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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 795 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1011 |
| AccBSI | CCGCTC | 1 cut(s) | 106 |
| AccII | CGCG | 9 cut(s) | 22, 65, 76, 100, 155, 171, 252, 276, 284 |
| AclWI | GGATC | 1 cut(s) | 722 |
| AcoI | YGGCCR | 1 cut(s) | 895 |
| AcsI | RAATTY | 2 cut(s) | 599, 622 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AcvI | CACGTG | 1 cut(s) | 56 |
| AfaI | GTAC | 1 cut(s) | 93 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1011 |
| AgsI | TTSAA | 1 cut(s) | 547 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 547 |
| AhlI | ACTAGT | 1 cut(s) | 88 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 459, 491 |
| AluBI | AGCT | 4 cut(s) | 320, 733, 743, 1031 |
| AluI | AGCT | 4 cut(s) | 320, 733, 743, 1031 |
| Alw21I | GWGCWC | 1 cut(s) | 1033 |
| Alw26I | GTCTC | 2 cut(s) | 463, 667 |
| AlwI | GGATC | 1 cut(s) | 722 |
| AoxI | GGCC | 2 cut(s) | 12, 895 |
| ApeKI | GCWGC | 1 cut(s) | 350 |
| ApoI | RAATTY | 2 cut(s) | 599, 622 |
| AspA2I | CCTAGG | 1 cut(s) | 308 |
| AspLEI | GCGC | 2 cut(s) | 24, 102 |
| AspS9I | GGNCC | 1 cut(s) | 797 |
| AsuHPI | GGTGA | 1 cut(s) | 1039 |
| AvaII | GGWCC | 1 cut(s) | 797 |
| AvrII | CCTAGG | 1 cut(s) | 308 |
| BaeGI | GKGCMC | 1 cut(s) | 1018 |
| BalI | TGGCCA | 1 cut(s) | 897 |
| BanII | GRGCYC | 1 cut(s) | 1033 |
| BauI | CACGAG | 2 cut(s) | 419, 1032 |
| BbrPI | CACGTG | 1 cut(s) | 56 |
| BbsI | GAAGAC | 2 cut(s) | 444, 647 |
| Bbv12I | GWGCWC | 1 cut(s) | 1033 |
| BbvI | GCAGC | 1 cut(s) | 362 |
| BccI | CCATC | 6 cut(s) | 296, 389, 513, 667, 875, 936 |
| BciVI | GTATCC | 1 cut(s) | 1012 |
| BcoDI | GTCTC | 2 cut(s) | 463, 667 |
| BcuI | ACTAGT | 1 cut(s) | 88 |
| BfaI | CTAG | 7 cut(s) | 89, 188, 296, 309, 509, 786, 1118 |
| BfmI | CTRYAG | 1 cut(s) | 705 |
| BfuI | GTATCC | 1 cut(s) | 1012 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 359 |
| BisI | GCNGC | 3 cut(s) | 156, 172, 351 |
| BlnI | CCTAGG | 1 cut(s) | 308 |
| BlsI | GCNGC | 3 cut(s) | 157, 173, 352 |
| Bme18I | GGWCC | 1 cut(s) | 797 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 547 |
| BmgT120I | GGNCC | 1 cut(s) | 797 |
| BmiI | GGNNCC | 3 cut(s) | 159, 851, 910 |
| BmsI | GCATC | 2 cut(s) | 172, 970 |
| BpiI | GAAGAC | 2 cut(s) | 444, 647 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 230, 262 |
| BpmI | CTGGAG | 1 cut(s) | 398 |
| BsaAI | YACGTR | 1 cut(s) | 56 |
| BsaI | GGTCTC | 1 cut(s) | 463 |
| BsaJI | CCNNGG | 1 cut(s) | 308 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1011 |
| Bse1I | ACTGG | 1 cut(s) | 1005 |
| BseDI | CCNNGG | 1 cut(s) | 308 |
| BseGI | GGATG | 6 cut(s) | 163, 216, 381, 409, 771, 886 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1011 |
| BseMII | CTCAG | 2 cut(s) | 582, 960 |
| BseNI | ACTGG | 1 cut(s) | 1005 |
| BseRI | GAGGAG | 1 cut(s) | 7 |
| BseSI | GKGCMC | 1 cut(s) | 1018 |
| BseXI | GCAGC | 1 cut(s) | 362 |
| Bsh1236I | CGCG | 9 cut(s) | 22, 65, 76, 100, 155, 171, 252, 276, 284 |
