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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 2 cut(s) | 648, 806 |
| AccII | CGCG | 1 cut(s) | 327 |
| AciI | CCGC | 5 cut(s) | 83, 105, 325, 727, 948 |
| AclWI | GGATC | 3 cut(s) | 515, 585, 755 |
| AcoI | YGGCCR | 1 cut(s) | 793 |
| AcsI | RAATTY | 1 cut(s) | 392 |
| AcyI | GRCGYC | 2 cut(s) | 649, 807 |
| AdeI | CACNNNGTG | 2 cut(s) | 822, 988 |
| AgsI | TTSAA | 2 cut(s) | 340, 844 |
| AjiI | CACGTC | 2 cut(s) | 97, 211 |
| AluBI | AGCT | 6 cut(s) | 230, 236, 526, 536, 929, 980 |
| AluI | AGCT | 6 cut(s) | 230, 236, 526, 536, 929, 980 |
| Alw21I | GWGCWC | 1 cut(s) | 528 |
| Alw26I | GTCTC | 1 cut(s) | 460 |
| AlwI | GGATC | 3 cut(s) | 515, 585, 755 |
| AoxI | GGCC | 1 cut(s) | 793 |
| ApeKI | GCWGC | 3 cut(s) | 90, 102, 254 |
| ApoI | RAATTY | 1 cut(s) | 392 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 551, 583 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 369, 939 |
| AspLEI | GCGC | 3 cut(s) | 635, 651, 809 |
| AspS9I | GGNCC | 1 cut(s) | 695 |
| AsuHPI | GGTGA | 1 cut(s) | 937 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| BaeGI | GKGCMC | 1 cut(s) | 916 |
| BalI | TGGCCA | 1 cut(s) | 795 |
| BanI | GGYRCC | 2 cut(s) | 648, 806 |
| BanII | GRGCYC | 1 cut(s) | 528 |
| BbsI | GAAGAC | 1 cut(s) | 440 |
| Bbv12I | GWGCWC | 1 cut(s) | 528 |
| BbvI | GCAGC | 3 cut(s) | 102, 114, 266 |
| BccI | CCATC | 3 cut(s) | 290, 460, 834 |
| BciVI | GTATCC | 1 cut(s) | 670 |
| BclI | TGATCA | 1 cut(s) | 904 |
| BcoDI | GTCTC | 1 cut(s) | 460 |
| BfaI | CTAG | 1 cut(s) | 1016 |
| BfoI | RGCGCY | 2 cut(s) | 652, 810 |
| BfuI | GTATCC | 1 cut(s) | 670 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 263 |
| BisI | GCNGC | 3 cut(s) | 91, 103, 255 |
| BlsI | GCNGC | 3 cut(s) | 92, 104, 256 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmgBI | CACGTC | 2 cut(s) | 97, 211 |
| BmgT120I | GGNCC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 2 cut(s) | 650, 808 |
| BmrI | ACTGGG | 1 cut(s) | 919 |
| BmuI | ACTGGG | 1 cut(s) | 919 |
| BpiI | GAAGAC | 1 cut(s) | 440 |
| BpuEI | CTTGAG | 1 cut(s) | 216 |
| BsaHI | GRCGYC | 2 cut(s) | 649, 807 |
| BsaJI | CCNNGG | 1 cut(s) | 594 |
| Bse118I | RCCGGY | 1 cut(s) | 17 |
| Bse1I | ACTGG | 3 cut(s) | 125, 190, 914 |
| BseDI | CCNNGG | 1 cut(s) | 594 |
| BseGI | GGATG | 3 cut(s) | 147, 285, 313 |
| BseNI | ACTGG | 3 cut(s) | 125, 190, 914 |
| BseSI | GKGCMC | 1 cut(s) | 916 |
| BseXI | GCAGC | 3 cut(s) | 102, 114, 266 |
| Bsh1236I | CGCG | 1 cut(s) | 327 |
| BshFI | GGCC | 1 cut(s) | 795 |
| BshNI | GGYRCC | 2 cut(s) | 648, 806 |
| BsiHKAI | GWGCWC | 1 cut(s) | 528 |
| BsiSI | CCGG | 1 cut(s) | 18 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BsmAI | GTCTC | 1 cut(s) | 460 |
| BsmBI | CGTCTC | 1 cut(s) | 460 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsnI | GGCC | 1 cut(s) | 795 |
