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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 568 |
| AccII | CGCG | 1 cut(s) | 396 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 2 cut(s) | 322, 348 |
| AcoI | YGGCCR | 1 cut(s) | 555 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AcyI | GRCGYC | 1 cut(s) | 569 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AluBI | AGCT | 1 cut(s) | 289 |
| AluI | AGCT | 1 cut(s) | 289 |
| Alw26I | GTCTC | 2 cut(s) | 37, 223 |
| AlwI | GGATC | 2 cut(s) | 322, 348 |
| Ama87I | CYCGRG | 1 cut(s) | 16 |
| AoxI | GGCC | 2 cut(s) | 410, 555 |
| ApaI | GGGCCC | 1 cut(s) | 414 |
| ApeKI | GCWGC | 1 cut(s) | 545 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| AspLEI | GCGC | 3 cut(s) | 398, 550, 571 |
| AspS9I | GGNCC | 3 cut(s) | 410, 411, 458 |
| AvaI | CYCGRG | 1 cut(s) | 16 |
| AvaII | GGWCC | 1 cut(s) | 458 |
| BaeGI | GKGCMC | 1 cut(s) | 414 |
| BalI | TGGCCA | 1 cut(s) | 557 |
| BanI | GGYRCC | 1 cut(s) | 568 |
| BanII | GRGCYC | 1 cut(s) | 414 |
| BbsI | GAAGAC | 2 cut(s) | 18, 203 |
| BbvI | GCAGC | 1 cut(s) | 557 |
| BccI | CCATC | 2 cut(s) | 87, 223 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 242, 276 |
| BciVI | GTATCC | 1 cut(s) | 433 |
| BcoDI | GTCTC | 2 cut(s) | 37, 223 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfoI | RGCGCY | 2 cut(s) | 551, 572 |
| BfuI | GTATCC | 1 cut(s) | 433 |
| BisI | GCNGC | 1 cut(s) | 546 |
| BlsI | GCNGC | 1 cut(s) | 547 |
| Bme18I | GGWCC | 1 cut(s) | 458 |
| BmeT110I | CYCGRG | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 3 cut(s) | 410, 411, 458 |
| BmiI | GGNNCC | 3 cut(s) | 412, 413, 570 |
| BpiI | GAAGAC | 2 cut(s) | 18, 203 |
| Bsa29I | ATCGAT | 1 cut(s) | 252 |
| BsaHI | GRCGYC | 1 cut(s) | 569 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 357 |
| BseCI | ATCGAT | 1 cut(s) | 252 |
| BseDI | CCNNGG | 1 cut(s) | 357 |
| BseSI | GKGCMC | 1 cut(s) | 414 |
| BseXI | GCAGC | 1 cut(s) | 557 |
| Bsh1236I | CGCG | 1 cut(s) | 396 |
| BshFI | GGCC | 2 cut(s) | 412, 557 |
| BshNI | GGYRCC | 1 cut(s) | 568 |
| BshVI | ATCGAT | 1 cut(s) | 252 |
| BsiHKCI | CYCGRG | 1 cut(s) | 16 |
| BsmAI | GTCTC | 2 cut(s) | 37, 223 |
| BsnI | GGCC | 2 cut(s) | 412, 557 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| BsoBI | CYCGRG | 1 cut(s) | 16 |
| Bsp120I | GGGCCC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 414 |
| Bsp143I | GATC | 4 cut(s) | 171, 270, 327, 353 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 2 cut(s) | 412, 557 |
| BspDI | ATCGAT | 1 cut(s) | 252 |
| BspFNI | CGCG | 1 cut(s) | 396 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 3 cut(s) | 412, 413, 570 |
| BspMAI | CTGCAG | 1 cut(s) | 265 |
| BspPI | GGATC | 2 cut(s) | 322, 348 |
| BspT107I | GGYRCC | 1 cut(s) | 568 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 357 |
| BssMI | GATC | 4 cut(s) | 171, 270, 327, 353 |
| BssNI | GRCGYC | 1 cut(s) | 569 |
| Bst6I | CTCTTC | 1 cut(s) | 511 |
| BstACI | GRCGYC | 1 cut(s) | 569 |
| BstDEI | CTNAG | 4 cut(s) | 237, 402, 434, 581 |
