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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 279 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 615 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 875 |
| AccII | CGCG | 3 cut(s) | 218, 220, 555 |
| AccIII | TCCGGA | 1 cut(s) | 535 |
| AciI | CCGC | 1 cut(s) | 32 |
| AclI | AACGTT | 1 cut(s) | 756 |
| AclWI | GGATC | 1 cut(s) | 867 |
| AfaI | GTAC | 2 cut(s) | 479, 742 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 566, 637, 875 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 167, 262, 396 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 7 cut(s) | 19, 155, 179, 249, 290, 448, 470 |
| AluI | AGCT | 7 cut(s) | 19, 155, 179, 249, 290, 448, 470 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 667 |
| Alw26I | GTCTC | 2 cut(s) | 32, 382 |
| Alw44I | GTGCAC | 1 cut(s) | 663 |
| AlwI | GGATC | 1 cut(s) | 867 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 252, 875 |
| Aor13HI | TCCGGA | 1 cut(s) | 535 |
| ApaLI | GTGCAC | 1 cut(s) | 663 |
| AspLEI | GCGC | 6 cut(s) | 50, 81, 220, 222, 458, 557 |
| AspS9I | GGNCC | 2 cut(s) | 67, 617 |
| AsuHPI | GGTGA | 1 cut(s) | 620 |
| AvaII | GGWCC | 2 cut(s) | 67, 617 |
| BaeGI | GKGCMC | 1 cut(s) | 667 |
| BauI | CACGAG | 2 cut(s) | 433, 491 |
| BbsI | GAAGAC | 2 cut(s) | 362, 855 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 667 |
| BbvCI | CCTCAGC | 1 cut(s) | 245 |
| BccI | CCATC | 5 cut(s) | 122, 194, 228, 304, 818 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 382 |
| BfaI | CTAG | 4 cut(s) | 35, 126, 510, 720 |
| BfmI | CTRYAG | 1 cut(s) | 547 |
| BfoI | RGCGCY | 1 cut(s) | 459 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglII | AGATCT | 1 cut(s) | 829 |
| BlpI | GCTNAGC | 1 cut(s) | 708 |
| Bme18I | GGWCC | 2 cut(s) | 67, 617 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 617 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmsI | GCATC | 1 cut(s) | 755 |
| BpiI | GAAGAC | 2 cut(s) | 362, 855 |
| Bpu10I | CCTNAGC | 1 cut(s) | 245 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 708 |
| BsaBI | GATNNNNATC | 3 cut(s) | 347, 828, 834 |
| BsaJI | CCNNGG | 1 cut(s) | 516 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 566, 637, 875 |
| Bse1I | ACTGG | 2 cut(s) | 49, 880 |
| Bse8I | GATNNNNATC | 3 cut(s) | 347, 828, 834 |
| BseAI | TCCGGA | 1 cut(s) | 535 |
| BseDI | CCNNGG | 1 cut(s) | 516 |
| BseGI | GGATG | 3 cut(s) | 114, 575, 746 |
| BseJI | GATNNNNATC | 3 cut(s) | 347, 828, 834 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 566, 637, 875 |
| BseMII | CTCAG | 2 cut(s) | 259, 699 |
| BseNI | ACTGG | 2 cut(s) | 49, 880 |
| BsePI | GCGCGC | 1 cut(s) | 218 |
| BseSI | GKGCMC | 1 cut(s) | 667 |
| Bsh1236I | CGCG | 3 cut(s) | 218, 220, 555 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 667 |
| BsiSI | CCGG | 2 cut(s) | 536, 716 |
| BslFI | GGGAC | 2 cut(s) | 289, 611 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 566, 637, 875 |
| BsmAI | GTCTC | 2 cut(s) | 32, 382 |
| BsmBI | CGTCTC | 1 cut(s) | 382 |
| BsmFI | GGGAC | 2 cut(s) | 289, 611 |
| BsmI | GAATGC | 1 cut(s) | 424 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 667 |
| Bsp13I | TCCGGA | 1 cut(s) | 535 |
| Bsp143I | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 708 |