| Bsp1286I | GDGCHC | 2 cut(s) | 528, 916 |
| Bsp143I | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| BspACI | CCGC | 5 cut(s) | 83, 105, 325, 727, 948 |
| BspANI | GGCC | 1 cut(s) | 795 |
| BspFNI | CGCG | 1 cut(s) | 327 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 2 cut(s) | 650, 808 |
| BspPI | GGATC | 3 cut(s) | 515, 585, 755 |
| BspT107I | GGYRCC | 2 cut(s) | 648, 806 |
| BsrFI | RCCGGY | 1 cut(s) | 17 |
| BsrI | ACTGG | 3 cut(s) | 125, 190, 914 |
| BssAI | RCCGGY | 1 cut(s) | 17 |
| BssECI | CCNNGG | 1 cut(s) | 594 |
| BssMI | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| BssNI | GRCGYC | 2 cut(s) | 649, 807 |
| Bst4CI | ACNGT | 2 cut(s) | 134, 220 |
| Bst6I | CTCTTC | 1 cut(s) | 748 |
| BstACI | GRCGYC | 2 cut(s) | 649, 807 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 228 |
| BstDEI | CTNAG | 5 cut(s) | 259, 474, 639, 671, 819 |
| BstDSI | CCRYGG | 1 cut(s) | 594 |
| BstEII | GGTNACC | 1 cut(s) | 722 |
| BstF5I | GGATG | 3 cut(s) | 147, 285, 313 |
| BstFNI | CGCG | 1 cut(s) | 327 |
| BstH2I | RGCGCY | 2 cut(s) | 652, 810 |
| BstHHI | GCGC | 3 cut(s) | 635, 651, 809 |
| BstKTI | GATC | 7 cut(s) | 411, 510, 593, 750, 907, 1003, 1015 |
| BstMAI | GTCTC | 1 cut(s) | 460 |
| BstMBI | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 99, 263, 272, 956, 977 |
| BstPI | GGTNACC | 1 cut(s) | 722 |
| BstSLI | GKGCMC | 1 cut(s) | 916 |
| BstUI | CGCG | 1 cut(s) | 327 |
| BstV1I | GCAGC | 3 cut(s) | 102, 114, 266 |
| BstV2I | GAAGAC | 1 cut(s) | 440 |
| BstX2I | RGATCY | 1 cut(s) | 590 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 803 |
| BstYI | RGATCY | 1 cut(s) | 590 |
| BsuI | GTATCC | 1 cut(s) | 670 |
| BsuRI | GGCC | 1 cut(s) | 795 |
| BtgI | CCRYGG | 1 cut(s) | 594 |
| BtgZI | GCGATG | 1 cut(s) | 434 |
| BtrI | CACGTC | 2 cut(s) | 97, 211 |
| BtsCI | GGATG | 3 cut(s) | 147, 285, 313 |
| BtsIMutI | CAGTG | 2 cut(s) | 337, 907 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 228 |
| CciI | TCATGA | 1 cut(s) | 520 |
| CfoI | GCGC | 3 cut(s) | 635, 651, 809 |
| Cfr10I | RCCGGY | 1 cut(s) | 17 |
| Cfr13I | GGNCC | 1 cut(s) | 695 |
| CseI | GACGC | 2 cut(s) | 62, 316 |
| CviAII | CATG | 3 cut(s) | 521, 557, 797 |
| DdeI | CTNAG | 5 cut(s) | 259, 474, 639, 671, 819 |
| DinI | GGCGCC | 2 cut(s) | 650, 808 |
| DpnI | GATC | 7 cut(s) | 410, 509, 592, 749, 906, 1002, 1014 |
| DpnII | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| DraIII | CACNNNGTG | 2 cut(s) | 822, 988 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| EaeI | YGGCCR | 1 cut(s) | 793 |
| Eam1104I | CTCTTC | 1 cut(s) | 748 |
| EarI | CTCTTC | 1 cut(s) | 748 |
| Ecl136II | GAGCTC | 1 cut(s) | 526 |
| Eco24I | GRGCYC | 1 cut(s) | 528 |
| Eco32I | GATATC | 1 cut(s) | 197 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco53kI | GAGCTC | 1 cut(s) | 526 |