| BshFI | GGCC | 2 cut(s) | 14, 897 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1033 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1011 |
| BsmAI | GTCTC | 2 cut(s) | 463, 667 |
| BsmBI | CGTCTC | 1 cut(s) | 667 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| BsnI | GGCC | 2 cut(s) | 14, 897 |
| Bso31I | GGTCTC | 1 cut(s) | 463 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1018, 1033 |
| Bsp143I | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| BspANI | GGCC | 2 cut(s) | 14, 897 |
| BspCNI | CTCAG | 2 cut(s) | 581, 961 |
| BspFNI | CGCG | 9 cut(s) | 22, 65, 76, 100, 155, 171, 252, 276, 284 |
| BspHI | TCATGA | 1 cut(s) | 727 |
| BspLI | GGNNCC | 3 cut(s) | 159, 851, 910 |
| BspMAI | CTGCAG | 1 cut(s) | 709 |
| BspPI | GGATC | 1 cut(s) | 722 |
| BspTNI | GGTCTC | 1 cut(s) | 463 |
| BsrBI | CCGCTC | 1 cut(s) | 106 |
| BsrI | ACTGG | 1 cut(s) | 1005 |
| BssECI | CCNNGG | 1 cut(s) | 308 |
| BssMI | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| BssSI | CACGAG | 2 cut(s) | 419, 1032 |
| BssT1I | CCWWGG | 1 cut(s) | 308 |
| Bst2BI | CACGAG | 2 cut(s) | 419, 1032 |
| Bst6I | CTCTTC | 1 cut(s) | 850 |
| BstBAI | YACGTR | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 7 cut(s) | 12, 104, 108, 127, 131, 231, 322 |
| BstDEI | CTNAG | 7 cut(s) | 335, 355, 568, 578, 681, 921, 969 |
| BstF5I | GGATG | 6 cut(s) | 163, 216, 381, 409, 771, 886 |
| BstFNI | CGCG | 9 cut(s) | 22, 65, 76, 100, 155, 171, 252, 276, 284 |
| BstHHI | GCGC | 2 cut(s) | 24, 102 |
| BstKTI | GATC | 4 cut(s) | 618, 717, 1105, 1117 |
| BstMAI | GTCTC | 2 cut(s) | 463, 667 |
| BstMBI | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 326, 347, 359, 368, 1058 |
| BstNSI | RCATGY | 1 cut(s) | 987 |
| BstSFI | CTRYAG | 1 cut(s) | 705 |
| BstSLI | GKGCMC | 1 cut(s) | 1018 |
| BstUI | CGCG | 9 cut(s) | 22, 65, 76, 100, 155, 171, 252, 276, 284 |
| BstV1I | GCAGC | 1 cut(s) | 362 |
| BstV2I | GAAGAC | 2 cut(s) | 444, 647 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 905 |
| BsuI | GTATCC | 1 cut(s) | 1012 |
| BsuRI | GGCC | 2 cut(s) | 14, 897 |
| BtsCI | GGATG | 6 cut(s) | 163, 216, 381, 409, 771, 886 |
| Cac8I | GCNNGC | 7 cut(s) | 12, 104, 108, 127, 131, 231, 322 |
| CciI | TCATGA | 1 cut(s) | 727 |
| CfoI | GCGC | 2 cut(s) | 24, 102 |
| Cfr13I | GGNCC | 1 cut(s) | 797 |
| CseI | GACGC | 1 cut(s) | 59 |
| Csp6I | GTAC | 1 cut(s) | 92 |
| CviAII | CATG | 4 cut(s) | 728, 764, 899, 984 |
| CviQI | GTAC | 1 cut(s) | 92 |
| DdeI | CTNAG | 7 cut(s) | 335, 355, 568, 578, 681, 921, 969 |
| DpnI | GATC | 4 cut(s) | 617, 716, 1104, 1116 |
| DpnII | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| DraI | TTTAAA | 1 cut(s) | 945 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 795 |
| DriI | GACNNNNNGTC | 1 cut(s) | 547 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 795 |
| EaeI | YGGCCR | 1 cut(s) | 895 |
| Eam1104I | CTCTTC | 1 cut(s) | 850 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 547 |
| EarI | CTCTTC | 1 cut(s) | 850 |
| Ecl136II | GAGCTC | 1 cut(s) | 1031 |
| Eco130I | CCWWGG | 1 cut(s) | 308 |
