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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 386 |
| AciI | CCGC | 1 cut(s) | 528 |
| AcoI | YGGCCR | 1 cut(s) | 373 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AcyI | GRCGYC | 1 cut(s) | 387 |
| AdeI | CACNNNGTG | 1 cut(s) | 568 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 489 |
| AgsI | TTSAA | 2 cut(s) | 121, 424 |
| AluBI | AGCT | 4 cut(s) | 307, 317, 509, 560 |
| AluI | AGCT | 4 cut(s) | 307, 317, 509, 560 |
| Alw21I | GWGCWC | 3 cut(s) | 218, 309, 511 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AoxI | GGCC | 1 cut(s) | 373 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 389 |
| AsuHPI | GGTGA | 1 cut(s) | 517 |
| BaeGI | GKGCMC | 1 cut(s) | 496 |
| BalI | TGGCCA | 1 cut(s) | 375 |
| BanI | GGYRCC | 1 cut(s) | 386 |
| BanII | GRGCYC | 2 cut(s) | 309, 511 |
| BauI | CACGAG | 1 cut(s) | 510 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 3 cut(s) | 218, 309, 511 |
| BccI | CCATC | 4 cut(s) | 87, 241, 242, 414 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 2 cut(s) | 83, 596 |
| BfoI | RGCGCY | 1 cut(s) | 390 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BmiI | GGNNCC | 1 cut(s) | 388 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaHI | GRCGYC | 1 cut(s) | 387 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaWI | WCCGGW | 1 cut(s) | 482 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 489 |
| Bse3DI | GCAATG | 1 cut(s) | 370 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BseMI | GCAATG | 1 cut(s) | 370 |
| BseMII | CTCAG | 1 cut(s) | 438 |
| BseSI | GKGCMC | 1 cut(s) | 496 |
| BshFI | GGCC | 1 cut(s) | 375 |
| BshNI | GGYRCC | 1 cut(s) | 386 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 3 cut(s) | 218, 309, 511 |
| BsiSI | CCGG | 1 cut(s) | 483 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 375 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 4 cut(s) | 218, 309, 496, 511 |
| Bsp143I | GATC | 3 cut(s) | 189, 580, 592 |
| BspACI | CCGC | 1 cut(s) | 528 |
| BspANI | GGCC | 1 cut(s) | 375 |
| BspCNI | CTCAG | 1 cut(s) | 439 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 388 |
| BspT107I | GGYRCC | 1 cut(s) | 386 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 370 |
| BssMI | GATC | 3 cut(s) | 189, 580, 592 |
| BssNI | GRCGYC | 1 cut(s) | 387 |
| BssSI | CACGAG | 1 cut(s) | 510 |
| Bst2BI | CACGAG | 1 cut(s) | 510 |
| Bst4CI | ACNGT | 2 cut(s) | 263, 288 |
| BstACI | GRCGYC | 1 cut(s) | 387 |
| BstDEI | CTNAG | 4 cut(s) | 255, 350, 399, 447 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 1 cut(s) | 390 |
| BstHHI | GCGC | 1 cut(s) | 389 |
| BstKTI | GATC | 3 cut(s) | 192, 583, 595 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 3 cut(s) | 189, 580, 592 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 536, 557 |
| BstSLI | GKGCMC | 1 cut(s) | 496 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 383 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BsuRI | GGCC | 1 cut(s) | 375 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 389 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 425 |
| CviAII | CATG | 3 cut(s) | 302, 338, 377 |
| CviJI | RGCY | 8 cut(s) | 25, 102, 307, 317, 375, 405, 509, 560 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 102, 307, 317, 375, 405, 509, 560 |
| DdeI | CTNAG | 4 cut(s) | 255, 350, 399, 447 |
| DinI | GGCGCC | 1 cut(s) | 388 |
| DpnI | GATC | 3 cut(s) | 191, 582, 594 |
| DpnII | GATC | 3 cut(s) | 189, 580, 592 |
| DraIII | CACNNNGTG | 1 cut(s) | 568 |
| EaeI | YGGCCR | 1 cut(s) | 373 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 509 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 511 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 509 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 509 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 511 |
| EgeI | GGCGCC | 1 cut(s) | 388 |
| EheI | GGCGCC | 1 cut(s) | 388 |
