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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 587 |
| AciI | CCGC | 2 cut(s) | 361, 508 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AdeI | CACNNNGTG | 1 cut(s) | 769 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 3 cut(s) | 13, 376, 625 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 284 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 161, 710 |
| AluI | AGCT | 2 cut(s) | 161, 710 |
| Alw21I | GWGCWC | 1 cut(s) | 712 |
| Alw26I | GTCTC | 3 cut(s) | 292, 494, 598 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 697 |
| BanI | GGYRCC | 1 cut(s) | 587 |
| BanII | GRGCYC | 1 cut(s) | 712 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 461, 493 |
| BauI | CACGAG | 1 cut(s) | 711 |
| BbsI | GAAGAC | 3 cut(s) | 273, 283, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 712 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 215, 342, 494 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BclI | TGATCA | 1 cut(s) | 685 |
| BcoDI | GTCTC | 3 cut(s) | 292, 494, 598 |
| BfaI | CTAG | 5 cut(s) | 51, 126, 338, 573, 797 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 284 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 530, 589 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 442, 748 |
| BpiI | GAAGAC | 3 cut(s) | 273, 283, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseSI | GKGCMC | 1 cut(s) | 697 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 587 |
| BsiHKAI | GWGCWC | 1 cut(s) | 712 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 3 cut(s) | 292, 494, 598 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 697, 712 |
| Bsp143I | GATC | 4 cut(s) | 444, 685, 781, 793 |
| BspACI | CCGC | 2 cut(s) | 361, 508 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspLI | GGNNCC | 2 cut(s) | 530, 589 |
| BspT107I | GGYRCC | 1 cut(s) | 587 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssMI | GATC | 4 cut(s) | 444, 685, 781, 793 |
| BssSI | CACGAG | 1 cut(s) | 711 |
| Bst2BI | CACGAG | 1 cut(s) | 711 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 282 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 758 |
| BstDEI | CTNAG | 2 cut(s) | 184, 600 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 4 cut(s) | 447, 688, 784, 796 |
| BstMAI | GTCTC | 3 cut(s) | 292, 494, 598 |
| BstMBI | GATC | 4 cut(s) | 444, 685, 781, 793 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 758 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 89 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 697 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 283, 476 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| CseI | GACGC | 1 cut(s) | 626 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 2 cut(s) | 86, 578 |
| CviJI | RGCY | 9 cut(s) | 48, 95, 124, 129, 161, 182, 357, 576, 710 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 95, 124, 129, 161, 182, 357, 576, 710 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 600 |
| DpnI | GATC | 4 cut(s) | 446, 687, 783, 795 |
| DpnII | GATC | 4 cut(s) | 444, 685, 781, 793 |
| DraIII | CACNNNGTG | 1 cut(s) | 769 |
| DriI | GACNNNNNGTC | 1 cut(s) | 284 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 284 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 710 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 1 cut(s) | 712 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 710 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoICRI | GAGCTC | 1 cut(s) | 710 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 712 |
| FaeI | CATG | 2 cut(s) | 89, 581 |
| FatI | CATG | 2 cut(s) | 85, 577 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 685 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 712 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 5 cut(s) | 51, 126, 338, 573, 797 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HgaI | GACGC | 1 cut(s) | 626 |
| Hin1II | CATG | 2 cut(s) | 89, 581 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 320, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 2 cut(s) | 400, 685 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| HpyAV | CCTTC | 1 cut(s) | 491 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 282 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 495 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 758 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 600 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 2 cut(s) | 89, 581 |
| Ksp22I | TGATCA | 1 cut(s) | 685 |
| Kzo9I | GATC | 4 cut(s) | 444, 685, 781, 793 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 442, 748 |
| MaeI | CTAG | 5 cut(s) | 51, 126, 338, 573, 797 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 503, 724 |
| MalI | GATC | 4 cut(s) | 446, 687, 783, 795 |
| MboI | GATC | 4 cut(s) | 444, 685, 781, 793 |
| MboII | GAAGA | 9 cut(s) | 275, 278, 288, 308, 481, 546, 728, 791, 800 |
| MhlI | GDGCHC | 2 cut(s) | 697, 712 |
| MluCI | AATT | 3 cut(s) | 17, 428, 720 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 7 cut(s) | 181, 368, 530, 550, 554, 580, 642 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 582, 612 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 758 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 4 cut(s) | 444, 685, 781, 793 |
| NlaIII | CATG | 2 cut(s) | 89, 581 |
| NlaIV | GGNNCC | 2 cut(s) | 530, 589 |
| NmuCI | GTSAC | 2 cut(s) | 317, 724 |
| NspI | RCATGY | 1 cut(s) | 89 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 712 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 530, 589 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 582, 612 |
| SacI | GAGCTC | 1 cut(s) | 712 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 4 cut(s) | 444, 685, 781, 793 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 697, 712 |
| SetI | ASST | 9 cut(s) | 65, 138, 163, 315, 339, 483, 541, 712, 734 |
| SfaNI | GCATC | 2 cut(s) | 442, 748 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 582, 612 |
| SmlI | CTYRAG | 2 cut(s) | 119, 156 |
| SmoI | CTYRAG | 2 cut(s) | 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 428, 720 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SsiI | CCGC | 2 cut(s) | 361, 508 |
| SspMI | CTAG | 5 cut(s) | 51, 126, 338, 573, 797 |
| SstI | GAGCTC | 1 cut(s) | 712 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 145, 282 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 3 cut(s) | 120, 294, 670 |
| TasI | AATT | 3 cut(s) | 17, 428, 720 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseFI | GTSAC | 2 cut(s) | 317, 724 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 724 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 656 |
| TspGWI | ACGGA | 2 cut(s) | 305, 541 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 2 cut(s) | 50, 796 |
| XceI | RCATGY | 1 cut(s) | 89 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 5 cut(s) | 51, 126, 338, 573, 797 |