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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 135 |
| Acc36I | ACCTGC | 1 cut(s) | 135 |
| AciI | CCGC | 3 cut(s) | 111, 340, 348 |
| AclWI | GGATC | 1 cut(s) | 420 |
| AcoI | YGGCCR | 5 cut(s) | 50, 180, 200, 451, 551 |
| AcsI | RAATTY | 1 cut(s) | 186 |
| AcuI | CTGAAG | 2 cut(s) | 78, 309 |
| AcvI | CACGTG | 1 cut(s) | 309 |
| AcyI | GRCGYC | 2 cut(s) | 209, 383 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 205, 438, 468 |
| AgeI | ACCGGT | 1 cut(s) | 226 |
| AgsI | TTSAA | 3 cut(s) | 28, 87, 191 |
| AjiI | CACGTC | 3 cut(s) | 366, 401, 422 |
| AluBI | AGCT | 1 cut(s) | 394 |
| AluI | AGCT | 1 cut(s) | 394 |
| AlwI | GGATC | 1 cut(s) | 420 |
| AoxI | GGCC | 5 cut(s) | 50, 180, 200, 451, 551 |
| ApeKI | GCWGC | 3 cut(s) | 130, 269, 394 |
| ApoI | RAATTY | 1 cut(s) | 186 |
| AsiGI | ACCGGT | 1 cut(s) | 226 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 23 |
| AspS9I | GGNCC | 1 cut(s) | 46 |
| AsuC2I | CCSGG | 3 cut(s) | 81, 152, 432 |
| AsuHPI | GGTGA | 1 cut(s) | 90 |
| AvaII | GGWCC | 1 cut(s) | 46 |
| BbrPI | CACGTG | 1 cut(s) | 309 |
| BbvI | GCAGC | 3 cut(s) | 142, 281, 381 |
| BccI | CCATC | 1 cut(s) | 562 |
| BceAI | ACGGC | 1 cut(s) | 466 |
| BcnI | CCSGG | 3 cut(s) | 81, 152, 432 |
| BfmI | CTRYAG | 2 cut(s) | 128, 522 |
| BfuAI | ACCTGC | 1 cut(s) | 135 |
| BisI | GCNGC | 6 cut(s) | 111, 131, 270, 340, 348, 395 |
| BlsI | GCNGC | 6 cut(s) | 112, 132, 271, 341, 349, 396 |
| Bme1390I | CCNGG | 3 cut(s) | 81, 152, 432 |
| Bme18I | GGWCC | 1 cut(s) | 46 |
| BmgBI | CACGTC | 3 cut(s) | 366, 401, 422 |
| BmgT120I | GGNCC | 1 cut(s) | 46 |
| BmiI | GGNNCC | 2 cut(s) | 156, 177 |
| BmrFI | CCNGG | 3 cut(s) | 81, 152, 432 |
| BmrI | ACTGGG | 1 cut(s) | 24 |
| BmsI | GCATC | 2 cut(s) | 142, 527 |
| BmuI | ACTGGG | 1 cut(s) | 24 |
| BpuMI | CCSGG | 3 cut(s) | 81, 152, 432 |
| BsaAI | YACGTR | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 2 cut(s) | 209, 383 |
| BsaJI | CCNNGG | 1 cut(s) | 430 |
| BsaWI | WCCGGW | 5 cut(s) | 43, 172, 226, 409, 503 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 205, 438, 468 |
| Bse118I | RCCGGY | 6 cut(s) | 48, 178, 198, 205, 226, 453 |
| Bse1I | ACTGG | 2 cut(s) | 19, 387 |
| BseDI | CCNNGG | 1 cut(s) | 430 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 205, 438, 468 |
| BseNI | ACTGG | 2 cut(s) | 19, 387 |
| BseX3I | CGGCCG | 1 cut(s) | 451 |
| BseXI | GCAGC | 3 cut(s) | 142, 281, 381 |
| BseYI | CCCAGC | 1 cut(s) | 300 |
| BsgI | GTGCAG | 2 cut(s) | 288, 331 |
| Bsh1285I | CGRYCG | 1 cut(s) | 454 |
| BshFI | GGCC | 5 cut(s) | 52, 182, 202, 453, 553 |
| BshTI | ACCGGT | 1 cut(s) | 226 |
| BsiEI | CGRYCG | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 205, 438, 468 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsnI | GGCC | 5 cut(s) | 52, 182, 202, 453, 553 |
| Bsp143I | GATC | 1 cut(s) | 412 |