| BstDSI | CCRYGG | 1 cut(s) | 357 |
| BstFNI | CGCG | 1 cut(s) | 396 |
| BstH2I | RGCGCY | 2 cut(s) | 551, 572 |
| BstHHI | GCGC | 3 cut(s) | 398, 550, 571 |
| BstKTI | GATC | 4 cut(s) | 174, 273, 330, 356 |
| BstMAI | GTCTC | 2 cut(s) | 37, 223 |
| BstMBI | GATC | 4 cut(s) | 171, 270, 327, 353 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 554 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstSLI | GKGCMC | 1 cut(s) | 414 |
| BstUI | CGCG | 1 cut(s) | 396 |
| BstV1I | GCAGC | 1 cut(s) | 557 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 203 |
| BstX2I | RGATCY | 2 cut(s) | 327, 353 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 565 |
| BstYI | RGATCY | 2 cut(s) | 327, 353 |
| Bsu15I | ATCGAT | 1 cut(s) | 252 |
| BsuI | GTATCC | 1 cut(s) | 433 |
| BsuRI | GGCC | 2 cut(s) | 412, 557 |
| BsuTUI | ATCGAT | 1 cut(s) | 252 |
| BtgI | CCRYGG | 1 cut(s) | 357 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 3 cut(s) | 398, 550, 571 |
| Cfr13I | GGNCC | 3 cut(s) | 410, 411, 458 |
| ClaI | ATCGAT | 1 cut(s) | 252 |
| CviAII | CATG | 4 cut(s) | 284, 320, 527, 559 |
| CviJI | RGCY | 6 cut(s) | 25, 102, 289, 412, 557, 587 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 102, 289, 412, 557, 587 |
| DdeI | CTNAG | 4 cut(s) | 237, 402, 434, 581 |
| DinI | GGCGCC | 1 cut(s) | 570 |
| DpnI | GATC | 4 cut(s) | 173, 272, 329, 355 |
| DpnII | GATC | 4 cut(s) | 171, 270, 327, 353 |
| EaeI | YGGCCR | 1 cut(s) | 555 |
| Eam1104I | CTCTTC | 1 cut(s) | 511 |
| EarI | CTCTTC | 1 cut(s) | 511 |
| Eco24I | GRGCYC | 1 cut(s) | 414 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 458 |
| Eco88I | CYCGRG | 1 cut(s) | 16 |
| EcoO109I | RGGNCCY | 2 cut(s) | 410, 411 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoT38I | GRGCYC | 1 cut(s) | 414 |
| EgeI | GGCGCC | 1 cut(s) | 570 |
| EheI | GGCGCC | 1 cut(s) | 570 |
| FaeI | CATG | 4 cut(s) | 287, 323, 530, 562 |
| FatI | CATG | 4 cut(s) | 283, 319, 526, 558 |
| Fnu4HI | GCNGC | 1 cut(s) | 546 |
| FriOI | GRGCYC | 1 cut(s) | 414 |
| Fsp4HI | GCNGC | 1 cut(s) | 546 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 3 cut(s) | 397, 549, 570 |
| GluI | GCNGC | 1 cut(s) | 546 |
| HaeII | RGCGCY | 2 cut(s) | 551, 572 |
| HaeIII | GGCC | 2 cut(s) | 412, 557 |
| HhaI | GCGC | 3 cut(s) | 398, 550, 571 |
| Hin1I | GRCGYC | 1 cut(s) | 569 |
| Hin1II | CATG | 4 cut(s) | 287, 323, 530, 562 |
| Hin6I | GCGC | 3 cut(s) | 396, 548, 569 |
| HinP1I | GCGC | 3 cut(s) | 396, 548, 569 |
| HincII | GTYRAC | 1 cut(s) | 524 |
| HindII | GTYRAC | 1 cut(s) | 524 |
| HinfI | GANTC | 4 cut(s) | 65, 199, 249, 380 |
| Hpy166II | GTNNAC | 1 cut(s) | 524 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 284, 377, 447 |
| Hpy8I | GTNNAC | 1 cut(s) | 524 |
| HpyAV | CCTTC | 3 cut(s) | 15, 220, 476 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 451 |
| HpyCH4V | TGCA | 3 cut(s) | 138, 224, 263 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 554 |
| HpyF3I | CTNAG | 4 cut(s) | 237, 402, 434, 581 |
| HpySE526I | ACGT | 2 cut(s) | 57, 451 |
