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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 892 |
| AccB1I | GGYRCC | 3 cut(s) | 721, 892, 1895 |
| AccI | GTMKAC | 1 cut(s) | 808 |
| AccII | CGCG | 2 cut(s) | 275, 1527 |
| AclWI | GGATC | 7 cut(s) | 196, 245, 966, 1056, 1667, 2053, 2252 |
| AcoI | YGGCCR | 1 cut(s) | 1818 |
| AcsI | RAATTY | 3 cut(s) | 1017, 1244, 1544 |
| AcuI | CTGAAG | 2 cut(s) | 722, 1797 |
| AcyI | GRCGYC | 2 cut(s) | 1977, 2306 |
| AfaI | GTAC | 3 cut(s) | 281, 712, 894 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 737, 981, 1921, 1925, 2288 |
| AflIII | ACRYGT | 2 cut(s) | 756, 811 |
| AgeI | ACCGGT | 2 cut(s) | 651, 981 |
| AgsI | TTSAA | 5 cut(s) | 382, 692, 1492, 1858, 2215 |
| AjiI | CACGTC | 4 cut(s) | 1098, 1137, 1161, 1327 |
| AjnI | CCWGG | 9 cut(s) | 257, 1044, 1177, 1296, 1320, 1452, 1981, 2029, 2102 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 335, 348, 367, 380, 2207, 2239 |
| Alw21I | GWGCWC | 2 cut(s) | 93, 1680 |
| Alw26I | GTCTC | 6 cut(s) | 395, 540, 671, 1612, 2054, 2271 |
| AlwI | GGATC | 7 cut(s) | 196, 245, 966, 1056, 1667, 2053, 2252 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 33, 1118, 1178 |
| Ama87I | CYCGRG | 1 cut(s) | 1310 |
| AoxI | GGCC | 8 cut(s) | 260, 834, 1086, 1284, 1818, 2172, 2178, 2201 |
| ApeKI | GCWGC | 4 cut(s) | 426, 1031, 1370, 2091 |
| ApoI | RAATTY | 3 cut(s) | 1017, 1244, 1544 |
| AsiGI | ACCGGT | 2 cut(s) | 651, 981 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 653, 1521, 2324 |
| Asp718I | GGTACC | 1 cut(s) | 892 |
| AspA2I | CCTAGG | 1 cut(s) | 1919 |
| AspLEI | GCGC | 1 cut(s) | 1864 |
| AspS9I | GGNCC | 4 cut(s) | 1086, 1147, 2179, 2202 |
| AsuC2I | CCSGG | 1 cut(s) | 2283 |
| AsuHPI | GGTGA | 7 cut(s) | 32, 326, 443, 597, 979, 1402, 1982 |
| AsuII | TTCGAA | 1 cut(s) | 823 |
| AvaI | CYCGRG | 1 cut(s) | 1310 |
| AvaII | GGWCC | 1 cut(s) | 1147 |
| AvrII | CCTAGG | 1 cut(s) | 1919 |
| BanI | GGYRCC | 3 cut(s) | 721, 892, 1895 |
| BanII | GRGCYC | 1 cut(s) | 1680 |
| BbsI | GAAGAC | 3 cut(s) | 221, 433, 1592 |
| Bbv12I | GWGCWC | 2 cut(s) | 93, 1680 |
| BbvI | GCAGC | 4 cut(s) | 438, 1043, 1382, 2078 |
| BccI | CCATC | 7 cut(s) | 581, 1283, 1406, 1458, 1612, 1886, 1919 |
| BceAI | ACGGC | 1 cut(s) | 754 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 41, 75 |
