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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 473 |
| AccB1I | GGYRCC | 2 cut(s) | 428, 586 |
| AccII | CGCG | 1 cut(s) | 413 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 573 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 429, 587 |
| AfaI | GTAC | 1 cut(s) | 184 |
| AgsI | TTSAA | 2 cut(s) | 121, 314 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 3 cut(s) | 228, 307, 317 |
| AluI | AGCT | 3 cut(s) | 228, 307, 317 |
| Alw21I | GWGCWC | 1 cut(s) | 309 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 366 |
| AoxI | GGCC | 2 cut(s) | 517, 573 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| AspLEI | GCGC | 3 cut(s) | 415, 431, 589 |
| AsuHPI | GGTGA | 1 cut(s) | 74 |
| BalI | TGGCCA | 1 cut(s) | 575 |
| BanI | GGYRCC | 2 cut(s) | 428, 586 |
| BanII | GRGCYC | 2 cut(s) | 18, 309 |
| BbsI | GAAGAC | 1 cut(s) | 221 |
| Bbv12I | GWGCWC | 1 cut(s) | 309 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BciVI | GTATCC | 1 cut(s) | 450 |
| BclI | TGATCA | 1 cut(s) | 288 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 2 cut(s) | 83, 225 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 432, 590 |
| BfuI | GTATCC | 1 cut(s) | 450 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 22 |
| BmiI | GGNNCC | 2 cut(s) | 430, 588 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 221 |
| BsaHI | GRCGYC | 2 cut(s) | 429, 587 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BseMII | CTCAG | 1 cut(s) | 80 |
| BseRI | GAGGAG | 1 cut(s) | 95 |
| Bsh1236I | CGCG | 1 cut(s) | 413 |
| BshFI | GGCC | 2 cut(s) | 519, 575 |
| BshNI | GGYRCC | 2 cut(s) | 428, 586 |
| BsiHKAI | GWGCWC | 1 cut(s) | 309 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 2 cut(s) | 519, 575 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 309 |
| Bsp143I | GATC | 3 cut(s) | 189, 288, 371 |
| BspANI | GGCC | 2 cut(s) | 519, 575 |
| BspCNI | CTCAG | 1 cut(s) | 81 |
| BspFNI | CGCG | 1 cut(s) | 413 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 430, 588 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspQI | GCTCTTC | 1 cut(s) | 6 |
| BspT107I | GGYRCC | 2 cut(s) | 428, 586 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssMI | GATC | 3 cut(s) | 189, 288, 371 |
| BssNI | GRCGYC | 2 cut(s) | 429, 587 |
| Bst6I | CTCTTC | 3 cut(s) | 6, 113, 528 |
| BstACI | GRCGYC | 2 cut(s) | 429, 587 |
| BstDEI | CTNAG | 5 cut(s) | 89, 255, 451, 494, 599 |
| BstFNI | CGCG | 1 cut(s) | 413 |
| BstH2I | RGCGCY | 2 cut(s) | 432, 590 |
| BstHHI | GCGC | 3 cut(s) | 415, 431, 589 |
| BstKTI | GATC | 3 cut(s) | 192, 291, 374 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 3 cut(s) | 189, 288, 371 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 22, 435 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstUI | CGCG | 1 cut(s) | 413 |
| BstV2I | GAAGAC | 1 cut(s) | 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 583 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| BsuI | GTATCC | 1 cut(s) | 450 |
| BsuRI | GGCC | 2 cut(s) | 519, 575 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 3 cut(s) | 415, 431, 589 |
| Csp6I | GTAC | 1 cut(s) | 183 |
| CviAII | CATG | 3 cut(s) | 302, 338, 577 |
| CviQI | GTAC | 1 cut(s) | 183 |
| DdeI | CTNAG | 5 cut(s) | 89, 255, 451, 494, 599 |
| DinI | GGCGCC | 2 cut(s) | 430, 588 |
| DpnI | GATC | 3 cut(s) | 191, 290, 373 |
| DpnII | GATC | 3 cut(s) | 189, 288, 371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 473 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 473 |
| EaeI | YGGCCR | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 3 cut(s) | 6, 113, 528 |
| EarI | CTCTTC | 3 cut(s) | 6, 113, 528 |
| Ecl136II | GAGCTC | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 2 cut(s) | 18, 309 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 307 |
| EcoICRI | GAGCTC | 1 cut(s) | 307 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 2 cut(s) | 18, 309 |
