 527, 550, 704 |
| MflI | RGATCY | 2 cut(s) | 102, 554 |
| MluCI | AATT | 6 cut(s) | 210, 322, 356, 573, 586, 652 |
| MluI | ACGCGT | 1 cut(s) | 237 |
| MlyI | GAGTC | 1 cut(s) | 131 |
| MnlI | CCTC | 6 cut(s) | 156, 181, 256, 266, 296, 682 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MseI | TTAA | 2 cut(s) | 90, 342 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 533 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 176, 197, 461, 628 |
| NdeII | GATC | 3 cut(s) | 102, 114, 554 |
| NlaIII | CATG | 6 cut(s) | 139, 220, 232, 488, 505, 524 |
| NlaIV | GGNNCC | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PagI | TCATGA | 2 cut(s) | 216, 484 |
| PciSI | GCTCTTC | 1 cut(s) | 510 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PleI | GAGTC | 1 cut(s) | 130 |
| PpsI | GAGTC | 1 cut(s) | 130 |
| PspN4I | GGNNCC | 1 cut(s) | 104 |
| PsuI | RGATCY | 2 cut(s) | 102, 554 |
| RsaI | GTAC | 3 cut(s) | 254, 312, 598 |
| RsaNI | GTAC | 3 cut(s) | 253, 311, 597 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 533 |
| SapI | GCTCTTC | 1 cut(s) | 510 |
| SaqAI | TTAA | 2 cut(s) | 90, 342 |
| Sau3AI | GATC | 3 cut(s) | 102, 114, 554 |
| SchI | GAGTC | 1 cut(s) | 131 |
| SfaNI | GCATC | 1 cut(s) | 375 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 533 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 6 cut(s) | 210, 322, 356, 573, 586, 652 |
| SsiI | CCGC | 1 cut(s) | 289 |
| SspMI | CTAG | 5 cut(s) | 35, 107, 272, 552, 657 |
| TaiI | ACGT | 1 cut(s) | 510 |
| TaqI | TCGA | 1 cut(s) | 393 |
| TasI | AATT | 6 cut(s) | 210, 322, 356, 573, 586, 652 |
| TatI | WGTACW | 1 cut(s) | 310 |
| Tru1I | TTAA | 2 cut(s) | 90, 342 |
| Tru9I | TTAA | 2 cut(s) | 90, 342 |
| TscAI | CASTG | 1 cut(s) | 382 |
| TspDTI | ATGAA | 5 cut(s) | 210, 245, 473, 518, 660 |
| TspRI | CASTG | 1 cut(s) | 382 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 260, 614 |
| XapI | RAATTY | 1 cut(s) | 356 |
| XbaI | TCTAGA | 2 cut(s) | 551, 656 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 5 cut(s) | 35, 107, 272, 552, 657 |