| Eco91I | GGTNACC | 1 cut(s) | 722 |
| EcoICRI | GAGCTC | 1 cut(s) | 526 |
| EcoO65I | GGTNACC | 1 cut(s) | 722 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| EcoRV | GATATC | 1 cut(s) | 197 |
| EcoT38I | GRGCYC | 1 cut(s) | 528 |
| EgeI | GGCGCC | 2 cut(s) | 650, 808 |
| EheI | GGCGCC | 2 cut(s) | 650, 808 |
| Esp3I | CGTCTC | 1 cut(s) | 460 |
| FaeI | CATG | 3 cut(s) | 524, 560, 800 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 3 cut(s) | 520, 556, 796 |
| FauNDI | CATATG | 2 cut(s) | 303, 920 |
| FbaI | TGATCA | 1 cut(s) | 904 |
| Fnu4HI | GCNGC | 3 cut(s) | 91, 103, 255 |
| FokI | GGATG | 3 cut(s) | 154, 272, 320 |
| FriOI | GRGCYC | 1 cut(s) | 528 |
| Fsp4HI | GCNGC | 3 cut(s) | 91, 103, 255 |
| FspBI | CTAG | 1 cut(s) | 1016 |
| GlaI | GCGC | 3 cut(s) | 634, 650, 808 |
| GluI | GCNGC | 3 cut(s) | 91, 103, 255 |
| HaeII | RGCGCY | 2 cut(s) | 652, 810 |
| HaeIII | GGCC | 1 cut(s) | 795 |
| HapII | CCGG | 1 cut(s) | 18 |
| HgaI | GACGC | 2 cut(s) | 62, 316 |
| HhaI | GCGC | 3 cut(s) | 635, 651, 809 |
| Hin1I | GRCGYC | 2 cut(s) | 649, 807 |
| Hin1II | CATG | 3 cut(s) | 524, 560, 800 |
| Hin6I | GCGC | 3 cut(s) | 633, 649, 807 |
| HinP1I | GCGC | 3 cut(s) | 633, 649, 807 |
| HincII | GTYRAC | 3 cut(s) | 110, 130, 761 |
| HindII | GTYRAC | 3 cut(s) | 110, 130, 761 |
| HindIII | AAGCTT | 1 cut(s) | 234 |
| HinfI | GANTC | 3 cut(s) | 295, 311, 436 |
| HpaII | CCGG | 1 cut(s) | 18 |
| HphI | GGTGA | 1 cut(s) | 937 |
| Hpy166II | GTNNAC | 3 cut(s) | 110, 130, 761 |
| Hpy188I | TCNGA | 3 cut(s) | 141, 752, 904 |
| Hpy188III | TCNNGA | 8 cut(s) | 192, 350, 521, 588, 684, 888, 1004, 1016 |
| Hpy8I | GTNNAC | 3 cut(s) | 110, 130, 761 |
| HpyAV | CCTTC | 3 cut(s) | 457, 639, 713 |
| HpyCH4III | ACNGT | 2 cut(s) | 134, 220 |
| HpyCH4IV | ACGT | 4 cut(s) | 96, 210, 688, 763 |
| HpyCH4V | TGCA | 1 cut(s) | 461 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 99, 263, 272, 956, 977 |
| HpyF3I | CTNAG | 5 cut(s) | 259, 474, 639, 671, 819 |
| HpySE526I | ACGT | 4 cut(s) | 96, 210, 688, 763 |
| Hsp92I | GRCGYC | 2 cut(s) | 649, 807 |
| Hsp92II | CATG | 3 cut(s) | 524, 560, 800 |
| HspAI | GCGC | 3 cut(s) | 633, 649, 807 |
| KasI | GGCGCC | 2 cut(s) | 648, 806 |
| Ksp22I | TGATCA | 1 cut(s) | 904 |
| Kzo9I | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| LmnI | GCTCC | 3 cut(s) | 175, 321, 533 |
| Lsp1109I | GCAGC | 3 cut(s) | 102, 114, 266 |
| MaeI | CTAG | 1 cut(s) | 1016 |
| MaeII | ACGT | 4 cut(s) | 96, 210, 688, 763 |
| MaeIII | GTNAC | 2 cut(s) | 146, 722 |
| MalI | GATC | 7 cut(s) | 410, 509, 592, 749, 906, 1002, 1014 |
| MboI | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| MboII | GAAGA | 8 cut(s) | 36, 254, 445, 586, 765, 947, 1010, 1019 |
| MflI | RGATCY | 1 cut(s) | 590 |
| MhlI | GDGCHC | 2 cut(s) | 528, 916 |
| MlsI | TGGCCA | 1 cut(s) | 795 |
