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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 239 |
| AclWI | GGATC | 1 cut(s) | 110 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 3 cut(s) | 112, 254, 384 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| AflII | CTTAAG | 1 cut(s) | 106 |
| AgsI | TTSAA | 2 cut(s) | 167, 376 |
| AluBI | AGCT | 5 cut(s) | 24, 155, 179, 200, 357 |
| AluI | AGCT | 5 cut(s) | 24, 155, 179, 200, 357 |
| Alw26I | GTCTC | 2 cut(s) | 32, 496 |
| AlwI | GGATC | 1 cut(s) | 110 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| ApeKI | GCWGC | 3 cut(s) | 155, 158, 298 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 81, 241 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BbvI | GCAGC | 3 cut(s) | 142, 145, 310 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 418, 496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 341, 375 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 496 |
| BfaI | CTAG | 2 cut(s) | 35, 537 |
| BfrI | CTTAAG | 1 cut(s) | 106 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 299 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 300 |
| BmcAI | AGTACT | 1 cut(s) | 112 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 3 cut(s) | 142, 145, 310 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| BsmAI | GTCTC | 2 cut(s) | 32, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp143I | GATC | 1 cut(s) | 102 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspHI | TCATGA | 1 cut(s) | 216 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 1 cut(s) | 110 |
| BspTI | CTTAAG | 1 cut(s) | 106 |
| BssMI | GATC | 1 cut(s) | 102 |
| BstAFI | CTTAAG | 1 cut(s) | 106 |
| BstDEI | CTNAG | 1 cut(s) | 337 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 2 cut(s) | 81, 241 |
| BstKTI | GATC | 1 cut(s) | 105 |
| BstMAI | GTCTC | 2 cut(s) | 32, 496 |
| BstMBI | GATC | 1 cut(s) | 102 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 3 cut(s) | 142, 145, 310 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| CciI | TCATGA | 1 cut(s) | 216 |
| CfoI | GCGC | 2 cut(s) | 81, 241 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 3 cut(s) | 111, 253, 383 |
| CviAII | CATG | 3 cut(s) | 136, 217, 229 |
| CviJI | RGCY | 9 cut(s) | 24, 95, 124, 155, 179, 200, 206, 357, 509 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 95, 124, 155, 179, 200, 206, 357, 509 |
| CviQI | GTAC | 3 cut(s) | 111, 253, 383 |
| DdeI | CTNAG | 1 cut(s) | 337 |
| DpnI | GATC | 1 cut(s) | 104 |
| DpnII | GATC | 1 cut(s) | 102 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 139, 220, 232 |
| FaiI | YATR | 9 cut(s) | 137, 218, 230, 283, 354, 367, 411, 455, 553 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 8, 40, 532 |
| FatI | CATG | 3 cut(s) | 135, 216, 228 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| FspBI | CTAG | 2 cut(s) | 35, 537 |
| GlaI | GCGC | 2 cut(s) | 80, 240 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 299 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HgaI | GACGC | 1 cut(s) | 245 |
| HhaI | GCGC | 2 cut(s) | 81, 241 |
| Hin1II | CATG | 3 cut(s) | 139, 220, 232 |
| Hin6I | GCGC | 2 cut(s) | 79, 239 |
| HinP1I | GCGC | 2 cut(s) | 79, 239 |
| HinfI | GANTC | 2 cut(s) | 320, 472 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 4 cut(s) | 131, 217, 244, 332 |
| HpyCH4IV | ACGT | 1 cut(s) | 312 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 1 cut(s) | 337 |
| HpySE526I | ACGT | 1 cut(s) | 312 |
| Hsp92II | CATG | 3 cut(s) | 139, 220, 232 |
| HspAI | GCGC | 2 cut(s) | 79, 239 |
| Kzo9I | GATC | 1 cut(s) | 102 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 6 cut(s) | 23, 30, 116, 257, 338, 345 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 145, 310 |
| MaeI | CTAG | 2 cut(s) | 35, 537 |
| MaeII | ACGT | 1 cut(s) | 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 308, 317 |
| MalI | GATC | 1 cut(s) | 104 |
| MboI | GATC | 1 cut(s) | 102 |
| MboII | GAAGA | 4 cut(s) | 179, 278, 475, 481 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MluCI | AATT | 2 cut(s) | 394, 428 |
| MlyI | GAGTC | 2 cut(s) | 314, 466 |
| MnlI | CCTC | 4 cut(s) | 156, 181, 256, 266 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 90, 107 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 452 |
| MspCI | CTTAAG | 1 cut(s) | 106 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NdeII | GATC | 1 cut(s) | 102 |
| NlaIII | CATG | 3 cut(s) | 139, 220, 232 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 1 cut(s) | 216 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 188 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 300 |
| PleI | GAGTC | 2 cut(s) | 314, 466 |
| PpsI | GAGTC | 2 cut(s) | 314, 466 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 3 cut(s) | 112, 254, 384 |
| RsaNI | GTAC | 3 cut(s) | 111, 253, 383 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 452 |
| SaqAI | TTAA | 2 cut(s) | 90, 107 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Sau3AI | GATC | 1 cut(s) | 102 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| ScaI | AGTACT | 1 cut(s) | 112 |
| SchI | GAGTC | 2 cut(s) | 314, 466 |
| SetI | ASST | 8 cut(s) | 12, 26, 157, 181, 202, 258, 315, 359 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 452 |
| SmlI | CTYRAG | 2 cut(s) | 106, 293 |
| SmoI | CTYRAG | 2 cut(s) | 106, 293 |
| Sse9I | AATT | 2 cut(s) | 394, 428 |
| SspMI | CTAG | 2 cut(s) | 35, 537 |
| TaiI | ACGT | 1 cut(s) | 315 |
| TaqI | TCGA | 1 cut(s) | 294 |
| TasI | AATT | 2 cut(s) | 394, 428 |
| TatI | WGTACW | 2 cut(s) | 110, 382 |
| Tru1I | TTAA | 2 cut(s) | 90, 107 |
| Tru9I | TTAA | 2 cut(s) | 90, 107 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 3 cut(s) | 155, 158, 298 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 210, 245, 398, 540 |
| TspGWI | ACGGA | 2 cut(s) | 59, 305 |
| TspRI | CASTG | 1 cut(s) | 454 |
| Vha464I | CTTAAG | 1 cut(s) | 106 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 35, 537 |
| ZrmI | AGTACT | 1 cut(s) | 112 |