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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 512 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AcuI | CTGAAG | 1 cut(s) | 305 |
| AfaI | GTAC | 2 cut(s) | 38, 168 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| AflIII | ACRYGT | 1 cut(s) | 582 |
| AjiI | CACGTC | 1 cut(s) | 453 |
| AluBI | AGCT | 3 cut(s) | 64, 346, 368 |
| AluI | AGCT | 3 cut(s) | 64, 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 146, 178 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| AspA2I | CCTAGG | 1 cut(s) | 458 |
| AspLEI | GCGC | 1 cut(s) | 25 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| AvrII | CCTAGG | 1 cut(s) | 458 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 126, 236 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 4 cut(s) | 57, 408, 459, 512 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlnI | CCTAGG | 1 cut(s) | 458 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgBI | CACGTC | 1 cut(s) | 453 |
| BmiI | GGNNCC | 3 cut(s) | 355, 420, 568 |
| BmsI | GCATC | 2 cut(s) | 231, 336 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 38, 70 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 3 cut(s) | 357, 458, 570 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 3 cut(s) | 357, 458, 570 |
| BseGI | GGATG | 1 cut(s) | 501 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseRI | GAGGAG | 1 cut(s) | 62 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BslFI | GGGAC | 1 cut(s) | 439 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 46, 463, 534 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 439 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| Bsp19I | CCATGG | 2 cut(s) | 357, 570 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspHI | TCATGA | 1 cut(s) | 330 |
| BspLI | GGNNCC | 3 cut(s) | 355, 420, 568 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 3 cut(s) | 357, 458, 570 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 3 cut(s) | 357, 458, 570 |
| BstDEI | CTNAG | 1 cut(s) | 369 |
| BstDSI | CCRYGG | 2 cut(s) | 357, 570 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 1 cut(s) | 501 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstHHI | GCGC | 1 cut(s) | 25 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstNSI | RCATGY | 1 cut(s) | 586 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BtgI | CCRYGG | 2 cut(s) | 357, 570 |
| BtrI | CACGTC | 1 cut(s) | 453 |
| BtsCI | GGATG | 1 cut(s) | 501 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| CciI | TCATGA | 1 cut(s) | 330 |
| CfoI | GCGC | 1 cut(s) | 25 |
| CseI | GACGC | 3 cut(s) | 29, 333, 476 |
| Csp6I | GTAC | 2 cut(s) | 37, 167 |
| CviAII | CATG | 6 cut(s) | 13, 331, 358, 563, 571, 583 |
| CviJI | RGCY | 6 cut(s) | 64, 141, 188, 346, 368, 548 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 141, 188, 346, 368, 548 |
| CviQI | GTAC | 2 cut(s) | 37, 167 |
| DdeI | CTNAG | 1 cut(s) | 369 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 512 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 3 cut(s) | 357, 458, 570 |
| Eco57I | CTGAAG | 1 cut(s) | 305 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoT14I | CCWWGG | 3 cut(s) | 357, 458, 570 |
| ErhI | CCWWGG | 3 cut(s) | 357, 458, 570 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 6 cut(s) | 16, 334, 361, 566, 574, 586 |
| FaqI | GGGAC | 1 cut(s) | 439 |
| FatI | CATG | 6 cut(s) | 12, 330, 357, 562, 570, 582 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FokI | GGATG | 1 cut(s) | 508 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 4 cut(s) | 57, 408, 459, 512 |