| Eco24I | GRGCYC | 1 cut(s) | 1033 |
| Eco31I | GGTCTC | 1 cut(s) | 463 |
| Eco47I | GGWCC | 1 cut(s) | 797 |
| Eco53kI | GAGCTC | 1 cut(s) | 1031 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| Eco72I | CACGTG | 1 cut(s) | 56 |
| EcoICRI | GAGCTC | 1 cut(s) | 1031 |
| EcoRI | GAATTC | 1 cut(s) | 599 |
| EcoT14I | CCWWGG | 1 cut(s) | 308 |
| EcoT22I | ATGCAT | 1 cut(s) | 985 |
| EcoT38I | GRGCYC | 1 cut(s) | 1033 |
| ErhI | CCWWGG | 1 cut(s) | 308 |
| Esp3I | CGTCTC | 1 cut(s) | 667 |
| FaeI | CATG | 4 cut(s) | 731, 767, 902, 987 |
| FatI | CATG | 4 cut(s) | 727, 763, 898, 983 |
| FauI | CCCGC | 3 cut(s) | 111, 257, 281 |
| FauNDI | CATATG | 1 cut(s) | 399 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 172, 351 |
| FokI | GGATG | 6 cut(s) | 150, 203, 368, 416, 758, 893 |
| FriOI | GRGCYC | 1 cut(s) | 1033 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 172, 351 |
| FspBI | CTAG | 7 cut(s) | 89, 188, 296, 309, 509, 786, 1118 |
| GlaI | GCGC | 2 cut(s) | 23, 101 |
| GluI | GCNGC | 3 cut(s) | 156, 172, 351 |
| GsuI | CTGGAG | 1 cut(s) | 398 |
| HaeIII | GGCC | 2 cut(s) | 14, 897 |
| HgaI | GACGC | 1 cut(s) | 59 |
| HhaI | GCGC | 2 cut(s) | 24, 102 |
| Hin1II | CATG | 4 cut(s) | 731, 767, 902, 987 |
| Hin6I | GCGC | 2 cut(s) | 22, 100 |
| HinP1I | GCGC | 2 cut(s) | 22, 100 |
| HincII | GTYRAC | 1 cut(s) | 863 |
| HindII | GTYRAC | 1 cut(s) | 863 |
| HinfI | GANTC | 8 cut(s) | 35, 141, 391, 407, 491, 643, 693, 965 |
| HphI | GGTGA | 1 cut(s) | 1039 |
| Hpy166II | GTNNAC | 2 cut(s) | 863, 1084 |
| Hpy188I | TCNGA | 2 cut(s) | 571, 970 |
| Hpy188III | TCNNGA | 7 cut(s) | 138, 557, 728, 786, 990, 1034, 1118 |
| Hpy8I | GTNNAC | 2 cut(s) | 863, 1084 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 2 cut(s) | 664, 815 |
| HpyCH4IV | ACGT | 3 cut(s) | 55, 483, 865 |
| HpyCH4V | TGCA | 5 cut(s) | 179, 329, 668, 707, 983 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 326, 347, 359, 368, 1058 |
| HpyF3I | CTNAG | 7 cut(s) | 335, 355, 568, 578, 681, 921, 969 |
| HpySE526I | ACGT | 3 cut(s) | 55, 483, 865 |
| Hsp92II | CATG | 4 cut(s) | 731, 767, 902, 987 |
| HspAI | GCGC | 2 cut(s) | 22, 100 |
| Kzo9I | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| LmnI | GCTCC | 3 cut(s) | 163, 740, 908 |
| Lsp1109I | GCAGC | 1 cut(s) | 362 |
| LweI | GCATC | 2 cut(s) | 172, 970 |
| MaeI | CTAG | 7 cut(s) | 89, 188, 296, 309, 509, 786, 1118 |
| MaeII | ACGT | 3 cut(s) | 55, 483, 865 |
| MaeIII | GTNAC | 5 cut(s) | 56, 488, 539, 824, 1045 |
| MalI | GATC | 4 cut(s) | 617, 716, 1104, 1116 |
| MbiI | CCGCTC | 1 cut(s) | 106 |
| MboI | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| MboII | GAAGA | 8 cut(s) | 142, 446, 449, 479, 652, 867, 1049, 1112 |
| MhlI | GDGCHC | 2 cut(s) | 1018, 1033 |
| MlsI | TGGCCA | 1 cut(s) | 897 |
| MluCI | AATT | 3 cut(s) | 599, 622, 1041 |
| MluNI | TGGCCA | 1 cut(s) | 897 |
| MlyI | GAGTC | 6 cut(s) | 29, 135, 385, 485, 637, 974 |
| MmeI | TCCRAC | 1 cut(s) | 718 |
| Mox20I | TGGCCA | 1 cut(s) | 897 |
| Mph1103I | ATGCAT | 1 cut(s) | 985 |