| Hsp92I | GRCGYC | 1 cut(s) | 569 |
| Hsp92II | CATG | 4 cut(s) | 287, 323, 530, 562 |
| HspAI | GCGC | 3 cut(s) | 396, 548, 569 |
| KasI | GGCGCC | 1 cut(s) | 568 |
| Kzo9I | GATC | 4 cut(s) | 171, 270, 327, 353 |
| LpnPI | CCDG | 4 cut(s) | 249, 362, 432, 539 |
| Lsp1109I | GCAGC | 1 cut(s) | 557 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 2 cut(s) | 57, 451 |
| MaeIII | GTNAC | 3 cut(s) | 62, 256, 485 |
| MalI | GATC | 4 cut(s) | 173, 272, 329, 355 |
| MboI | GATC | 4 cut(s) | 171, 270, 327, 353 |
| MboII | GAAGA | 6 cut(s) | 20, 23, 140, 208, 349, 528 |
| MflI | RGATCY | 2 cut(s) | 327, 353 |
| MhlI | GDGCHC | 1 cut(s) | 414 |
| MlsI | TGGCCA | 1 cut(s) | 557 |
| MluCI | AATT | 3 cut(s) | 155, 346, 385 |
| MluNI | TGGCCA | 1 cut(s) | 557 |
| Mly113I | GGCGCC | 1 cut(s) | 569 |
| MlyI | GAGTC | 2 cut(s) | 59, 193 |
| MnlI | CCTC | 6 cut(s) | 113, 401, 409, 512, 532, 561 |
| Mox20I | TGGCCA | 1 cut(s) | 557 |
| MscI | TGGCCA | 1 cut(s) | 557 |
| MseI | TTAA | 2 cut(s) | 141, 149 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 563 |
| Msp20I | TGGCCA | 1 cut(s) | 557 |
| MvnI | CGCG | 1 cut(s) | 396 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 554 |
| NarI | GGCGCC | 1 cut(s) | 569 |
| NdeII | GATC | 4 cut(s) | 171, 270, 327, 353 |
| NlaIII | CATG | 4 cut(s) | 287, 323, 530, 562 |
| NlaIV | GGNNCC | 3 cut(s) | 412, 413, 570 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PfeI | GAWTC | 2 cut(s) | 249, 380 |
| PkrI | GCNGC | 1 cut(s) | 547 |
| PleI | GAGTC | 2 cut(s) | 59, 193 |
| PluTI | GGCGCC | 1 cut(s) | 572 |
| PpsI | GAGTC | 2 cut(s) | 59, 193 |
| PspN4I | GGNNCC | 3 cut(s) | 412, 413, 570 |
| PspOMI | GGGCCC | 1 cut(s) | 410 |
| PspPI | GGNCC | 3 cut(s) | 410, 411, 458 |
| PstI | CTGCAG | 1 cut(s) | 265 |
| PsuI | RGATCY | 2 cut(s) | 327, 353 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 563 |
| SaqAI | TTAA | 2 cut(s) | 141, 149 |
| SatI | GCNGC | 1 cut(s) | 546 |
| Sau3AI | GATC | 4 cut(s) | 171, 270, 327, 353 |
| Sau96I | GGNCC | 3 cut(s) | 410, 411, 458 |
| SchI | GAGTC | 2 cut(s) | 59, 193 |
| SduI | GDGCHC | 1 cut(s) | 414 |
| SetI | ASST | 9 cut(s) | 60, 84, 212, 281, 291, 301, 454, 487, 523 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SfoI | GGCGCC | 1 cut(s) | 570 |
| SinI | GGWCC | 1 cut(s) | 458 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 563 |
| Sse9I | AATT | 3 cut(s) | 155, 346, 385 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 1 cut(s) | 568 |
| SspMI | CTAG | 1 cut(s) | 83 |
| TaiI | ACGT | 2 cut(s) | 60, 454 |
| TaqI | TCGA | 3 cut(s) | 39, 247, 252 |
| TasI | AATT | 3 cut(s) | 155, 346, 385 |
| TfiI | GAWTC | 2 cut(s) | 249, 380 |
| Tru1I | TTAA | 2 cut(s) | 141, 149 |
| Tru9I | TTAA | 2 cut(s) | 141, 149 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 545 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 57, 272, 317 |
| TspGWI | ACGGA | 2 cut(s) | 50, 346 |
| VpaK11BI | GGWCC | 1 cut(s) | 458 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XspI | CTAG | 1 cut(s) | 83 |