| BciT130I | CCWGG | 9 cut(s) | 259, 1046, 1179, 1298, 1322, 1454, 1983, 2031, 2104 |
| BciVI | GTATCC | 1 cut(s) | 1294 |
| BcnI | CCSGG | 1 cut(s) | 2283 |
| BcoDI | GTCTC | 6 cut(s) | 395, 540, 671, 1612, 2054, 2271 |
| BfaI | CTAG | 6 cut(s) | 674, 1052, 1236, 1317, 1920, 2187 |
| BfoI | RGCGCY | 1 cut(s) | 1865 |
| BfuI | GTATCC | 1 cut(s) | 1294 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1379 |
| BglII | AGATCT | 2 cut(s) | 595, 1742 |
| BisI | GCNGC | 6 cut(s) | 427, 1032, 1371, 1698, 1821, 2092 |
| BlnI | CCTAGG | 1 cut(s) | 1919 |
| BlsI | GCNGC | 6 cut(s) | 428, 1033, 1372, 1699, 1822, 2093 |
| Bme18I | GGWCC | 1 cut(s) | 1147 |
| BmeT110I | CYCGRG | 1 cut(s) | 1310 |
| BmgBI | CACGTC | 4 cut(s) | 1098, 1137, 1161, 1327 |
| BmgT120I | GGNCC | 4 cut(s) | 1086, 1147, 2179, 2202 |
| BmsI | GCATC | 5 cut(s) | 225, 775, 1124, 1285, 1558 |
| BoxI | GACNNNNGTC | 1 cut(s) | 741 |
| BpiI | GAAGAC | 3 cut(s) | 221, 433, 1592 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2143, 2175 |
| BpmI | CTGGAG | 1 cut(s) | 55 |
| Bpu14I | TTCGAA | 1 cut(s) | 823 |
| BpuEI | CTTGAG | 3 cut(s) | 446, 1265, 1332 |
| BpuMI | CCSGG | 1 cut(s) | 2283 |
| Bsa29I | ATCGAT | 2 cut(s) | 156, 588 |
| BsaBI | GATNNNNATC | 1 cut(s) | 594 |
| BsaHI | GRCGYC | 2 cut(s) | 1977, 2306 |
| BsaI | GGTCTC | 1 cut(s) | 2271 |
| BsaJI | CCNNGG | 7 cut(s) | 114, 1177, 1919, 1950, 1981, 2175, 2240 |
| BsaWI | WCCGGW | 2 cut(s) | 651, 981 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 790, 820 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 737, 981, 1921, 1925, 2288 |
| Bse118I | RCCGGY | 4 cut(s) | 651, 724, 883, 981 |
| Bse1I | ACTGG | 1 cut(s) | 1149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 594 |
| BseBI | CCWGG | 9 cut(s) | 259, 1046, 1179, 1298, 1322, 1454, 1983, 2031, 2104 |
| BseCI | ATCGAT | 2 cut(s) | 156, 588 |
| BseDI | CCNNGG | 7 cut(s) | 114, 1177, 1919, 1950, 1981, 2175, 2240 |
| BseGI | GGATG | 7 cut(s) | 913, 1197, 1270, 1401, 1428, 1930, 2224 |
| BseJI | GATNNNNATC | 1 cut(s) | 594 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 737, 981, 1921, 1925, 2288 |
| BseMII | CTCAG | 5 cut(s) | 492, 523, 629, 1872, 2321 |
| BseNI | ACTGG | 1 cut(s) | 1149 |
| BseRI | GAGGAG | 3 cut(s) | 464, 814, 1466 |
| BseXI | GCAGC | 4 cut(s) | 438, 1043, 1382, 2078 |
| BseYI | CCCAGC | 1 cut(s) | 762 |
| BsgI | GTGCAG | 1 cut(s) | 962 |
