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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 617 |
| AccBSI | CCGCTC | 1 cut(s) | 478 |
| AciI | CCGC | 3 cut(s) | 325, 478, 627 |
| AclI | AACGTT | 1 cut(s) | 354 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcvI | CACGTG | 1 cut(s) | 569 |
| AcyI | GRCGYC | 1 cut(s) | 648 |
| AfaI | GTAC | 1 cut(s) | 314 |
| AfeI | AGCGCT | 1 cut(s) | 86 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 210, 464, 465, 535, 617, 662 |
| AflIII | ACRYGT | 2 cut(s) | 566, 720 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 434 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 227 |
| AjiI | CACGTC | 1 cut(s) | 721 |
| AjnI | CCWGG | 1 cut(s) | 610 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 3 cut(s) | 170, 188, 368 |
| AluI | AGCT | 3 cut(s) | 170, 188, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AlwI | GGATC | 1 cut(s) | 335 |
| Aor51HI | AGCGCT | 1 cut(s) | 86 |
| AoxI | GGCC | 2 cut(s) | 598, 634 |
| AspLEI | GCGC | 3 cut(s) | 76, 87, 471 |
| AsuHPI | GGTGA | 2 cut(s) | 55, 320 |
| BanII | GRGCYC | 1 cut(s) | 610 |
| BauI | CACGAG | 1 cut(s) | 389 |
| BbrPI | CACGTG | 1 cut(s) | 569 |
| BceAI | ACGGC | 2 cut(s) | 585, 621 |
| BciT130I | CCWGG | 1 cut(s) | 612 |
| BciVI | GTATCC | 1 cut(s) | 301 |
| BclI | TGATCA | 1 cut(s) | 45 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 4 cut(s) | 57, 77, 660, 675 |
| BfoI | RGCGCY | 1 cut(s) | 88 |
| BfuI | GTATCC | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 627 |
| BlsI | GCNGC | 1 cut(s) | 628 |
| Bme1390I | CCNGG | 1 cut(s) | 612 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 227 |
| BmgBI | CACGTC | 1 cut(s) | 721 |
| BmiI | GGNNCC | 3 cut(s) | 482, 609, 625 |
| BmrFI | CCNGG | 1 cut(s) | 612 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BoxI | GACNNNNGTC | 1 cut(s) | 723 |
| BpmI | CTGGAG | 1 cut(s) | 594 |
| Bsa29I | ATCGAT | 1 cut(s) | 730 |
| BsaAI | YACGTR | 1 cut(s) | 569 |
| BsaHI | GRCGYC | 1 cut(s) | 648 |
| BsaJI | CCNNGG | 3 cut(s) | 601, 631, 637 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 210, 464, 465, 535, 617, 662 |
| Bse1I | ACTGG | 1 cut(s) | 227 |
| BseBI | CCWGG | 1 cut(s) | 612 |
| BseCI | ATCGAT | 1 cut(s) | 730 |
| BseDI | CCNNGG | 3 cut(s) | 601, 631, 637 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 210, 464, 465, 535, 617, 662 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseNI | ACTGG | 1 cut(s) | 227 |
| BseRI | GAGGAG | 2 cut(s) | 101, 609 |
| BseYI | CCCAGC | 1 cut(s) | 320 |
| BshFI | GGCC | 2 cut(s) | 600, 636 |
| BshVI | ATCGAT | 1 cut(s) | 730 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 210, 464, 465, 535, 617, 662 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsnI | GGCC | 2 cut(s) | 600, 636 |
| Bsp1286I | GDGCHC | 1 cut(s) | 610 |
| Bsp143I | GATC | 2 cut(s) | 45, 327 |
| BspACI | CCGC | 3 cut(s) | 325, 478, 627 |
| BspANI | GGCC | 2 cut(s) | 600, 636 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspDI | ATCGAT | 1 cut(s) | 730 |
| BspLI | GGNNCC | 3 cut(s) | 482, 609, 625 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BsrBI | CCGCTC | 1 cut(s) | 478 |
| BsrI | ACTGG | 1 cut(s) | 227 |
| BssECI | CCNNGG | 3 cut(s) | 601, 631, 637 |
| BssMI | GATC | 2 cut(s) | 45, 327 |
| BssNI | GRCGYC | 1 cut(s) | 648 |
| BssSI | CACGAG | 1 cut(s) | 389 |
| BssT1I | CCWWGG | 1 cut(s) | 631 |
| Bst2BI | CACGAG | 1 cut(s) | 389 |
| Bst2UI | CCWGG | 1 cut(s) | 612 |
