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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 456 |
| AccIII | TCCGGA | 1 cut(s) | 421 |
| AclWI | GGATC | 2 cut(s) | 323, 393 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcyI | GRCGYC | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 452 |
| AgsI | TTSAA | 2 cut(s) | 148, 396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 4 cut(s) | 288, 334, 344, 415 |
| AluI | AGCT | 4 cut(s) | 288, 334, 344, 415 |
| Alw26I | GTCTC | 2 cut(s) | 64, 268 |
| AlwI | GGATC | 2 cut(s) | 323, 393 |
| Aor13HI | TCCGGA | 1 cut(s) | 421 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 1 cut(s) | 459 |
| BanI | GGYRCC | 1 cut(s) | 456 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| BccI | CCATC | 1 cut(s) | 114 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BcoDI | GTCTC | 2 cut(s) | 64, 268 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BfmI | CTRYAG | 1 cut(s) | 306 |
| BfoI | RGCGCY | 1 cut(s) | 460 |
| BmiI | GGNNCC | 1 cut(s) | 458 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaHI | GRCGYC | 1 cut(s) | 457 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| BsaWI | WCCGGW | 1 cut(s) | 421 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 452 |
| BseAI | TCCGGA | 1 cut(s) | 421 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseGI | GGATG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 452 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BshNI | GGYRCC | 1 cut(s) | 456 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiSI | CCGG | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 452 |
| BsmAI | GTCTC | 2 cut(s) | 64, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp13I | TCCGGA | 1 cut(s) | 421 |
| Bsp143I | GATC | 3 cut(s) | 216, 315, 398 |
| BspCNI | CTCAG | 1 cut(s) | 182 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspEI | TCCGGA | 1 cut(s) | 421 |
| BspHI | TCATGA | 1 cut(s) | 328 |
| BspLI | GGNNCC | 1 cut(s) | 458 |
| BspMAI | CTGCAG | 1 cut(s) | 310 |
| BspPI | GGATC | 2 cut(s) | 323, 393 |
| BspT107I | GGYRCC | 1 cut(s) | 456 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BssMI | GATC | 3 cut(s) | 216, 315, 398 |
| BssNI | GRCGYC | 1 cut(s) | 457 |
| BstACI | GRCGYC | 1 cut(s) | 457 |
| BstDEI | CTNAG | 3 cut(s) | 169, 282, 447 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 1 cut(s) | 372 |
| BstH2I | RGCGCY | 1 cut(s) | 460 |
| BstHHI | GCGC | 1 cut(s) | 459 |
| BstKTI | GATC | 3 cut(s) | 219, 318, 401 |
| BstMAI | GTCTC | 2 cut(s) | 64, 268 |
| BstMBI | GATC | 3 cut(s) | 216, 315, 398 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstSFI | CTRYAG | 1 cut(s) | 306 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 372 |
| CciI | TCATGA | 1 cut(s) | 328 |
| CfoI | GCGC | 1 cut(s) | 459 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| CviAII | CATG | 3 cut(s) | 274, 329, 365 |
| CviJI | RGCY | 5 cut(s) | 129, 288, 334, 344, 415 |
| CviKI_1 | RGCY | 5 cut(s) | 129, 288, 334, 344, 415 |
| DdeI | CTNAG | 3 cut(s) | 169, 282, 447 |
| DinI | GGCGCC | 1 cut(s) | 458 |
| DpnI | GATC | 3 cut(s) | 218, 317, 400 |
| DpnII | GATC | 3 cut(s) | 216, 315, 398 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 450 |
| EgeI | GGCGCC | 1 cut(s) | 458 |
| EheI | GGCGCC | 1 cut(s) | 458 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 3 cut(s) | 277, 332, 368 |