| Bsh1236I | CGCG | 2 cut(s) | 275, 1527 |
| BshFI | GGCC | 8 cut(s) | 262, 836, 1088, 1286, 1820, 2174, 2180, 2203 |
| BshNI | GGYRCC | 3 cut(s) | 721, 892, 1895 |
| BshTI | ACCGGT | 2 cut(s) | 651, 981 |
| BshVI | ATCGAT | 2 cut(s) | 156, 588 |
| BsiHKAI | GWGCWC | 2 cut(s) | 93, 1680 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1310 |
| BsiSI | CCGG | 7 cut(s) | 239, 652, 725, 731, 884, 982, 2282 |
| BslFI | GGGAC | 2 cut(s) | 745, 2317 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 737, 981, 1921, 1925, 2288 |
| BsmAI | GTCTC | 6 cut(s) | 395, 540, 671, 1612, 2054, 2271 |
| BsmBI | CGTCTC | 2 cut(s) | 395, 1612 |
| BsmFI | GGGAC | 2 cut(s) | 745, 2317 |
| BsmI | GAATGC | 2 cut(s) | 1699, 2196 |
| BsnI | GGCC | 8 cut(s) | 262, 836, 1088, 1286, 1820, 2174, 2180, 2203 |
| Bso31I | GGTCTC | 1 cut(s) | 2271 |
| BsoBI | CYCGRG | 1 cut(s) | 1310 |
| Bsp119I | TTCGAA | 1 cut(s) | 823 |
| Bsp1286I | GDGCHC | 2 cut(s) | 93, 1680 |
| Bsp19I | CCATGG | 3 cut(s) | 114, 1950, 2175 |
| BspANI | GGCC | 8 cut(s) | 262, 836, 1088, 1286, 1820, 2174, 2180, 2203 |
| BspCNI | CTCAG | 5 cut(s) | 493, 522, 630, 1873, 2322 |
| BspDI | ATCGAT | 2 cut(s) | 156, 588 |
| BspFNI | CGCG | 2 cut(s) | 275, 1527 |
| BspHI | TCATGA | 2 cut(s) | 1672, 2269 |
| BspPI | GGATC | 7 cut(s) | 196, 245, 966, 1056, 1667, 2053, 2252 |
| BspQI | GCTCTTC | 1 cut(s) | 1041 |
| BspT104I | TTCGAA | 1 cut(s) | 823 |
| BspT107I | GGYRCC | 3 cut(s) | 721, 892, 1895 |
| BspTNI | GGTCTC | 1 cut(s) | 2271 |
| BsrFI | RCCGGY | 4 cut(s) | 651, 724, 883, 981 |
| BsrI | ACTGG | 1 cut(s) | 1149 |
| BssAI | RCCGGY | 4 cut(s) | 651, 724, 883, 981 |
| BssECI | CCNNGG | 7 cut(s) | 114, 1177, 1919, 1950, 1981, 2175, 2240 |
| BssNI | GRCGYC | 2 cut(s) | 1977, 2306 |
| BssT1I | CCWWGG | 5 cut(s) | 114, 1919, 1950, 2175, 2240 |
| Bst2UI | CCWGG | 9 cut(s) | 259, 1046, 1179, 1298, 1322, 1454, 1983, 2031, 2104 |
| Bst4CI | ACNGT | 4 cut(s) | 29, 918, 1110, 1336 |
| Bst6I | CTCTTC | 4 cut(s) | 237, 482, 1041, 1773 |
| BstACI | GRCGYC | 2 cut(s) | 1977, 2306 |
| BstBI | TTCGAA | 1 cut(s) | 823 |
| BstC8I | GCNNGC | 1 cut(s) | 1344 |
| BstDEI | CTNAG | 9 cut(s) | 373, 501, 509, 638, 954, 1375, 1833, 1881, 2330 |
| BstDSI | CCRYGG | 3 cut(s) | 114, 1950, 2175 |
| BstF5I | GGATG | 7 cut(s) | 913, 1197, 1270, 1401, 1428, 1930, 2224 |
| BstFNI | CGCG | 2 cut(s) | 275, 1527 |
| BstH2I | RGCGCY | 1 cut(s) | 1865 |
