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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 414 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AclWI | GGATC | 2 cut(s) | 366, 470 |
| AcsI | RAATTY | 2 cut(s) | 161, 173 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 388 |
| AluI | AGCT | 3 cut(s) | 307, 317, 388 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 2 cut(s) | 366, 470 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| ApoI | RAATTY | 2 cut(s) | 161, 173 |
| AspLEI | GCGC | 1 cut(s) | 589 |
| BanII | GRGCYC | 1 cut(s) | 309 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 445, 477 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 3 cut(s) | 87, 241, 242 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 1 cut(s) | 590 |
| BmiI | GGNNCC | 2 cut(s) | 529, 561 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bpu10I | CCTNAGC | 1 cut(s) | 303 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 2 cut(s) | 345, 473 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslFI | GGGAC | 1 cut(s) | 401 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsmFI | GGGAC | 1 cut(s) | 401 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 1 cut(s) | 309 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 288, 371, 475 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspLI | GGNNCC | 2 cut(s) | 529, 561 |
| BspPI | GGATC | 2 cut(s) | 366, 470 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 3 cut(s) | 288, 371, 475 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstDEI | CTNAG | 6 cut(s) | 255, 303, 311, 420, 494, 599 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 2 cut(s) | 345, 473 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstH2I | RGCGCY | 1 cut(s) | 590 |
| BstHHI | GCGC | 1 cut(s) | 589 |
| BstKTI | GATC | 3 cut(s) | 291, 374, 478 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 3 cut(s) | 288, 371, 475 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 2 cut(s) | 345, 473 |
| CfoI | GCGC | 1 cut(s) | 589 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 2 cut(s) | 403, 438 |
| CviAII | CATG | 1 cut(s) | 338 |
| CviJI | RGCY | 6 cut(s) | 307, 317, 388, 562, 575, 605 |
| CviKI_1 | RGCY | 6 cut(s) | 307, 317, 388, 562, 575, 605 |
| DdeI | CTNAG | 6 cut(s) | 255, 303, 311, 420, 494, 599 |
| DpnI | GATC | 3 cut(s) | 290, 373, 477 |
| DpnII | GATC | 3 cut(s) | 288, 371, 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 309 |
| FaeI | CATG | 1 cut(s) | 341 |
| FaqI | GGGAC | 1 cut(s) | 401 |
| FatI | CATG | 1 cut(s) | 337 |
| FokI | GGATG | 2 cut(s) | 332, 480 |
| FriOI | GRGCYC | 1 cut(s) | 309 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 1 cut(s) | 588 |
| HaeII | RGCGCY | 1 cut(s) | 590 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 2 cut(s) | 403, 438 |
| HhaI | GCGC | 1 cut(s) | 589 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin1II | CATG | 1 cut(s) | 341 |
| Hin6I | GCGC | 1 cut(s) | 587 |
| HinP1I | GCGC | 1 cut(s) | 587 |
| HinfI | GANTC | 5 cut(s) | 65, 217, 267, 365, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 145, 475 |
| Hpy188III | TCNNGA | 5 cut(s) | 131, 302, 369, 395, 465 |
| HpyAV | CCTTC | 3 cut(s) | 15, 238, 493 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 242 |
| HpyF3I | CTNAG | 6 cut(s) | 255, 303, 311, 420, 494, 599 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| Hsp92II | CATG | 1 cut(s) | 341 |
| HspAI | GCGC | 1 cut(s) | 587 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 288, 371, 475 |
| LmnI | GCTCC | 2 cut(s) | 312, 559 |
| LpnPI | CCDG | 5 cut(s) | 83, 315, 408, 450, 557 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 502 |
| MalI | GATC | 3 cut(s) | 290, 373, 477 |
| MboI | GATC | 3 cut(s) | 288, 371, 475 |
| MboII | GAAGA | 6 cut(s) | 20, 23, 53, 226, 367, 545 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 1 cut(s) | 309 |
| MluCI | AATT | 3 cut(s) | 161, 173, 403 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 4 cut(s) | 419, 529, 549, 579 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 350 |
| MspI | CCGG | 1 cut(s) | 395 |
| MvnI | CGCG | 1 cut(s) | 414 |
| NdeII | GATC | 3 cut(s) | 288, 371, 475 |
| NlaIII | CATG | 1 cut(s) | 341 |
| NlaIV | GGNNCC | 2 cut(s) | 529, 561 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 436 |
| PfeI | GAWTC | 3 cut(s) | 267, 365, 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 2 cut(s) | 529, 561 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 350 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 3 cut(s) | 288, 371, 475 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 1 cut(s) | 309 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 350 |
| Sse9I | AATT | 3 cut(s) | 161, 173, 403 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 3 cut(s) | 161, 173, 403 |
| TfiI | GAWTC | 3 cut(s) | 267, 365, 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 335, 368 |
| TspGWI | ACGGA | 3 cut(s) | 50, 364, 540 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XapI | RAATTY | 2 cut(s) | 161, 173 |
| XspI | CTAG | 1 cut(s) | 83 |