| MluCI | AATT | 5 cut(s) | 158, 392, 486, 583, 622 |
| MluNI | TGGCCA | 1 cut(s) | 795 |
| Mly113I | GGCGCC | 2 cut(s) | 649, 807 |
| MlyI | GAGTC | 2 cut(s) | 289, 430 |
| MnlI | CCTC | 8 cut(s) | 256, 332, 749, 765, 769, 773, 799, 861 |
| Mox20I | TGGCCA | 1 cut(s) | 795 |
| MroXI | GAANNNNTTC | 2 cut(s) | 369, 939 |
| MscI | TGGCCA | 1 cut(s) | 795 |
| MseI | TTAA | 2 cut(s) | 378, 386 |
| MslI | CAYNNNNRTG | 5 cut(s) | 290, 306, 801, 831, 919 |
| Msp20I | TGGCCA | 1 cut(s) | 795 |
| MspA1I | CMGCKG | 1 cut(s) | 105 |
| MspI | CCGG | 1 cut(s) | 18 |
| MvnI | CGCG | 1 cut(s) | 327 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 99, 263, 272, 956, 977 |
| NarI | GGCGCC | 2 cut(s) | 649, 807 |
| NdeI | CATATG | 2 cut(s) | 303, 920 |
| NdeII | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| NlaIII | CATG | 3 cut(s) | 524, 560, 800 |
| NlaIV | GGNNCC | 2 cut(s) | 650, 808 |
| NmeAIII | GCCGAG | 1 cut(s) | 94 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PdmI | GAANNNNTTC | 2 cut(s) | 369, 939 |
| PfeI | GAWTC | 1 cut(s) | 311 |
| PkrI | GCNGC | 3 cut(s) | 92, 104, 256 |
| PleI | GAGTC | 2 cut(s) | 289, 430 |
| PluTI | GGCGCC | 2 cut(s) | 652, 810 |
| PpsI | GAGTC | 2 cut(s) | 289, 430 |
| Psp124BI | GAGCTC | 1 cut(s) | 528 |
| PspEI | GGTNACC | 1 cut(s) | 722 |
| PspN4I | GGNNCC | 2 cut(s) | 650, 808 |
| PspPI | GGNCC | 1 cut(s) | 695 |
| PsuI | RGATCY | 1 cut(s) | 590 |
| RseI | CAYNNNNRTG | 5 cut(s) | 290, 306, 801, 831, 919 |
| SacI | GAGCTC | 1 cut(s) | 528 |
| SaqAI | TTAA | 2 cut(s) | 378, 386 |
| SatI | GCNGC | 3 cut(s) | 91, 103, 255 |
| Sau3AI | GATC | 7 cut(s) | 408, 507, 590, 747, 904, 1000, 1012 |
| Sau96I | GGNCC | 1 cut(s) | 695 |
| SchI | GAGTC | 2 cut(s) | 289, 430 |
| SduI | GDGCHC | 2 cut(s) | 528, 916 |
| SfoI | GGCGCC | 2 cut(s) | 650, 808 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 290, 306, 801, 831, 919 |
| SmlI | CTYRAG | 1 cut(s) | 231 |
| SmoI | CTYRAG | 1 cut(s) | 231 |
| Sse9I | AATT | 5 cut(s) | 158, 392, 486, 583, 622 |
| SsiI | CCGC | 5 cut(s) | 83, 105, 325, 727, 948 |
| SspDI | GGCGCC | 2 cut(s) | 648, 806 |
| SspMI | CTAG | 1 cut(s) | 1016 |
| SstI | GAGCTC | 1 cut(s) | 528 |
| TaaI | ACNGT | 2 cut(s) | 134, 220 |
| TaiI | ACGT | 4 cut(s) | 99, 213, 691, 766 |
| TaqI | TCGA | 3 cut(s) | 484, 587, 889 |
| TasI | AATT | 5 cut(s) | 158, 392, 486, 583, 622 |
| TfiI | GAWTC | 1 cut(s) | 311 |
| Tru1I | TTAA | 2 cut(s) | 378, 386 |
| Tru9I | TTAA | 2 cut(s) | 378, 386 |
| TscAI | CASTG | 2 cut(s) | 337, 914 |
| TseI | GCWGC | 3 cut(s) | 90, 102, 254 |
| TspDTI | ATGAA | 2 cut(s) | 509, 554 |
| TspGWI | ACGGA | 3 cut(s) | 520, 583, 760 |
| TspRI | CASTG | 2 cut(s) | 337, 914 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XapI | RAATTY | 1 cut(s) | 392 |
| XbaI | TCTAGA | 1 cut(s) | 1015 |
| XmnI | GAANNNNTTC | 2 cut(s) | 369, 939 |
| XspI | CTAG | 1 cut(s) | 1016 |