| BstHHI | GCGC | 1 cut(s) | 1864 |
| BstMAI | GTCTC | 6 cut(s) | 395, 540, 671, 1612, 2054, 2271 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 842, 1139, 1163, 1172, 1358, 1367, 1379, 2171, 2200 |
| BstNI | CCWGG | 9 cut(s) | 259, 1046, 1179, 1298, 1322, 1454, 1983, 2031, 2104 |
| BstNSI | RCATGY | 3 cut(s) | 18, 760, 815 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 741 |
| BstUI | CGCG | 2 cut(s) | 275, 1527 |
| BstV1I | GCAGC | 4 cut(s) | 438, 1043, 1382, 2078 |
| BstV2I | GAAGAC | 3 cut(s) | 221, 433, 1592 |
| BstX2I | RGATCY | 4 cut(s) | 595, 971, 1048, 1742 |
| BstYI | RGATCY | 4 cut(s) | 595, 971, 1048, 1742 |
| Bsu15I | ATCGAT | 2 cut(s) | 156, 588 |
| BsuI | GTATCC | 1 cut(s) | 1294 |
| BsuRI | GGCC | 8 cut(s) | 262, 836, 1088, 1286, 1820, 2174, 2180, 2203 |
| BsuTUI | ATCGAT | 2 cut(s) | 156, 588 |
| BtgI | CCRYGG | 3 cut(s) | 114, 1950, 2175 |
| BtgZI | GCGATG | 2 cut(s) | 320, 1586 |
| BtrI | CACGTC | 4 cut(s) | 1098, 1137, 1161, 1327 |
| BtsCI | GGATG | 7 cut(s) | 913, 1197, 1270, 1401, 1428, 1930, 2224 |
| BtsI | GCAGTG | 1 cut(s) | 1152 |
| BtsIMutI | CAGTG | 3 cut(s) | 34, 1142, 1152 |
| Cac8I | GCNNGC | 1 cut(s) | 1344 |
| CaiI | CAGNNNCTG | 3 cut(s) | 33, 1118, 1178 |
| CciI | TCATGA | 2 cut(s) | 1672, 2269 |
| CfoI | GCGC | 1 cut(s) | 1864 |
| Cfr10I | RCCGGY | 4 cut(s) | 651, 724, 883, 981 |
| Cfr13I | GGNCC | 4 cut(s) | 1086, 1147, 2179, 2202 |
| ClaI | ATCGAT | 2 cut(s) | 156, 588 |
| CseI | GACGC | 2 cut(s) | 1985, 2314 |
| Csp6I | GTAC | 3 cut(s) | 280, 711, 893 |
| CspAI | ACCGGT | 2 cut(s) | 651, 981 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2134, 2169 |
| CviQI | GTAC | 3 cut(s) | 280, 711, 893 |
| DdeI | CTNAG | 9 cut(s) | 373, 501, 509, 638, 954, 1375, 1833, 1881, 2330 |
| EaeI | YGGCCR | 1 cut(s) | 1818 |
| Eam1104I | CTCTTC | 4 cut(s) | 237, 482, 1041, 1773 |
| EarI | CTCTTC | 4 cut(s) | 237, 482, 1041, 1773 |
| EciI | GGCGGA | 2 cut(s) | 902, 1204 |
| Ecl136II | GAGCTC | 1 cut(s) | 1678 |
| Eco130I | CCWWGG | 5 cut(s) | 114, 1919, 1950, 2175, 2240 |
| Eco24I | GRGCYC | 1 cut(s) | 1680 |
| Eco31I | GGTCTC | 1 cut(s) | 2271 |
| Eco32I | GATATC | 1 cut(s) | 685 |
| Eco47I | GGWCC | 1 cut(s) | 1147 |
| Eco53kI | GAGCTC | 1 cut(s) | 1678 |
| Eco57I | CTGAAG | 2 cut(s) | 722, 1797 |
| Eco88I | CYCGRG | 1 cut(s) | 1310 |
| EcoICRI | GAGCTC | 1 cut(s) | 1678 |