| BspACI | CCGC | 1 cut(s) | 32 |
| BspCNI | CTCAG | 2 cut(s) | 258, 700 |
| BspEI | TCCGGA | 1 cut(s) | 535 |
| BspFNI | CGCG | 3 cut(s) | 218, 220, 555 |
| BspHI | TCATGA | 2 cut(s) | 195, 442 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 1 cut(s) | 867 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 2 cut(s) | 49, 880 |
| BssECI | CCNNGG | 1 cut(s) | 516 |
| BssHII | GCGCGC | 1 cut(s) | 218 |
| BssMI | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| BssSI | CACGAG | 2 cut(s) | 433, 491 |
| Bst2BI | CACGAG | 2 cut(s) | 433, 491 |
| Bst4CI | ACNGT | 1 cut(s) | 674 |
| Bst6I | CTCTTC | 1 cut(s) | 686 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 153, 220, 663 |
| BstDEI | CTNAG | 5 cut(s) | 245, 525, 588, 708, 839 |
| BstDSI | CCRYGG | 1 cut(s) | 516 |
| BstF5I | GGATG | 3 cut(s) | 114, 575, 746 |
| BstFNI | CGCG | 3 cut(s) | 218, 220, 555 |
| BstH2I | RGCGCY | 1 cut(s) | 459 |
| BstHHI | GCGC | 6 cut(s) | 50, 81, 220, 222, 458, 557 |
| BstKTI | GATC | 5 cut(s) | 351, 820, 832, 838, 862 |
| BstMAI | GTCTC | 2 cut(s) | 32, 382 |
| BstMBI | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 794 |
| BstSFI | CTRYAG | 1 cut(s) | 547 |
| BstSLI | GKGCMC | 1 cut(s) | 667 |
| BstUI | CGCG | 3 cut(s) | 218, 220, 555 |
| BstV2I | GAAGAC | 2 cut(s) | 362, 855 |
| BstX2I | RGATCY | 1 cut(s) | 829 |
| BstYI | RGATCY | 1 cut(s) | 829 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 1 cut(s) | 516 |
| BtsCI | GGATG | 3 cut(s) | 114, 575, 746 |
| Cac8I | GCNNGC | 3 cut(s) | 153, 220, 663 |
| CaiI | CAGNNNCTG | 2 cut(s) | 252, 875 |
| CciI | TCATGA | 2 cut(s) | 195, 442 |
| CfoI | GCGC | 6 cut(s) | 50, 81, 220, 222, 458, 557 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 617 |
| CseI | GACGC | 2 cut(s) | 224, 618 |
| Csp6I | GTAC | 2 cut(s) | 478, 741 |
| CviAII | CATG | 4 cut(s) | 196, 208, 443, 805 |
| CviQI | GTAC | 2 cut(s) | 478, 741 |
| DdeI | CTNAG | 5 cut(s) | 245, 525, 588, 708, 839 |
| DpnI | GATC | 5 cut(s) | 350, 819, 831, 837, 861 |
| DpnII | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 615 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 615 |
| Eam1104I | CTCTTC | 1 cut(s) | 686 |
| EarI | CTCTTC | 1 cut(s) | 686 |
| Eco47I | GGWCC | 2 cut(s) | 67, 617 |
| Esp3I | CGTCTC | 1 cut(s) | 382 |
| FaeI | CATG | 4 cut(s) | 199, 211, 446, 808 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 2 cut(s) | 289, 611 |
| FatI | CATG | 4 cut(s) | 195, 207, 442, 804 |
| FokI | GGATG | 3 cut(s) | 101, 582, 733 |
| FspBI | CTAG | 4 cut(s) | 35, 126, 510, 720 |
| GlaI | GCGC | 6 cut(s) | 49, 80, 219, 221, 457, 556 |
| HaeII | RGCGCY | 1 cut(s) | 459 |
| HapII | CCGG | 2 cut(s) | 536, 716 |
| HgaI | GACGC | 2 cut(s) | 224, 618 |
| HhaI | GCGC | 6 cut(s) | 50, 81, 220, 222, 458, 557 |
| Hin1II | CATG | 4 cut(s) | 199, 211, 446, 808 |
| Hin6I | GCGC | 6 cut(s) | 48, 79, 218, 220, 456, 555 |
| HinP1I | GCGC | 6 cut(s) | 48, 79, 218, 220, 456, 555 |
| HinfI | GANTC | 2 cut(s) | 358, 539 |
| HpaII | CCGG | 2 cut(s) | 536, 716 |
| HphI | GGTGA | 1 cut(s) | 620 |
| Hpy166II | GTNNAC | 2 cut(s) | 665, 741 |
| Hpy188I | TCNGA | 4 cut(s) | 71, 132, 286, 408 |
| Hpy8I | GTNNAC | 2 cut(s) | 665, 741 |
| HpyAV | CCTTC | 3 cut(s) | 379, 490, 635 |