| MscI | TGGCCA | 1 cut(s) | 897 |
| MseI | TTAA | 3 cut(s) | 585, 593, 944 |
| MslI | CAYNNNNRTG | 3 cut(s) | 402, 903, 933 |
| Msp20I | TGGCCA | 1 cut(s) | 897 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MvnI | CGCG | 9 cut(s) | 22, 65, 76, 100, 155, 171, 252, 276, 284 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 326, 347, 359, 368, 1058 |
| NdeI | CATATG | 1 cut(s) | 399 |
| NdeII | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| NlaIII | CATG | 4 cut(s) | 731, 767, 902, 987 |
| NlaIV | GGNNCC | 3 cut(s) | 159, 851, 910 |
| NmuCI | GTSAC | 4 cut(s) | 56, 488, 539, 1045 |
| NsiI | ATGCAT | 1 cut(s) | 985 |
| NspI | RCATGY | 1 cut(s) | 987 |
| PagI | TCATGA | 1 cut(s) | 727 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PfeI | GAWTC | 2 cut(s) | 407, 693 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1011 |
| PkrI | GCNGC | 3 cut(s) | 157, 173, 352 |
| PleI | GAGTC | 6 cut(s) | 29, 135, 385, 485, 637, 973 |
| PmaCI | CACGTG | 1 cut(s) | 56 |
| PmlI | CACGTG | 1 cut(s) | 56 |
| PpsI | GAGTC | 6 cut(s) | 29, 135, 385, 485, 637, 973 |
| Ppu21I | YACGTR | 1 cut(s) | 56 |
| Psp124BI | GAGCTC | 1 cut(s) | 1033 |
| PspCI | CACGTG | 1 cut(s) | 56 |
| PspN4I | GGNNCC | 3 cut(s) | 159, 851, 910 |
| PspPI | GGNCC | 1 cut(s) | 797 |
| PstI | CTGCAG | 1 cut(s) | 709 |
| RsaI | GTAC | 1 cut(s) | 93 |
| RsaNI | GTAC | 1 cut(s) | 92 |
| RseI | CAYNNNNRTG | 3 cut(s) | 402, 903, 933 |
| SacI | GAGCTC | 1 cut(s) | 1033 |
| SaqAI | TTAA | 3 cut(s) | 585, 593, 944 |
| SatI | GCNGC | 3 cut(s) | 156, 172, 351 |
| Sau3AI | GATC | 4 cut(s) | 615, 714, 1102, 1114 |
| Sau96I | GGNCC | 1 cut(s) | 797 |
| SchI | GAGTC | 6 cut(s) | 29, 135, 385, 485, 637, 974 |
| SduI | GDGCHC | 2 cut(s) | 1018, 1033 |
| SfaNI | GCATC | 2 cut(s) | 172, 970 |
| SfcI | CTRYAG | 1 cut(s) | 705 |
| SinI | GGWCC | 1 cut(s) | 797 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 402, 903, 933 |
| SpeI | ACTAGT | 1 cut(s) | 88 |
| Sse9I | AATT | 3 cut(s) | 599, 622, 1041 |
| SspI | AATATT | 1 cut(s) | 700 |
| SspMI | CTAG | 7 cut(s) | 89, 188, 296, 309, 509, 786, 1118 |
| SstI | GAGCTC | 1 cut(s) | 1033 |
| StyI | CCWWGG | 1 cut(s) | 308 |
| TaiI | ACGT | 3 cut(s) | 58, 486, 868 |
| TaqI | TCGA | 5 cut(s) | 139, 465, 626, 691, 991 |
| TasI | AATT | 3 cut(s) | 599, 622, 1041 |
| TauI | GCSGC | 2 cut(s) | 158, 174 |
| TfiI | GAWTC | 2 cut(s) | 407, 693 |
| Tru1I | TTAA | 3 cut(s) | 585, 593, 944 |
| Tru9I | TTAA | 3 cut(s) | 585, 593, 944 |
| TseFI | GTSAC | 4 cut(s) | 56, 488, 539, 1045 |
| TseI | GCWGC | 1 cut(s) | 350 |
| Tsp45I | GTSAC | 4 cut(s) | 56, 488, 539, 1045 |
| TspDTI | ATGAA | 5 cut(s) | 443, 447, 491, 716, 761 |
| TspGWI | ACGGA | 3 cut(s) | 476, 727, 862 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1011 |
| VpaK11BI | GGWCC | 1 cut(s) | 797 |
| XapI | RAATTY | 2 cut(s) | 599, 622 |
| XbaI | TCTAGA | 2 cut(s) | 785, 1117 |
| XceI | RCATGY | 1 cut(s) | 987 |
| XmaJI | CCTAGG | 1 cut(s) | 308 |
| XspI | CTAG | 7 cut(s) | 89, 188, 296, 309, 509, 786, 1118 |
| Zsp2I | ATGCAT | 1 cut(s) | 985 |