| FaeI | CATG | 3 cut(s) | 305, 341, 380 |
| FaiI | YATR | 9 cut(s) | 99, 178, 194, 303, 320, 339, 378, 463, 567 |
| FatI | CATG | 3 cut(s) | 301, 337, 376 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 511 |
| FspBI | CTAG | 2 cut(s) | 83, 596 |
| GlaI | GCGC | 1 cut(s) | 388 |
| HaeII | RGCGCY | 1 cut(s) | 390 |
| HaeIII | GGCC | 1 cut(s) | 375 |
| HapII | CCGG | 1 cut(s) | 483 |
| HgaI | GACGC | 1 cut(s) | 425 |
| HhaI | GCGC | 1 cut(s) | 389 |
| Hin1I | GRCGYC | 1 cut(s) | 387 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 380 |
| Hin6I | GCGC | 1 cut(s) | 387 |
| HinP1I | GCGC | 1 cut(s) | 387 |
| HinfI | GANTC | 3 cut(s) | 65, 267, 443 |
| HpaII | CCGG | 1 cut(s) | 483 |
| HphI | GGTGA | 1 cut(s) | 517 |
| Hpy166II | GTNNAC | 1 cut(s) | 291 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 448 |
| Hpy188III | TCNNGA | 6 cut(s) | 77, 131, 302, 512, 584, 596 |
| Hpy8I | GTNNAC | 1 cut(s) | 291 |
| HpyAV | CCTTC | 3 cut(s) | 15, 275, 350 |
| HpyCH4III | ACNGT | 2 cut(s) | 263, 288 |
| HpyCH4V | TGCA | 2 cut(s) | 54, 242 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 536, 557 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 350, 399, 447 |
| Hsp92I | GRCGYC | 1 cut(s) | 387 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 380 |
| HspAI | GCGC | 1 cut(s) | 387 |
| KasI | GGCGCC | 1 cut(s) | 386 |
| Kzo9I | GATC | 3 cut(s) | 189, 580, 592 |
| LpnPI | CCDG | 4 cut(s) | 83, 90, 357, 496 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 83, 596 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 523 |
| MalI | GATC | 3 cut(s) | 191, 582, 594 |
| MboI | GATC | 3 cut(s) | 189, 580, 592 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 53, 220, 527, 590, 599 |
| MhlI | GDGCHC | 4 cut(s) | 218, 309, 496, 511 |
| MlsI | TGGCCA | 1 cut(s) | 375 |
| MluCI | AATT | 2 cut(s) | 173, 519 |
| MluNI | TGGCCA | 1 cut(s) | 375 |
| Mly113I | GGCGCC | 1 cut(s) | 387 |
| MlyI | GAGTC | 2 cut(s) | 59, 452 |
| MnlI | CCTC | 4 cut(s) | 113, 353, 379, 441 |
| Mox20I | TGGCCA | 1 cut(s) | 375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 375 |
| MseI | TTAA | 1 cut(s) | 159 |
| MslI | CAYNNNNRTG | 2 cut(s) | 381, 411 |
| Msp20I | TGGCCA | 1 cut(s) | 375 |
| MspI | CCGG | 1 cut(s) | 483 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 536, 557 |
| NarI | GGCGCC | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 189, 580, 592 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 380 |
| NlaIV | GGNNCC | 1 cut(s) | 388 |
| NmuCI | GTSAC | 2 cut(s) | 62, 523 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 267 |
| PleI | GAGTC | 2 cut(s) | 59, 451 |
| PluTI | GGCGCC | 1 cut(s) | 390 |
| PpsI | GAGTC | 2 cut(s) | 59, 451 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 511 |
| PspN4I | GGNNCC | 1 cut(s) | 388 |
| RseI | CAYNNNNRTG | 2 cut(s) | 381, 411 |
| SacI | GAGCTC | 2 cut(s) | 309, 511 |
| SaqAI | TTAA | 1 cut(s) | 159 |
| Sau3AI | GATC | 3 cut(s) | 189, 580, 592 |
| SchI | GAGTC | 2 cut(s) | 59, 452 |
| SduI | GDGCHC | 4 cut(s) | 218, 309, 496, 511 |
| SetI | ASST | 6 cut(s) | 84, 299, 309, 319, 511, 562 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfoI | GGCGCC | 1 cut(s) | 388 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 381, 411 |
| Sse9I | AATT | 2 cut(s) | 173, 519 |
| SsiI | CCGC | 1 cut(s) | 528 |
| SspDI | GGCGCC | 1 cut(s) | 386 |
| SspMI | CTAG | 2 cut(s) | 83, 596 |
| SstI | GAGCTC | 2 cut(s) | 309, 511 |
| TaaI | ACNGT | 2 cut(s) | 263, 288 |
| TaqI | TCGA | 3 cut(s) | 39, 265, 270 |
| TasI | AATT | 2 cut(s) | 173, 519 |
| TfiI | GAWTC | 1 cut(s) | 267 |
| Tru1I | TTAA | 1 cut(s) | 159 |
| Tru9I | TTAA | 1 cut(s) | 159 |
| TseFI | GTSAC | 2 cut(s) | 62, 523 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 523 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| XbaI | TCTAGA | 1 cut(s) | 595 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 24 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 83, 596 |