| Bst4CI | ACNGT | 1 cut(s) | 548 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 1 cut(s) | 648 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 686 |
| BstBAI | YACGTR | 1 cut(s) | 569 |
| BstDEI | CTNAG | 2 cut(s) | 277, 423 |
| BstDSI | CCRYGG | 2 cut(s) | 601, 637 |
| BstEII | GGTNACC | 1 cut(s) | 542 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 533 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstH2I | RGCGCY | 1 cut(s) | 88 |
| BstHHI | GCGC | 3 cut(s) | 76, 87, 471 |
| BstKTI | GATC | 2 cut(s) | 48, 330 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 2 cut(s) | 45, 327 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 475, 686 |
| BstNI | CCWGG | 1 cut(s) | 612 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 723 |
| BstPI | GGTNACC | 1 cut(s) | 542 |
| BstSCI | CCNGG | 1 cut(s) | 610 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 638 |
| Bsu15I | ATCGAT | 1 cut(s) | 730 |
| BsuI | GTATCC | 1 cut(s) | 301 |
| BsuRI | GGCC | 2 cut(s) | 600, 636 |
| BsuTUI | ATCGAT | 1 cut(s) | 730 |
| BtgI | CCRYGG | 2 cut(s) | 601, 637 |
| BtrI | CACGTC | 1 cut(s) | 721 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| CfoI | GCGC | 3 cut(s) | 76, 87, 471 |
| ClaI | ATCGAT | 1 cut(s) | 730 |
| CseI | GACGC | 1 cut(s) | 637 |
| Csp6I | GTAC | 1 cut(s) | 313 |
| CviAII | CATG | 5 cut(s) | 13, 40, 205, 377, 579 |
| CviJI | RGCY | 8 cut(s) | 170, 188, 368, 412, 600, 608, 626, 636 |
| CviKI_1 | RGCY | 8 cut(s) | 170, 188, 368, 412, 600, 608, 626, 636 |
| CviQI | GTAC | 1 cut(s) | 313 |
| DdeI | CTNAG | 2 cut(s) | 277, 423 |
| DpnI | GATC | 2 cut(s) | 47, 329 |
| DpnII | GATC | 2 cut(s) | 45, 327 |
| DriI | GACNNNNNGTC | 1 cut(s) | 227 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 227 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| EciI | GGCGGA | 1 cut(s) | 340 |
| Eco130I | CCWWGG | 1 cut(s) | 631 |
| Eco24I | GRGCYC | 1 cut(s) | 610 |
| Eco47III | AGCGCT | 1 cut(s) | 86 |
| Eco72I | CACGTG | 1 cut(s) | 569 |
| Eco91I | GGTNACC | 1 cut(s) | 542 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 533 |
| EcoO65I | GGTNACC | 1 cut(s) | 542 |
| EcoRII | CCWGG | 1 cut(s) | 610 |
| EcoT14I | CCWWGG | 1 cut(s) | 631 |
| EcoT38I | GRGCYC | 1 cut(s) | 610 |
| ErhI | CCWWGG | 1 cut(s) | 631 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 16, 43, 208, 380, 582 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 5 cut(s) | 12, 39, 204, 376, 578 |
| FauNDI | CATATG | 1 cut(s) | 342 |
| FbaI | TGATCA | 1 cut(s) | 45 |
| Fnu4HI | GCNGC | 1 cut(s) | 627 |
| FokI | GGATG | 1 cut(s) | 65 |
| FriOI | GRGCYC | 1 cut(s) | 610 |
| Fsp4HI | GCNGC | 1 cut(s) | 627 |
| FspBI | CTAG | 4 cut(s) | 57, 77, 660, 675 |
| GlaI | GCGC | 3 cut(s) | 75, 86, 470 |
| GluI | GCNGC | 1 cut(s) | 627 |
| GsaI | CCCAGC | 1 cut(s) | 324 |
| GsuI | CTGGAG | 1 cut(s) | 594 |
| HaeII | RGCGCY | 1 cut(s) | 88 |
| HaeIII | GGCC | 2 cut(s) | 600, 636 |
| HgaI | GACGC | 1 cut(s) | 637 |
| HhaI | GCGC | 3 cut(s) | 76, 87, 471 |
| Hin1I | GRCGYC | 1 cut(s) | 648 |
| Hin1II | CATG | 5 cut(s) | 16, 43, 208, 380, 582 |
| Hin6I | GCGC | 3 cut(s) | 74, 85, 469 |
| HinP1I | GCGC | 3 cut(s) | 74, 85, 469 |
| HinfI | GANTC | 2 cut(s) | 104, 147 |
| HphI | GGTGA | 2 cut(s) | 55, 320 |
| Hpy188I | TCNGA | 4 cut(s) | 29, 184, 419, 552 |
| Hpy188III | TCNNGA | 2 cut(s) | 391, 660 |
| HpyAV | CCTTC | 4 cut(s) | 277, 458, 533, 551 |
| HpyCH4III | ACNGT | 1 cut(s) | 548 |
