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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccII | CGCG | 2 cut(s) | 453, 657 |
| AciI | CCGC | 2 cut(s) | 85, 145 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AfaI | GTAC | 3 cut(s) | 38, 168, 562 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| AgsI | TTSAA | 1 cut(s) | 173 |
| AluBI | AGCT | 4 cut(s) | 64, 346, 354, 368 |
| AluI | AGCT | 4 cut(s) | 64, 346, 354, 368 |
| Alw26I | GTCTC | 2 cut(s) | 261, 280 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| AoxI | GGCC | 1 cut(s) | 601 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 455, 659 |
| AspS9I | GGNCC | 2 cut(s) | 52, 515 |
| AsuHPI | GGTGA | 1 cut(s) | 635 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| AvaII | GGWCC | 2 cut(s) | 52, 515 |
| AxyI | CCTNAGG | 1 cut(s) | 459 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 5 cut(s) | 126, 202, 236, 283, 614 |
| BcoDI | GTCTC | 2 cut(s) | 261, 280 |
| BfaI | CTAG | 2 cut(s) | 57, 408 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| Bme18I | GGWCC | 2 cut(s) | 52, 515 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgT120I | GGNCC | 2 cut(s) | 52, 515 |
| BmiI | GGNNCC | 2 cut(s) | 54, 421 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 2 cut(s) | 414, 633 |
| BsaWI | WCCGGW | 1 cut(s) | 611 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| Bse21I | CCTNAGG | 1 cut(s) | 459 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 2 cut(s) | 414, 633 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| Bsh1236I | CGCG | 2 cut(s) | 453, 657 |
| BshFI | GGCC | 1 cut(s) | 603 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsiSI | CCGG | 1 cut(s) | 612 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 464, 535 |
| BsmAI | GTCTC | 2 cut(s) | 261, 280 |
| BsnI | GGCC | 1 cut(s) | 603 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspACI | CCGC | 2 cut(s) | 85, 145 |
| BspANI | GGCC | 1 cut(s) | 603 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspFNI | CGCG | 2 cut(s) | 453, 657 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 54, 421 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 2 cut(s) | 414, 633 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| BssT1I | CCWWGG | 1 cut(s) | 633 |
| Bst4CI | ACNGT | 1 cut(s) | 572 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 3 cut(s) | 369, 459, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 462 |
| BstFNI | CGCG | 2 cut(s) | 453, 657 |
| BstHHI | GCGC | 2 cut(s) | 455, 659 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 2 cut(s) | 261, 280 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 656 |
| BstUI | CGCG | 2 cut(s) | 453, 657 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| Bsu36I | CCTNAGG | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 603 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 455, 659 |
| Cfr13I | GGNCC | 2 cut(s) | 52, 515 |
| CseI | GACGC | 2 cut(s) | 333, 635 |
| Csp6I | GTAC | 3 cut(s) | 37, 167, 561 |
| CviAII | CATG | 5 cut(s) | 13, 341, 358, 377, 424 |
| CviJI | RGCY | 8 cut(s) | 64, 141, 188, 346, 354, 368, 603, 608 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 141, 188, 346, 354, 368, 603, 608 |
| CviQI | GTAC | 3 cut(s) | 37, 167, 561 |
| DdeI | CTNAG | 3 cut(s) | 369, 459, 486 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| Eco130I | CCWWGG | 1 cut(s) | 633 |
| Eco47I | GGWCC | 2 cut(s) | 52, 515 |
| Eco81I | CCTNAGG | 1 cut(s) | 459 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 462 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoT14I | CCWWGG | 1 cut(s) | 633 |
| ErhI | CCWWGG | 1 cut(s) | 633 |
| FaeI | CATG | 5 cut(s) | 16, 344, 361, 380, 427 |
| FatI | CATG | 5 cut(s) | 12, 340, 357, 376, 423 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 2 cut(s) | 57, 408 |