| EcoRI | GAATTC | 1 cut(s) | 1544 |
| EcoRII | CCWGG | 9 cut(s) | 257, 1044, 1177, 1296, 1320, 1452, 1981, 2029, 2102 |
| EcoRV | GATATC | 1 cut(s) | 685 |
| EcoT14I | CCWWGG | 5 cut(s) | 114, 1919, 1950, 2175, 2240 |
| EcoT22I | ATGCAT | 1 cut(s) | 790 |
| EcoT38I | GRGCYC | 1 cut(s) | 1680 |
| ErhI | CCWWGG | 5 cut(s) | 114, 1919, 1950, 2175, 2240 |
| Esp3I | CGTCTC | 2 cut(s) | 395, 1612 |
| FaqI | GGGAC | 2 cut(s) | 745, 2317 |
| FblI | GTMKAC | 1 cut(s) | 808 |
| Fnu4HI | GCNGC | 6 cut(s) | 427, 1032, 1371, 1698, 1821, 2092 |
| FokI | GGATG | 7 cut(s) | 920, 1204, 1277, 1388, 1415, 1937, 2231 |
| FriOI | GRGCYC | 1 cut(s) | 1680 |
| Fsp4HI | GCNGC | 6 cut(s) | 427, 1032, 1371, 1698, 1821, 2092 |
| FspBI | CTAG | 6 cut(s) | 674, 1052, 1236, 1317, 1920, 2187 |
| GlaI | GCGC | 1 cut(s) | 1863 |
| GluI | GCNGC | 6 cut(s) | 427, 1032, 1371, 1698, 1821, 2092 |
| GsaI | CCCAGC | 1 cut(s) | 766 |
| GsuI | CTGGAG | 1 cut(s) | 55 |
| HaeII | RGCGCY | 1 cut(s) | 1865 |
| HaeIII | GGCC | 8 cut(s) | 262, 836, 1088, 1286, 1820, 2174, 2180, 2203 |
| HapII | CCGG | 7 cut(s) | 239, 652, 725, 731, 884, 982, 2282 |
| HgaI | GACGC | 2 cut(s) | 1985, 2314 |
| HhaI | GCGC | 1 cut(s) | 1864 |
| Hin1I | GRCGYC | 2 cut(s) | 1977, 2306 |
| Hin6I | GCGC | 1 cut(s) | 1862 |
| HinP1I | GCGC | 1 cut(s) | 1862 |
| HindIII | AAGCTT | 1 cut(s) | 1350 |
| HpaII | CCGG | 7 cut(s) | 239, 652, 725, 731, 884, 982, 2282 |
| HphI | GGTGA | 7 cut(s) | 32, 326, 443, 597, 979, 1402, 1982 |
| Hpy166II | GTNNAC | 4 cut(s) | 809, 987, 1270, 1909 |
| Hpy8I | GTNNAC | 4 cut(s) | 809, 987, 1270, 1909 |
| Hpy99I | CGWCG | 1 cut(s) | 922 |
| HpyAV | CCTTC | 8 cut(s) | 295, 304, 698, 826, 1003, 1609, 2101, 2209 |
| HpyCH4III | ACNGT | 4 cut(s) | 29, 918, 1110, 1336 |
| HpyCH4IV | ACGT | 6 cut(s) | 828, 1097, 1136, 1160, 1326, 2314 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 842, 1139, 1163, 1172, 1358, 1367, 1379, 2171, 2200 |
| HpyF3I | CTNAG | 9 cut(s) | 373, 501, 509, 638, 954, 1375, 1833, 1881, 2330 |
| HpySE526I | ACGT | 6 cut(s) | 828, 1097, 1136, 1160, 1326, 2314 |
| Hsp92I | GRCGYC | 2 cut(s) | 1977, 2306 |
| HspAI | GCGC | 1 cut(s) | 1862 |
| KpnI | GGTACC | 1 cut(s) | 896 |
| LguI | GCTCTTC | 1 cut(s) | 1041 |
| LmnI | GCTCC | 4 cut(s) | 471, 477, 2118, 2135 |
| Lsp1109I | GCAGC | 4 cut(s) | 438, 1043, 1382, 2078 |
| LweI | GCATC | 5 cut(s) | 225, 775, 1124, 1285, 1558 |
