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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 553 |
| AciI | CCGC | 2 cut(s) | 79, 265 |
| AclWI | GGATC | 2 cut(s) | 455, 525 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AgsI | TTSAA | 2 cut(s) | 13, 280 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 466, 476, 585 |
| AluI | AGCT | 5 cut(s) | 155, 161, 466, 476, 585 |
| Alw21I | GWGCWC | 2 cut(s) | 468, 587 |
| Alw26I | GTCTC | 2 cut(s) | 196, 400 |
| AlwI | GGATC | 2 cut(s) | 455, 525 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 553 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 309, 549 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 2 cut(s) | 468, 587 |
| BauI | CACGAG | 1 cut(s) | 586 |
| BbsI | GAAGAC | 1 cut(s) | 380 |
| Bbv12I | GWGCWC | 2 cut(s) | 468, 587 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 1 cut(s) | 246 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 196, 400 |
| BfaI | CTAG | 3 cut(s) | 96, 126, 242 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 346 |
| BpiI | GAAGAC | 1 cut(s) | 380 |
| BpmI | CTGGAG | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 534 |
| BsaWI | WCCGGW | 1 cut(s) | 553 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseAI | TCCGGA | 1 cut(s) | 553 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 534 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 2 cut(s) | 468, 587 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BsmAI | GTCTC | 2 cut(s) | 196, 400 |
| BsmBI | CGTCTC | 1 cut(s) | 400 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 468, 587 |
| Bsp13I | TCCGGA | 1 cut(s) | 553 |
| Bsp143I | GATC | 3 cut(s) | 348, 447, 530 |
| BspACI | CCGC | 2 cut(s) | 79, 265 |
| BspEI | TCCGGA | 1 cut(s) | 553 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BspPI | GGATC | 2 cut(s) | 455, 525 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 534 |
| BssMI | GATC | 3 cut(s) | 348, 447, 530 |
| BssSI | CACGAG | 1 cut(s) | 586 |
| Bst2BI | CACGAG | 1 cut(s) | 586 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 184, 414, 579 |
| BstDSI | CCRYGG | 1 cut(s) | 534 |
| BstKTI | GATC | 3 cut(s) | 351, 450, 533 |
| BstMAI | GTCTC | 2 cut(s) | 196, 400 |
| BstMBI | GATC | 3 cut(s) | 348, 447, 530 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 380 |
| BstX2I | RGATCY | 1 cut(s) | 530 |
| BstYI | RGATCY | 1 cut(s) | 530 |
| BtgI | CCRYGG | 1 cut(s) | 534 |
| BtgZI | GCGATG | 1 cut(s) | 374 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 460 |
| CviAII | CATG | 2 cut(s) | 461, 497 |
| DdeI | CTNAG | 3 cut(s) | 184, 414, 579 |
| DpnI | GATC | 3 cut(s) | 350, 449, 532 |
| DpnII | GATC | 3 cut(s) | 348, 447, 530 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 466, 585 |
| Eco24I | GRGCYC | 2 cut(s) | 468, 587 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco32I | GATATC | 2 cut(s) | 56, 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 466, 585 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 2 cut(s) | 466, 585 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 468, 587 |
| Esp3I | CGTCTC | 1 cut(s) | 400 |
| FaeI | CATG | 2 cut(s) | 464, 500 |
| FaiI | YATR | 8 cut(s) | 113, 258, 297, 462, 479, 498, 522, 567 |