| FaiI | YATR | 7 cut(s) | 29, 126, 275, 330, 347, 366, 435 |
| FatI | CATG | 3 cut(s) | 273, 328, 364 |
| FokI | GGATG | 1 cut(s) | 359 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GlaI | GCGC | 1 cut(s) | 458 |
| HaeII | RGCGCY | 1 cut(s) | 460 |
| HapII | CCGG | 1 cut(s) | 422 |
| HhaI | GCGC | 1 cut(s) | 459 |
| Hin1I | GRCGYC | 1 cut(s) | 457 |
| Hin1II | CATG | 3 cut(s) | 277, 332, 368 |
| Hin6I | GCGC | 1 cut(s) | 457 |
| HinP1I | GCGC | 1 cut(s) | 457 |
| HinfI | GANTC | 5 cut(s) | 8, 92, 244, 294, 425 |
| HpaII | CCGG | 1 cut(s) | 422 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 172 |
| Hpy188III | TCNNGA | 4 cut(s) | 158, 329, 396, 422 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 308 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| HpyF3I | CTNAG | 3 cut(s) | 169, 282, 447 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92I | GRCGYC | 1 cut(s) | 457 |
| Hsp92II | CATG | 3 cut(s) | 277, 332, 368 |
| HspAI | GCGC | 1 cut(s) | 457 |
| KasI | GGCGCC | 1 cut(s) | 456 |
| Kpn2I | TCCGGA | 1 cut(s) | 421 |
| Kzo9I | GATC | 3 cut(s) | 216, 315, 398 |
| LmnI | GCTCC | 2 cut(s) | 18, 341 |
| LpnPI | CCDG | 4 cut(s) | 58, 110, 294, 435 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 3 cut(s) | 89, 301, 437 |
| MalI | GATC | 3 cut(s) | 218, 317, 400 |
| MboI | GATC | 3 cut(s) | 216, 315, 398 |
| MboII | GAAGA | 5 cut(s) | 47, 50, 80, 253, 394 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MluCI | AATT | 3 cut(s) | 200, 430, 475 |
| Mly113I | GGCGCC | 1 cut(s) | 457 |
| MlyI | GAGTC | 2 cut(s) | 86, 238 |
| MnlI | CCTC | 2 cut(s) | 140, 446 |
| MroI | TCCGGA | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 2 cut(s) | 186, 194 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| MspI | CCGG | 1 cut(s) | 422 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NarI | GGCGCC | 1 cut(s) | 457 |
| NdeII | GATC | 3 cut(s) | 216, 315, 398 |
| NlaIII | CATG | 3 cut(s) | 277, 332, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 458 |
| NmuCI | GTSAC | 2 cut(s) | 89, 437 |
| PagI | TCATGA | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 3 cut(s) | 8, 294, 425 |
| PleI | GAGTC | 2 cut(s) | 86, 238 |
| PluTI | GGCGCC | 1 cut(s) | 460 |
| PpsI | GAGTC | 2 cut(s) | 86, 238 |
| PspN4I | GGNNCC | 1 cut(s) | 458 |
| PstI | CTGCAG | 1 cut(s) | 310 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SaqAI | TTAA | 2 cut(s) | 186, 194 |
| Sau3AI | GATC | 3 cut(s) | 216, 315, 398 |
| SchI | GAGTC | 2 cut(s) | 86, 238 |
| SetI | ASST | 7 cut(s) | 87, 111, 290, 326, 336, 346, 417 |
| SfcI | CTRYAG | 1 cut(s) | 306 |
| SfoI | GGCGCC | 1 cut(s) | 458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| Sse9I | AATT | 3 cut(s) | 200, 430, 475 |
| SspDI | GGCGCC | 1 cut(s) | 456 |
| SspMI | CTAG | 1 cut(s) | 110 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 3 cut(s) | 66, 292, 297 |
| TasI | AATT | 3 cut(s) | 200, 430, 475 |
| TfiI | GAWTC | 3 cut(s) | 8, 294, 425 |
| Tru1I | TTAA | 2 cut(s) | 186, 194 |
| Tru9I | TTAA | 2 cut(s) | 186, 194 |
| TseFI | GTSAC | 2 cut(s) | 89, 437 |
| Tsp45I | GTSAC | 2 cut(s) | 89, 437 |
| TspDTI | ATGAA | 7 cut(s) | 17, 44, 48, 212, 262, 317, 362 |
| TspGWI | ACGGA | 3 cut(s) | 77, 328, 391 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 450 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 110 |