| MaeI | CTAG | 6 cut(s) | 674, 1052, 1236, 1317, 1920, 2187 |
| MaeII | ACGT | 6 cut(s) | 828, 1097, 1136, 1160, 1326, 2314 |
| MaeIII | GTNAC | 6 cut(s) | 38, 1433, 1621, 1747, 2071, 2166 |
| MfeI | CAATTG | 1 cut(s) | 1006 |
| MflI | RGATCY | 4 cut(s) | 595, 971, 1048, 1742 |
| MhlI | GDGCHC | 2 cut(s) | 93, 1680 |
| MlyI | GAGTC | 8 cut(s) | 46, 491, 1405, 1430, 1582, 1844, 1846, 1886 |
| MmeI | TCCRAC | 1 cut(s) | 1049 |
| Mph1103I | ATGCAT | 1 cut(s) | 790 |
| MroXI | GAANNNNTTC | 3 cut(s) | 653, 1521, 2324 |
| MseI | TTAA | 2 cut(s) | 1197, 1530 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1406, 1721, 1845, 1968, 1971 |
| MspA1I | CMGCKG | 2 cut(s) | 429, 1700 |
| MspI | CCGG | 7 cut(s) | 239, 652, 725, 731, 884, 982, 2282 |
| MunI | CAATTG | 1 cut(s) | 1006 |
| Mva1269I | GAATGC | 2 cut(s) | 1699, 2196 |
| MvaI | CCWGG | 9 cut(s) | 259, 1046, 1179, 1298, 1322, 1454, 1983, 2031, 2104 |
| MvnI | CGCG | 2 cut(s) | 275, 1527 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 842, 1139, 1163, 1172, 1358, 1367, 1379, 2171, 2200 |
| NciI | CCSGG | 1 cut(s) | 2283 |
| NcoI | CCATGG | 3 cut(s) | 114, 1950, 2175 |
| NmuCI | GTSAC | 3 cut(s) | 38, 1433, 2071 |
| NsiI | ATGCAT | 1 cut(s) | 790 |
| NspI | RCATGY | 3 cut(s) | 18, 760, 815 |
| NspV | TTCGAA | 1 cut(s) | 823 |
| PaeR7I | CTCGAG | 1 cut(s) | 1310 |
| PagI | TCATGA | 2 cut(s) | 1672, 2269 |
| PciI | ACATGT | 2 cut(s) | 756, 811 |
| PciSI | GCTCTTC | 1 cut(s) | 1041 |
| PctI | GAATGC | 2 cut(s) | 1699, 2196 |
| PdmI | GAANNNNTTC | 3 cut(s) | 653, 1521, 2324 |
| PfeI | GAWTC | 8 cut(s) | 602, 610, 874, 1056, 1293, 1306, 1638, 2275 |
| PfoI | TCCNGGA | 1 cut(s) | 1296 |
| PinAI | ACCGGT | 2 cut(s) | 651, 981 |
| PkrI | GCNGC | 6 cut(s) | 428, 1033, 1372, 1699, 1822, 2093 |
| PleI | GAGTC | 8 cut(s) | 45, 491, 1405, 1430, 1582, 1844, 1845, 1885 |
| PpsI | GAGTC | 8 cut(s) | 45, 491, 1405, 1430, 1582, 1844, 1845, 1885 |
| PscI | ACATGT | 2 cut(s) | 756, 811 |
| PshAI | GACNNNNGTC | 1 cut(s) | 741 |
| Psp124BI | GAGCTC | 1 cut(s) | 1680 |
| Psp6I | CCWGG | 9 cut(s) | 257, 1044, 1177, 1296, 1320, 1452, 1981, 2029, 2102 |
| PspFI | CCCAGC | 1 cut(s) | 762 |
| PspGI | CCWGG | 9 cut(s) | 257, 1044, 1177, 1296, 1320, 1452, 1981, 2029, 2102 |
| PspPI | GGNCC | 4 cut(s) | 1086, 1147, 2179, 2202 |
| PstNI | CAGNNNCTG | 3 cut(s) | 33, 1118, 1178 |