| GlaI | GCGC | 2 cut(s) | 454, 658 |
| GluI | GCNGC | 1 cut(s) | 83 |
| HaeIII | GGCC | 1 cut(s) | 603 |
| HapII | CCGG | 1 cut(s) | 612 |
| HgaI | GACGC | 2 cut(s) | 333, 635 |
| HhaI | GCGC | 2 cut(s) | 455, 659 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 5 cut(s) | 16, 344, 361, 380, 427 |
| Hin6I | GCGC | 2 cut(s) | 453, 657 |
| HinP1I | GCGC | 2 cut(s) | 453, 657 |
| HincII | GTYRAC | 1 cut(s) | 581 |
| HindII | GTYRAC | 1 cut(s) | 581 |
| HinfI | GANTC | 2 cut(s) | 104, 437 |
| HpaII | CCGG | 1 cut(s) | 612 |
| HphI | GGTGA | 1 cut(s) | 635 |
| Hpy166II | GTNNAC | 2 cut(s) | 563, 581 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 250, 341, 408, 434 |
| Hpy8I | GTNNAC | 2 cut(s) | 563, 581 |
| HpyAV | CCTTC | 2 cut(s) | 200, 533 |
| HpyCH4III | ACNGT | 1 cut(s) | 572 |
| HpyCH4IV | ACGT | 3 cut(s) | 469, 508, 583 |
| HpyCH4V | TGCA | 1 cut(s) | 320 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 656 |
| HpyF3I | CTNAG | 3 cut(s) | 369, 459, 486 |
| HpySE526I | ACGT | 3 cut(s) | 469, 508, 583 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 5 cut(s) | 16, 344, 361, 380, 427 |
| HspAI | GCGC | 2 cut(s) | 453, 657 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 2 cut(s) | 359, 475 |
| LpnPI | CCDG | 5 cut(s) | 129, 285, 447, 498, 625 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 1 cut(s) | 336 |
| MaeI | CTAG | 2 cut(s) | 57, 408 |
| MaeII | ACGT | 3 cut(s) | 469, 508, 583 |
| MaeIII | GTNAC | 2 cut(s) | 218, 623 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 1 cut(s) | 406 |
| MluCI | AATT | 4 cut(s) | 178, 298, 442, 499 |
| MlyI | GAGTC | 2 cut(s) | 98, 446 |
| MnlI | CCTC | 8 cut(s) | 40, 43, 152, 458, 529, 569, 593, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 2 cut(s) | 159, 673 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 1 cut(s) | 85 |
| MspI | CCGG | 1 cut(s) | 612 |
| MvnI | CGCG | 2 cut(s) | 453, 657 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 656 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 5 cut(s) | 16, 344, 361, 380, 427 |
| NlaIV | GGNNCC | 2 cut(s) | 54, 421 |
| NmuCI | GTSAC | 2 cut(s) | 218, 623 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 2 cut(s) | 98, 445 |
| PpsI | GAGTC | 2 cut(s) | 98, 445 |
| PpuMI | RGGWCCY | 1 cut(s) | 52 |
| Psp5II | RGGWCCY | 1 cut(s) | 52 |
| PspN4I | GGNNCC | 2 cut(s) | 54, 421 |
| PspPI | GGNCC | 2 cut(s) | 52, 515 |
| PspPPI | RGGWCCY | 1 cut(s) | 52 |
| PspXI | VCTCGAGB | 1 cut(s) | 77 |
| RsaI | GTAC | 3 cut(s) | 38, 168, 562 |
| RsaNI | GTAC | 3 cut(s) | 37, 167, 561 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SaqAI | TTAA | 2 cut(s) | 159, 673 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| Sau96I | GGNCC | 2 cut(s) | 52, 515 |
| SchI | GAGTC | 2 cut(s) | 98, 446 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SinI | GGWCC | 2 cut(s) | 52, 515 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 4 cut(s) | 178, 298, 442, 499 |
| SsiI | CCGC | 2 cut(s) | 85, 145 |
| SspMI | CTAG | 2 cut(s) | 57, 408 |
| StyI | CCWWGG | 1 cut(s) | 633 |
| TaaI | ACNGT | 1 cut(s) | 572 |
| TaiI | ACGT | 3 cut(s) | 472, 511, 586 |
| TaqI | TCGA | 2 cut(s) | 78, 249 |
| TasI | AATT | 4 cut(s) | 178, 298, 442, 499 |
| Tru1I | TTAA | 2 cut(s) | 159, 673 |
| Tru9I | TTAA | 2 cut(s) | 159, 673 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TseFI | GTSAC | 2 cut(s) | 218, 623 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 2 cut(s) | 218, 623 |
| TspDTI | ATGAA | 4 cut(s) | 29, 329, 374, 602 |
| TspGWI | ACGGA | 1 cut(s) | 154 |
| TspRI | CASTG | 1 cut(s) | 238 |
| VpaK11BI | GGWCC | 2 cut(s) | 52, 515 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 462 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 57, 408 |