| FatI | CATG | 2 cut(s) | 460, 496 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FriOI | GRGCYC | 2 cut(s) | 468, 587 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 96, 126, 242 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 141 |
| HapII | CCGG | 1 cut(s) | 554 |
| Hin1II | CATG | 2 cut(s) | 464, 500 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 224, 376, 557 |
| HpaII | CCGG | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 1 cut(s) | 304 |
| Hpy188III | TCNNGA | 9 cut(s) | 51, 71, 119, 236, 290, 461, 528, 554, 588 |
| HpyAV | CCTTC | 1 cut(s) | 397 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 216, 547 |
| HpyCH4V | TGCA | 2 cut(s) | 401, 440 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 414, 579 |
| HpySE526I | ACGT | 3 cut(s) | 135, 216, 547 |
| Hsp92II | CATG | 2 cut(s) | 464, 500 |
| Kpn2I | TCCGGA | 1 cut(s) | 553 |
| Kzo9I | GATC | 3 cut(s) | 348, 447, 530 |
| LmnI | GCTCC | 2 cut(s) | 34, 160 |
| LpnPI | CCDG | 8 cut(s) | 30, 36, 46, 116, 143, 171, 249, 567 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 346 |
| MaeI | CTAG | 3 cut(s) | 96, 126, 242 |
| MaeII | ACGT | 3 cut(s) | 135, 216, 547 |
| MaeIII | GTNAC | 2 cut(s) | 5, 221 |
| MalI | GATC | 3 cut(s) | 350, 449, 532 |
| MboI | GATC | 3 cut(s) | 348, 447, 530 |
| MboII | GAAGA | 3 cut(s) | 212, 385, 526 |
| MflI | RGATCY | 1 cut(s) | 530 |
| MhlI | GDGCHC | 2 cut(s) | 468, 587 |
| MluCI | AATT | 4 cut(s) | 17, 332, 523, 562 |
| MlyI | GAGTC | 2 cut(s) | 218, 370 |
| MnlI | CCTC | 4 cut(s) | 92, 181, 272, 586 |
| MroI | TCCGGA | 1 cut(s) | 553 |
| MroXI | GAANNNNTTC | 2 cut(s) | 309, 549 |
| MseI | TTAA | 2 cut(s) | 318, 326 |
| MspI | CCGG | 1 cut(s) | 554 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NdeII | GATC | 3 cut(s) | 348, 447, 530 |
| NlaIII | CATG | 2 cut(s) | 464, 500 |
| NmuCI | GTSAC | 1 cut(s) | 221 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PdmI | GAANNNNTTC | 2 cut(s) | 309, 549 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 557 |
| PflFI | GACNNNGTC | 1 cut(s) | 215 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 218, 370 |
| PpsI | GAGTC | 2 cut(s) | 218, 370 |
| Psp124BI | GAGCTC | 2 cut(s) | 468, 587 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PsuI | RGATCY | 1 cut(s) | 530 |
| PsyI | GACNNNGTC | 1 cut(s) | 215 |
| SacI | GAGCTC | 2 cut(s) | 468, 587 |
| SaqAI | TTAA | 2 cut(s) | 318, 326 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 348, 447, 530 |
| SchI | GAGTC | 2 cut(s) | 218, 370 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 468, 587 |
| SfaNI | GCATC | 1 cut(s) | 346 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 17, 332, 523, 562 |
| SsiI | CCGC | 2 cut(s) | 79, 265 |
| SspMI | CTAG | 3 cut(s) | 96, 126, 242 |
| SstI | GAGCTC | 2 cut(s) | 468, 587 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 219, 550 |
| TaqI | TCGA | 4 cut(s) | 120, 198, 424, 527 |
| TasI | AATT | 4 cut(s) | 17, 332, 523, 562 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 557 |
| Tru1I | TTAA | 2 cut(s) | 318, 326 |
| Tru9I | TTAA | 2 cut(s) | 318, 326 |
| TseFI | GTSAC | 1 cut(s) | 221 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 221 |
| TspDTI | ATGAA | 2 cut(s) | 449, 494 |
| TspGWI | ACGGA | 3 cut(s) | 209, 460, 523 |
| Tth111I | GACNNNGTC | 1 cut(s) | 215 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 2 cut(s) | 309, 549 |
| XspI | CTAG | 3 cut(s) | 96, 126, 242 |