| EgeI | GGCGCC | 2 cut(s) | 430, 588 |
| EheI | GGCGCC | 2 cut(s) | 430, 588 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 3 cut(s) | 305, 341, 580 |
| FatI | CATG | 3 cut(s) | 301, 337, 576 |
| FbaI | TGATCA | 1 cut(s) | 288 |
| FriOI | GRGCYC | 2 cut(s) | 18, 309 |
| FspBI | CTAG | 2 cut(s) | 83, 225 |
| GlaI | GCGC | 3 cut(s) | 414, 430, 588 |
| HaeII | RGCGCY | 2 cut(s) | 432, 590 |
| HaeIII | GGCC | 2 cut(s) | 519, 575 |
| HhaI | GCGC | 3 cut(s) | 415, 431, 589 |
| Hin1I | GRCGYC | 2 cut(s) | 429, 587 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 580 |
| Hin6I | GCGC | 3 cut(s) | 413, 429, 587 |
| HinP1I | GCGC | 3 cut(s) | 413, 429, 587 |
| HincII | GTYRAC | 1 cut(s) | 541 |
| HindII | GTYRAC | 1 cut(s) | 541 |
| HinfI | GANTC | 5 cut(s) | 65, 73, 217, 267, 397 |
| HphI | GGTGA | 1 cut(s) | 74 |
| Hpy166II | GTNNAC | 1 cut(s) | 541 |
| Hpy188I | TCNGA | 1 cut(s) | 396 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 302, 369, 464 |
| Hpy8I | GTNNAC | 1 cut(s) | 541 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 468, 543 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 22, 435 |
| HpyF3I | CTNAG | 5 cut(s) | 89, 255, 451, 494, 599 |
| HpySE526I | ACGT | 3 cut(s) | 57, 468, 543 |
| Hsp92I | GRCGYC | 2 cut(s) | 429, 587 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 580 |
| HspAI | GCGC | 3 cut(s) | 413, 429, 587 |
| KasI | GGCGCC | 2 cut(s) | 428, 586 |
| Ksp22I | TGATCA | 1 cut(s) | 288 |
| Kzo9I | GATC | 3 cut(s) | 189, 288, 371 |
| LguI | GCTCTTC | 1 cut(s) | 6 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| LpnPI | CCDG | 5 cut(s) | 83, 267, 449, 458, 557 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 2 cut(s) | 83, 225 |
| MaeII | ACGT | 3 cut(s) | 57, 468, 543 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 502 |
| MalI | GATC | 3 cut(s) | 191, 290, 373 |
| MboI | GATC | 3 cut(s) | 189, 288, 371 |
| MboII | GAAGA | 7 cut(s) | 20, 23, 53, 100, 226, 367, 545 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 2 cut(s) | 18, 309 |
| MlsI | TGGCCA | 1 cut(s) | 575 |
| MluCI | AATT | 3 cut(s) | 173, 358, 402 |
| MluNI | TGGCCA | 1 cut(s) | 575 |
| Mly113I | GGCGCC | 2 cut(s) | 429, 587 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 7 cut(s) | 113, 116, 418, 529, 549, 553, 579 |
| Mox20I | TGGCCA | 1 cut(s) | 575 |
| MscI | TGGCCA | 1 cut(s) | 575 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| Msp20I | TGGCCA | 1 cut(s) | 575 |
| MvnI | CGCG | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 22, 435 |
| NarI | GGCGCC | 2 cut(s) | 429, 587 |
| NdeII | GATC | 3 cut(s) | 189, 288, 371 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 580 |
| NlaIV | GGNNCC | 2 cut(s) | 430, 588 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PciSI | GCTCTTC | 1 cut(s) | 6 |
| PfeI | GAWTC | 3 cut(s) | 73, 267, 397 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 2 cut(s) | 432, 590 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 2 cut(s) | 430, 588 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RsaI | GTAC | 1 cut(s) | 184 |
| RsaNI | GTAC | 1 cut(s) | 183 |
| RseI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| SacI | GAGCTC | 1 cut(s) | 309 |
| SapI | GCTCTTC | 1 cut(s) | 6 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 3 cut(s) | 189, 288, 371 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 2 cut(s) | 18, 309 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 2 cut(s) | 430, 588 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 350, 581 |
| Sse9I | AATT | 3 cut(s) | 173, 358, 402 |
| SspDI | GGCGCC | 2 cut(s) | 428, 586 |
| SspMI | CTAG | 2 cut(s) | 83, 225 |
| SstI | GAGCTC | 1 cut(s) | 309 |
| TaiI | ACGT | 3 cut(s) | 60, 471, 546 |
| TaqI | TCGA | 3 cut(s) | 39, 265, 368 |
| TasI | AATT | 3 cut(s) | 173, 358, 402 |
| TfiI | GAWTC | 3 cut(s) | 73, 267, 397 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 364, 398 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XspI | CTAG | 2 cut(s) | 83, 225 |