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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 313 |
| AclWI | GGATC | 2 cut(s) | 503, 573 |
| AcsI | RAATTY | 2 cut(s) | 380, 474 |
| AfaI | GTAC | 1 cut(s) | 200 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AgsI | TTSAA | 2 cut(s) | 328, 539 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 240, 272 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 514, 524 |
| AluI | AGCT | 4 cut(s) | 155, 161, 514, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 516 |
| Alw26I | GTCTC | 1 cut(s) | 244 |
| AlwI | GGATC | 2 cut(s) | 503, 573 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 380, 474 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 357 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AxyI | CCTNAGG | 1 cut(s) | 224 |
| BanII | GRGCYC | 1 cut(s) | 516 |
| BbsI | GAAGAC | 2 cut(s) | 225, 428 |
| Bbv12I | GWGCWC | 1 cut(s) | 516 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 294, 448 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BcoDI | GTCTC | 1 cut(s) | 244 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfmI | CTRYAG | 1 cut(s) | 486 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 225, 428 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaI | GGTCTC | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 2 cut(s) | 130, 582 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| Bse21I | CCTNAGG | 1 cut(s) | 224 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseDI | CCNNGG | 2 cut(s) | 130, 582 |
| BseGI | GGATG | 1 cut(s) | 552 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMII | CTCAG | 1 cut(s) | 238 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 516 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 1 cut(s) | 244 |
| Bso31I | GGTCTC | 1 cut(s) | 244 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 516 |
| Bsp143I | GATC | 2 cut(s) | 495, 578 |
| BspACI | CCGC | 2 cut(s) | 79, 313 |
| BspCNI | CTCAG | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 508 |
| BspPI | GGATC | 2 cut(s) | 503, 573 |
| BspTNI | GGTCTC | 1 cut(s) | 244 |
| BssECI | CCNNGG | 2 cut(s) | 130, 582 |
| BssMI | GATC | 2 cut(s) | 495, 578 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 137, 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 224, 462 |
| BstDSI | CCRYGG | 1 cut(s) | 582 |
| BstF5I | GGATG | 1 cut(s) | 552 |
| BstKTI | GATC | 2 cut(s) | 498, 581 |
| BstMAI | GTCTC | 1 cut(s) | 244 |
| BstMBI | GATC | 2 cut(s) | 495, 578 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 486 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 225, 428 |
| BstX2I | RGATCY | 1 cut(s) | 578 |
| BstYI | RGATCY | 1 cut(s) | 578 |
| Bsu36I | CCTNAGG | 1 cut(s) | 224 |
| BtgI | CCRYGG | 1 cut(s) | 582 |
| BtsCI | GGATG | 1 cut(s) | 552 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 137, 153 |
| CciI | TCATGA | 1 cut(s) | 508 |
| Csp6I | GTAC | 1 cut(s) | 199 |
| CviAII | CATG | 2 cut(s) | 509, 545 |
| CviJI | RGCY | 9 cut(s) | 124, 129, 155, 161, 182, 232, 309, 514, 524 |
| CviKI_1 | RGCY | 9 cut(s) | 124, 129, 155, 161, 182, 232, 309, 514, 524 |
| CviQI | GTAC | 1 cut(s) | 199 |
| DdeI | CTNAG | 3 cut(s) | 184, 224, 462 |
| DpnI | GATC | 2 cut(s) | 497, 580 |
| DpnII | GATC | 2 cut(s) | 495, 578 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 514 |
| Eco24I | GRGCYC | 1 cut(s) | 516 |
| Eco31I | GGTCTC | 1 cut(s) | 244 |
| Eco53kI | GAGCTC | 1 cut(s) | 514 |
| Eco81I | CCTNAGG | 1 cut(s) | 224 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 514 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoT38I | GRGCYC | 1 cut(s) | 516 |
| FaeI | CATG | 2 cut(s) | 512, 548 |
| FatI | CATG | 2 cut(s) | 508, 544 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 539 |
| FriOI | GRGCYC | 1 cut(s) | 516 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| Hin1II | CATG | 2 cut(s) | 512, 548 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 47, 102, 115, 272, 424 |
| Hpy188I | TCNGA | 1 cut(s) | 352 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 119, 226, 284, 338, 509, 576 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 264 |
| HpyCH4V | TGCA | 1 cut(s) | 449 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 224, 462 |
| HpySE526I | ACGT | 1 cut(s) | 264 |
| Hsp92II | CATG | 2 cut(s) | 512, 548 |
| Kzo9I | GATC | 2 cut(s) | 495, 578 |
| LmnI | GCTCC | 2 cut(s) | 34, 521 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 264 |
| MaeIII | GTNAC | 3 cut(s) | 5, 269, 481 |
| MalI | GATC | 2 cut(s) | 497, 580 |
| MboI | GATC | 2 cut(s) | 495, 578 |
| MboII | GAAGA | 5 cut(s) | 227, 230, 260, 433, 574 |
| MflI | RGATCY | 1 cut(s) | 578 |
| MhlI | GDGCHC | 1 cut(s) | 516 |
| MluCI | AATT | 4 cut(s) | 17, 380, 474, 571 |
| MlyI | GAGTC | 3 cut(s) | 41, 266, 418 |
| MnlI | CCTC | 5 cut(s) | 181, 222, 233, 320, 452 |
| MroXI | GAANNNNTTC | 1 cut(s) | 357 |
| MseI | TTAA | 2 cut(s) | 366, 374 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| NdeII | GATC | 2 cut(s) | 495, 578 |
| NlaIII | CATG | 2 cut(s) | 512, 548 |
| NmuCI | GTSAC | 1 cut(s) | 269 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 508 |
| PdmI | GAANNNNTTC | 1 cut(s) | 357 |
| PfeI | GAWTC | 2 cut(s) | 102, 115 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 41, 266, 418 |
| PpsI | GAGTC | 3 cut(s) | 41, 266, 418 |
| Psp124BI | GAGCTC | 1 cut(s) | 516 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PsuI | RGATCY | 1 cut(s) | 578 |
| RsaI | GTAC | 1 cut(s) | 200 |
| RsaNI | GTAC | 1 cut(s) | 199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SacI | GAGCTC | 1 cut(s) | 516 |
| SaqAI | TTAA | 2 cut(s) | 366, 374 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 495, 578 |
| SchI | GAGTC | 3 cut(s) | 41, 266, 418 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SduI | GDGCHC | 1 cut(s) | 516 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 486 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 380, 474, 571 |
| SsiI | CCGC | 2 cut(s) | 79, 313 |
| SspMI | CTAG | 1 cut(s) | 126 |
| SstI | GAGCTC | 1 cut(s) | 516 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 267 |
| TaqI | TCGA | 4 cut(s) | 96, 120, 246, 575 |
| TasI | AATT | 4 cut(s) | 17, 380, 474, 571 |
| TfiI | GAWTC | 2 cut(s) | 102, 115 |
| Tru1I | TTAA | 2 cut(s) | 366, 374 |
| Tru9I | TTAA | 2 cut(s) | 366, 374 |
| TseFI | GTSAC | 1 cut(s) | 269 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 5 cut(s) | 224, 228, 420, 497, 542 |
| TspGWI | ACGGA | 3 cut(s) | 257, 508, 571 |
| XapI | RAATTY | 2 cut(s) | 380, 474 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 357 |
| XspI | CTAG | 1 cut(s) | 126 |