| HpyCH4III | ACNGT | 1 cut(s) | 674 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 465, 756 |
| HpyCH4V | TGCA | 3 cut(s) | 422, 665, 746 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 794 |
| HpyF3I | CTNAG | 5 cut(s) | 245, 525, 588, 708, 839 |
| HpySE526I | ACGT | 3 cut(s) | 135, 465, 756 |
| Hsp92II | CATG | 4 cut(s) | 199, 211, 446, 808 |
| HspAI | GCGC | 6 cut(s) | 48, 79, 218, 220, 456, 555 |
| Kpn2I | TCCGGA | 1 cut(s) | 535 |
| Kzo9I | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| LweI | GCATC | 1 cut(s) | 755 |
| MaeI | CTAG | 4 cut(s) | 35, 126, 510, 720 |
| MaeII | ACGT | 3 cut(s) | 135, 465, 756 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 5 cut(s) | 350, 819, 831, 837, 861 |
| MboI | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| MboII | GAAGA | 4 cut(s) | 367, 703, 827, 860 |
| MflI | RGATCY | 1 cut(s) | 829 |
| MhlI | GDGCHC | 2 cut(s) | 141, 667 |
| MluCI | AATT | 3 cut(s) | 400, 601, 799 |
| MlyI | GAGTC | 2 cut(s) | 352, 548 |
| MnlI | CCTC | 9 cut(s) | 254, 429, 560, 631, 651, 671, 697, 723, 787 |
| MroI | TCCGGA | 1 cut(s) | 535 |
| MseI | TTAA | 2 cut(s) | 90, 889 |
| MslI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 536, 716 |
| Mva1269I | GAATGC | 1 cut(s) | 424 |
| MvnI | CGCG | 3 cut(s) | 218, 220, 555 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 794 |
| NdeII | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| NlaIII | CATG | 4 cut(s) | 199, 211, 446, 808 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| PagI | TCATGA | 2 cut(s) | 195, 442 |
| PauI | GCGCGC | 1 cut(s) | 218 |
| PctI | GAATGC | 1 cut(s) | 424 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 875 |
| PleI | GAGTC | 2 cut(s) | 352, 547 |
| PpsI | GAGTC | 2 cut(s) | 352, 547 |
| PsiI | TTATAA | 1 cut(s) | 279 |
| Psp1406I | AACGTT | 1 cut(s) | 756 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 2 cut(s) | 67, 617 |
| PstNI | CAGNNNCTG | 2 cut(s) | 252, 875 |
| PsuI | RGATCY | 1 cut(s) | 829 |
| PteI | GCGCGC | 1 cut(s) | 218 |
| RsaI | GTAC | 2 cut(s) | 479, 742 |
| RsaNI | GTAC | 2 cut(s) | 478, 741 |
| RseI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| SaqAI | TTAA | 2 cut(s) | 90, 889 |
| Sau3AI | GATC | 5 cut(s) | 348, 817, 829, 835, 859 |
| Sau96I | GGNCC | 2 cut(s) | 67, 617 |
| SchI | GAGTC | 2 cut(s) | 352, 548 |
| SduI | GDGCHC | 2 cut(s) | 141, 667 |
| SfaNI | GCATC | 1 cut(s) | 755 |
| SfcI | CTRYAG | 1 cut(s) | 547 |
| SinI | GGWCC | 2 cut(s) | 67, 617 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 194, 210 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 3 cut(s) | 400, 601, 799 |
| SsiI | CCGC | 1 cut(s) | 32 |
| SspMI | CTAG | 4 cut(s) | 35, 126, 510, 720 |
| TaaI | ACNGT | 1 cut(s) | 674 |
| TaiI | ACGT | 3 cut(s) | 138, 468, 759 |
| TaqI | TCGA | 2 cut(s) | 351, 834 |
| TasI | AATT | 3 cut(s) | 400, 601, 799 |
| TatI | WGTACW | 1 cut(s) | 740 |
| Tru1I | TTAA | 2 cut(s) | 90, 889 |
| Tru9I | TTAA | 2 cut(s) | 90, 889 |
| TspDTI | ATGAA | 3 cut(s) | 224, 431, 476 |
| TspGWI | ACGGA | 1 cut(s) | 682 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 875 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 663 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 617 |
| XspI | CTAG | 4 cut(s) | 35, 126, 510, 720 |