| PsuI | RGATCY | 4 cut(s) | 595, 971, 1048, 1742 |
| RsaI | GTAC | 3 cut(s) | 281, 712, 894 |
| RsaNI | GTAC | 3 cut(s) | 280, 711, 893 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1406, 1721, 1845, 1968, 1971 |
| SacI | GAGCTC | 1 cut(s) | 1680 |
| SapI | GCTCTTC | 1 cut(s) | 1041 |
| SaqAI | TTAA | 2 cut(s) | 1197, 1530 |
| SatI | GCNGC | 6 cut(s) | 427, 1032, 1371, 1698, 1821, 2092 |
| Sau96I | GGNCC | 4 cut(s) | 1086, 1147, 2179, 2202 |
| SchI | GAGTC | 8 cut(s) | 46, 491, 1405, 1430, 1582, 1844, 1846, 1886 |
| SduI | GDGCHC | 2 cut(s) | 93, 1680 |
| SfaNI | GCATC | 5 cut(s) | 225, 775, 1124, 1285, 1558 |
| Sfr274I | CTCGAG | 1 cut(s) | 1310 |
| SfuI | TTCGAA | 1 cut(s) | 823 |
| SinI | GGWCC | 1 cut(s) | 1147 |
| SlaI | CTCGAG | 1 cut(s) | 1310 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1406, 1721, 1845, 1968, 1971 |
| SmlI | CTYRAG | 4 cut(s) | 461, 1280, 1310, 1347 |
| SmoI | CTYRAG | 4 cut(s) | 461, 1280, 1310, 1347 |
| SspMI | CTAG | 6 cut(s) | 674, 1052, 1236, 1317, 1920, 2187 |
| SstI | GAGCTC | 1 cut(s) | 1680 |
| StyI | CCWWGG | 5 cut(s) | 114, 1919, 1950, 2175, 2240 |
| TaaI | ACNGT | 4 cut(s) | 29, 918, 1110, 1336 |
| TaiI | ACGT | 6 cut(s) | 831, 1100, 1139, 1163, 1329, 2317 |
| TaqII | GACCGA | 2 cut(s) | 1158, 2253 |
| TatI | WGTACW | 2 cut(s) | 279, 710 |
| TauI | GCSGC | 2 cut(s) | 1700, 1823 |
| TfiI | GAWTC | 8 cut(s) | 602, 610, 874, 1056, 1293, 1306, 1638, 2275 |
| Tru1I | TTAA | 2 cut(s) | 1197, 1530 |
| Tru9I | TTAA | 2 cut(s) | 1197, 1530 |
| TscAI | CASTG | 3 cut(s) | 34, 1149, 1159 |
| TseFI | GTSAC | 3 cut(s) | 38, 1433, 2071 |
| TseI | GCWGC | 4 cut(s) | 426, 1031, 1370, 2091 |
| Tsp45I | GTSAC | 3 cut(s) | 38, 1433, 2071 |
| TspDTI | ATGAA | 7 cut(s) | 239, 323, 356, 924, 1661, 1706, 1959 |
| TspGWI | ACGGA | 4 cut(s) | 1421, 1672, 1785, 1894 |
| TspRI | CASTG | 3 cut(s) | 34, 1149, 1159 |
| VpaK11BI | GGWCC | 1 cut(s) | 1147 |
| XapI | RAATTY | 3 cut(s) | 1017, 1244, 1544 |
| XbaI | TCTAGA | 1 cut(s) | 673 |
| XceI | RCATGY | 3 cut(s) | 18, 760, 815 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1141, 1922, 2129 |
| XhoI | CTCGAG | 1 cut(s) | 1310 |
| XmaJI | CCTAGG | 1 cut(s) | 1919 |
| XmiI | GTMKAC | 1 cut(s) | 808 |
| XmnI | GAANNNNTTC | 3 cut(s) | 653, 1521, 2324 |
| XspI | CTAG | 6 cut(s) | 674, 1052, 1236, 1317, 1920, 2187 |
| Zsp2I | ATGCAT | 1 cut(s) | 790 |