| BspACI | CCGC | 3 cut(s) | 111, 340, 348 |
| BspANI | GGCC | 5 cut(s) | 52, 182, 202, 453, 553 |
| BspLI | GGNNCC | 2 cut(s) | 156, 177 |
| BspMAI | CTGCAG | 1 cut(s) | 132 |
| BspMI | ACCTGC | 1 cut(s) | 135 |
| BspPI | GGATC | 1 cut(s) | 420 |
| BsrFI | RCCGGY | 6 cut(s) | 48, 178, 198, 205, 226, 453 |
| BsrI | ACTGG | 2 cut(s) | 19, 387 |
| BssAI | RCCGGY | 6 cut(s) | 48, 178, 198, 205, 226, 453 |
| BssECI | CCNNGG | 1 cut(s) | 430 |
| BssMI | GATC | 1 cut(s) | 412 |
| BssNI | GRCGYC | 2 cut(s) | 209, 383 |
| Bst4CI | ACNGT | 2 cut(s) | 441, 526 |
| BstACI | GRCGYC | 2 cut(s) | 209, 383 |
| BstBAI | YACGTR | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 1 cut(s) | 381 |
| BstKTI | GATC | 1 cut(s) | 415 |
| BstMBI | GATC | 1 cut(s) | 412 |
| BstMCI | CGRYCG | 1 cut(s) | 454 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 275, 284, 368, 424 |
| BstSCI | CCNGG | 3 cut(s) | 79, 150, 430 |
| BstSFI | CTRYAG | 2 cut(s) | 128, 522 |
| BstV1I | GCAGC | 3 cut(s) | 142, 281, 381 |
| BstX2I | RGATCY | 1 cut(s) | 412 |
| BstYI | RGATCY | 1 cut(s) | 412 |
| BstZI | CGGCCG | 1 cut(s) | 451 |
| BsuRI | GGCC | 5 cut(s) | 52, 182, 202, 453, 553 |
| BtrI | CACGTC | 3 cut(s) | 366, 401, 422 |
| BtsI | GCAGTG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 2 cut(s) | 12, 319 |
| BveI | ACCTGC | 1 cut(s) | 135 |
| Cac8I | GCNNGC | 1 cut(s) | 381 |
| Cfr10I | RCCGGY | 6 cut(s) | 48, 178, 198, 205, 226, 453 |
| Cfr13I | GGNCC | 1 cut(s) | 46 |
| CpoI | CGGWCCG | 1 cut(s) | 46 |
| CseI | GACGC | 2 cut(s) | 198, 372 |
| CspAI | ACCGGT | 1 cut(s) | 226 |
| CspI | CGGWCCG | 1 cut(s) | 46 |
| DpnI | GATC | 1 cut(s) | 414 |
| DpnII | GATC | 1 cut(s) | 412 |
| EaeI | YGGCCR | 5 cut(s) | 50, 180, 200, 451, 551 |
| EagI | CGGCCG | 1 cut(s) | 451 |
| EclXI | CGGCCG | 1 cut(s) | 451 |
| Eco47I | GGWCC | 1 cut(s) | 46 |
| Eco52I | CGGCCG | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 2 cut(s) | 78, 309 |
| Eco72I | CACGTG | 1 cut(s) | 309 |
| FaiI | YATR | 4 cut(s) | 9, 116, 139, 373 |
| Fnu4HI | GCNGC | 6 cut(s) | 111, 131, 270, 340, 348, 395 |
| Fsp4HI | GCNGC | 6 cut(s) | 111, 131, 270, 340, 348, 395 |
| GluI | GCNGC | 6 cut(s) | 111, 131, 270, 340, 348, 395 |
| GsaI | CCCAGC | 1 cut(s) | 304 |
| HaeIII | GGCC | 5 cut(s) | 52, 182, 202, 453, 553 |
| HgaI | GACGC | 2 cut(s) | 198, 372 |
| Hin1I | GRCGYC | 2 cut(s) | 209, 383 |
| HincII | GTYRAC | 3 cut(s) | 437, 448, 459 |
| HindII | GTYRAC | 3 cut(s) | 437, 448, 459 |
| HinfI | GANTC | 1 cut(s) | 353 |
| HphI | GGTGA | 1 cut(s) | 90 |
| Hpy166II | GTNNAC | 3 cut(s) | 437, 448, 459 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy8I | GTNNAC | 3 cut(s) | 437, 448, 459 |
| Hpy99I | CGWCG | 1 cut(s) | 544 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4III | ACNGT | 2 cut(s) | 441, 526 |
| HpyCH4IV | ACGT | 5 cut(s) | 308, 365, 400, 421, 542 |