| HpyCH4IV | ACGT | 5 cut(s) | 354, 508, 568, 586, 720 |
| HpyCH4V | TGCA | 3 cut(s) | 455, 680, 689 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 475, 686 |
| HpyF3I | CTNAG | 2 cut(s) | 277, 423 |
| HpySE526I | ACGT | 5 cut(s) | 354, 508, 568, 586, 720 |
| Hsp92I | GRCGYC | 1 cut(s) | 648 |
| Hsp92II | CATG | 5 cut(s) | 16, 43, 208, 380, 582 |
| HspAI | GCGC | 3 cut(s) | 74, 85, 469 |
| Ksp22I | TGATCA | 1 cut(s) | 45 |
| Kzo9I | GATC | 2 cut(s) | 45, 327 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 4 cut(s) | 135, 475, 613, 623 |
| LpnPI | CCDG | 6 cut(s) | 129, 240, 306, 393, 597, 624 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 4 cut(s) | 57, 77, 660, 675 |
| MaeII | ACGT | 5 cut(s) | 354, 508, 568, 586, 720 |
| MaeIII | GTNAC | 2 cut(s) | 542, 569 |
| MalI | GATC | 2 cut(s) | 47, 329 |
| MbiI | CCGCTC | 1 cut(s) | 478 |
| MboI | GATC | 2 cut(s) | 45, 327 |
| MboII | GAAGA | 3 cut(s) | 92, 406, 446 |
| MhlI | GDGCHC | 1 cut(s) | 610 |
| MluCI | AATT | 9 cut(s) | 62, 178, 246, 282, 298, 397, 403, 442, 695 |
| MmeI | TCCRAC | 1 cut(s) | 397 |
| MseI | TTAA | 1 cut(s) | 698 |
| MslI | CAYNNNNRTG | 1 cut(s) | 732 |
| MspR9I | CCNGG | 1 cut(s) | 612 |
| MvaI | CCWGG | 1 cut(s) | 612 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 475, 686 |
| NdeI | CATATG | 1 cut(s) | 342 |
| NdeII | GATC | 2 cut(s) | 45, 327 |
| NlaIII | CATG | 5 cut(s) | 16, 43, 208, 380, 582 |
| NlaIV | GGNNCC | 3 cut(s) | 482, 609, 625 |
| NmuCI | GTSAC | 1 cut(s) | 569 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 2 cut(s) | 104, 147 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 617 |
| PfoI | TCCNGGA | 1 cut(s) | 610 |
| PkrI | GCNGC | 1 cut(s) | 628 |
| PmaCI | CACGTG | 1 cut(s) | 569 |
| PmlI | CACGTG | 1 cut(s) | 569 |
| Ppu21I | YACGTR | 1 cut(s) | 569 |
| PshAI | GACNNNNGTC | 1 cut(s) | 723 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| Psp1406I | AACGTT | 1 cut(s) | 354 |
| Psp6I | CCWGG | 1 cut(s) | 610 |
| PspCI | CACGTG | 1 cut(s) | 569 |
| PspEI | GGTNACC | 1 cut(s) | 542 |
| PspFI | CCCAGC | 1 cut(s) | 320 |
| PspGI | CCWGG | 1 cut(s) | 610 |
| PspN4I | GGNNCC | 3 cut(s) | 482, 609, 625 |
| RsaI | GTAC | 1 cut(s) | 314 |
| RsaNI | GTAC | 1 cut(s) | 313 |
| RseI | CAYNNNNRTG | 1 cut(s) | 732 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 698 |
| SatI | GCNGC | 1 cut(s) | 627 |
| Sau3AI | GATC | 2 cut(s) | 45, 327 |
| ScrFI | CCNGG | 1 cut(s) | 612 |
| SduI | GDGCHC | 1 cut(s) | 610 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 732 |
| Sse9I | AATT | 9 cut(s) | 62, 178, 246, 282, 298, 397, 403, 442, 695 |
| SsiI | CCGC | 3 cut(s) | 325, 478, 627 |
| SspMI | CTAG | 4 cut(s) | 57, 77, 660, 675 |
| StyD4I | CCNGG | 1 cut(s) | 610 |
| StyI | CCWWGG | 1 cut(s) | 631 |
| TaaI | ACNGT | 1 cut(s) | 548 |
| TaiI | ACGT | 5 cut(s) | 357, 511, 571, 589, 723 |
| TaqI | TCGA | 1 cut(s) | 730 |
| TasI | AATT | 9 cut(s) | 62, 178, 246, 282, 298, 397, 403, 442, 695 |
| TatI | WGTACW | 1 cut(s) | 312 |
| TauI | GCSGC | 1 cut(s) | 629 |
| TfiI | GAWTC | 2 cut(s) | 104, 147 |
| Tru1I | TTAA | 1 cut(s) | 698 |
| Tru9I | TTAA | 1 cut(s) | 698 |
| TseFI | GTSAC | 1 cut(s) | 569 |
| Tsp45I | GTSAC | 1 cut(s) | 569 |
| TspDTI | ATGAA | 4 cut(s) | 17, 329, 507, 570 |
| TspGWI | ACGGA | 1 cut(s) | 154 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 617 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 533 |
| XbaI | TCTAGA | 1 cut(s) | 659 |
| XspI | CTAG | 4 cut(s) | 57, 77, 660, 675 |