| GlaI | GCGC | 1 cut(s) | 24 |
| GluI | GCNGC | 1 cut(s) | 83 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HgaI | GACGC | 3 cut(s) | 29, 333, 476 |
| HhaI | GCGC | 1 cut(s) | 25 |
| Hin1II | CATG | 6 cut(s) | 16, 334, 361, 566, 574, 586 |
| Hin6I | GCGC | 1 cut(s) | 23 |
| HinP1I | GCGC | 1 cut(s) | 23 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HinfI | GANTC | 3 cut(s) | 53, 104, 436 |
| Hpy166II | GTNNAC | 1 cut(s) | 580 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 8 cut(s) | 28, 57, 116, 250, 331, 341, 408, 433 |
| Hpy8I | GTNNAC | 1 cut(s) | 580 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 363, 452 |
| HpyCH4V | TGCA | 2 cut(s) | 293, 320 |
| HpyF3I | CTNAG | 1 cut(s) | 369 |
| HpySE526I | ACGT | 3 cut(s) | 96, 363, 452 |
| Hsp92II | CATG | 6 cut(s) | 16, 334, 361, 566, 574, 586 |
| HspAI | GCGC | 1 cut(s) | 23 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 3 cut(s) | 30, 343, 474 |
| LpnPI | CCDG | 5 cut(s) | 41, 122, 129, 326, 446 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 2 cut(s) | 231, 336 |
| MaeI | CTAG | 4 cut(s) | 57, 408, 459, 512 |
| MaeII | ACGT | 3 cut(s) | 96, 363, 452 |
| MaeIII | GTNAC | 3 cut(s) | 101, 152, 448 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 4 cut(s) | 265, 298, 406, 550 |
| MluCI | AATT | 4 cut(s) | 178, 298, 348, 441 |
| MlyI | GAGTC | 3 cut(s) | 47, 98, 445 |
| MnlI | CCTC | 7 cut(s) | 40, 43, 152, 327, 457, 528, 568 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MseI | TTAA | 2 cut(s) | 42, 159 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| MvnI | CGCG | 1 cut(s) | 23 |
| NcoI | CCATGG | 2 cut(s) | 357, 570 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 6 cut(s) | 16, 334, 361, 566, 574, 586 |
| NlaIV | GGNNCC | 3 cut(s) | 355, 420, 568 |
| NmuCI | GTSAC | 3 cut(s) | 101, 152, 448 |
| NspI | RCATGY | 1 cut(s) | 586 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 1 cut(s) | 330 |
| PciI | ACATGT | 1 cut(s) | 582 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 474 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 3 cut(s) | 47, 98, 444 |
| PpsI | GAGTC | 3 cut(s) | 47, 98, 444 |
| PscI | ACATGT | 1 cut(s) | 582 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 3 cut(s) | 355, 420, 568 |
| PspXI | VCTCGAGB | 1 cut(s) | 77 |
| RsaI | GTAC | 2 cut(s) | 38, 168 |
| RsaNI | GTAC | 2 cut(s) | 37, 167 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SaqAI | TTAA | 2 cut(s) | 42, 159 |
| SatI | GCNGC | 1 cut(s) | 83 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| SchI | GAGTC | 3 cut(s) | 47, 98, 445 |
| SfaNI | GCATC | 2 cut(s) | 231, 336 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 4 cut(s) | 178, 298, 348, 441 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspMI | CTAG | 4 cut(s) | 57, 408, 459, 512 |
| StyI | CCWWGG | 3 cut(s) | 357, 458, 570 |
| TaiI | ACGT | 3 cut(s) | 99, 366, 455 |
| TaqI | TCGA | 2 cut(s) | 78, 249 |
| TasI | AATT | 4 cut(s) | 178, 298, 348, 441 |
| Tru1I | TTAA | 2 cut(s) | 42, 159 |
| Tru9I | TTAA | 2 cut(s) | 42, 159 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TseFI | GTSAC | 3 cut(s) | 101, 152, 448 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 3 cut(s) | 101, 152, 448 |
| TspDTI | ATGAA | 1 cut(s) | 29 |
| TspRI | CASTG | 1 cut(s) | 238 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XbaI | TCTAGA | 2 cut(s) | 56, 407 |
| XceI | RCATGY | 1 cut(s) | 586 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmaJI | CCTAGG | 1 cut(s) | 458 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |
| XspI | CTAG | 4 cut(s) | 57, 408, 459, 512 |