| HpyCH4V | TGCA | 3 cut(s) | 130, 269, 312 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 275, 284, 368, 424 |
| HpySE526I | ACGT | 5 cut(s) | 308, 365, 400, 421, 542 |
| Hsp92I | GRCGYC | 2 cut(s) | 209, 383 |
| Kzo9I | GATC | 1 cut(s) | 412 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 281, 381 |
| LweI | GCATC | 2 cut(s) | 142, 527 |
| MaeII | ACGT | 5 cut(s) | 308, 365, 400, 421, 542 |
| MaeIII | GTNAC | 4 cut(s) | 10, 483, 506, 526 |
| MalI | GATC | 1 cut(s) | 414 |
| MboI | GATC | 1 cut(s) | 412 |
| MflI | RGATCY | 1 cut(s) | 412 |
| MluCI | AATT | 1 cut(s) | 186 |
| MnlI | CCTC | 3 cut(s) | 102, 106, 114 |
| MroXI | GAANNNNTTC | 1 cut(s) | 23 |
| MseI | TTAA | 1 cut(s) | 562 |
| MspA1I | CMGCKG | 1 cut(s) | 394 |
| MspR9I | CCNGG | 3 cut(s) | 81, 152, 432 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 275, 284, 368, 424 |
| NciI | CCSGG | 3 cut(s) | 81, 152, 432 |
| NdeII | GATC | 1 cut(s) | 412 |
| NlaIV | GGNNCC | 2 cut(s) | 156, 177 |
| NmeAIII | GCCGAG | 1 cut(s) | 360 |
| NmuCI | GTSAC | 3 cut(s) | 10, 483, 506 |
| PaqCI | CACCTGC | 1 cut(s) | 135 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PdmI | GAANNNNTTC | 1 cut(s) | 23 |
| PfeI | GAWTC | 1 cut(s) | 353 |
| PinAI | ACCGGT | 1 cut(s) | 226 |
| PkrI | GCNGC | 6 cut(s) | 112, 132, 271, 341, 349, 396 |
| PmaCI | CACGTG | 1 cut(s) | 309 |
| PmlI | CACGTG | 1 cut(s) | 309 |
| Ppu21I | YACGTR | 1 cut(s) | 309 |
| PspCI | CACGTG | 1 cut(s) | 309 |
| PspFI | CCCAGC | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 2 cut(s) | 156, 177 |
| PspPI | GGNCC | 1 cut(s) | 46 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 54, 86 |
| PstI | CTGCAG | 1 cut(s) | 132 |
| PsuI | RGATCY | 1 cut(s) | 412 |
| PvuII | CAGCTG | 1 cut(s) | 394 |
| Rsr2I | CGGWCCG | 1 cut(s) | 46 |
| RsrII | CGGWCCG | 1 cut(s) | 46 |
| SaqAI | TTAA | 1 cut(s) | 562 |
| SatI | GCNGC | 6 cut(s) | 111, 131, 270, 340, 348, 395 |
| Sau3AI | GATC | 1 cut(s) | 412 |
| Sau96I | GGNCC | 1 cut(s) | 46 |
| ScrFI | CCNGG | 3 cut(s) | 81, 152, 432 |
| SfaNI | GCATC | 2 cut(s) | 142, 527 |
| SfcI | CTRYAG | 2 cut(s) | 128, 522 |
| SgrAI | CRCCGGYG | 1 cut(s) | 205 |
| SinI | GGWCC | 1 cut(s) | 46 |
| Sse9I | AATT | 1 cut(s) | 186 |
| SsiI | CCGC | 3 cut(s) | 111, 340, 348 |
| StyD4I | CCNGG | 3 cut(s) | 79, 150, 430 |
| TaaI | ACNGT | 2 cut(s) | 441, 526 |
| TaiI | ACGT | 5 cut(s) | 311, 368, 403, 424, 545 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 1 cut(s) | 186 |
| TauI | GCSGC | 3 cut(s) | 113, 342, 350 |
| TfiI | GAWTC | 1 cut(s) | 353 |
| Tru1I | TTAA | 1 cut(s) | 562 |
| Tru9I | TTAA | 1 cut(s) | 562 |
| TscAI | CASTG | 2 cut(s) | 19, 319 |
| TseFI | GTSAC | 3 cut(s) | 10, 483, 506 |
| TseI | GCWGC | 3 cut(s) | 130, 269, 394 |
| Tsp45I | GTSAC | 3 cut(s) | 10, 483, 506 |
| TspRI | CASTG | 2 cut(s) | 19, 319 |
| VpaK11BI | GGWCC | 1 cut(s) | 46 |
| XapI | RAATTY | 1 cut(s) | 186 |
| XmnI | GAANNNNTTC | 1 cut(s) | 23 |