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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| AccII | CGCG | 2 cut(s) | 59, 489 |
| AccIII | TCCGGA | 1 cut(s) | 469 |
| AciI | CCGC | 1 cut(s) | 583 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AcuI | CTGAAG | 1 cut(s) | 588 |
| AfaI | GTAC | 2 cut(s) | 74, 204 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 82, 571 |
| AflIII | ACRYGT | 1 cut(s) | 619 |
| AgsI | TTSAA | 1 cut(s) | 196 |
| AluBI | AGCT | 3 cut(s) | 382, 404, 644 |
| AluI | AGCT | 3 cut(s) | 382, 404, 644 |
| Alw21I | GWGCWC | 1 cut(s) | 601 |
| Alw26I | GTCTC | 2 cut(s) | 316, 746 |
| Alw44I | GTGCAC | 1 cut(s) | 597 |
| Ama87I | CYCGRG | 1 cut(s) | 113 |
| Aor13HI | TCCGGA | 1 cut(s) | 469 |
| AoxI | GGCC | 1 cut(s) | 637 |
| ApaLI | GTGCAC | 1 cut(s) | 597 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 225 |
| AspLEI | GCGC | 3 cut(s) | 61, 491, 706 |
| AspS9I | GGNCC | 2 cut(s) | 88, 551 |
| AsuHPI | GGTGA | 1 cut(s) | 554 |
| AvaI | CYCGRG | 1 cut(s) | 113 |
| AvaII | GGWCC | 2 cut(s) | 88, 551 |
| BaeGI | GKGCMC | 1 cut(s) | 601 |
| BbsI | GAAGAC | 1 cut(s) | 296 |
| Bbv12I | GWGCWC | 1 cut(s) | 601 |
| BbvI | GCAGC | 1 cut(s) | 130 |
| BccI | CCATC | 4 cut(s) | 35, 162, 238, 690 |
| BcoDI | GTCTC | 2 cut(s) | 316, 746 |
| BfaI | CTAG | 2 cut(s) | 357, 444 |
| BfoI | RGCGCY | 1 cut(s) | 707 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| Bme18I | GGWCC | 2 cut(s) | 88, 551 |
| BmeT110I | CYCGRG | 1 cut(s) | 113 |
| BmgT120I | GGNCC | 2 cut(s) | 88, 551 |
| BmiI | GGNNCC | 4 cut(s) | 90, 457, 605, 720 |
| BmsI | GCATC | 3 cut(s) | 372, 494, 724 |
| BpiI | GAAGAC | 1 cut(s) | 296 |
| BsaBI | GATNNNNATC | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 3 cut(s) | 450, 495, 607 |
| BsaWI | WCCGGW | 2 cut(s) | 469, 647 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 82, 571 |
| Bse8I | GATNNNNATC | 1 cut(s) | 281 |
| BseAI | TCCGGA | 1 cut(s) | 469 |
| BseDI | CCNNGG | 3 cut(s) | 450, 495, 607 |
| BseGI | GGATG | 2 cut(s) | 509, 682 |
| BseJI | GATNNNNATC | 1 cut(s) | 281 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 82, 571 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseSI | GKGCMC | 1 cut(s) | 601 |
| BseXI | GCAGC | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 2 cut(s) | 59, 489 |
| BshFI | GGCC | 1 cut(s) | 639 |
| BsiHKAI | GWGCWC | 1 cut(s) | 601 |
| BsiHKCI | CYCGRG | 1 cut(s) | 113 |
| BsiSI | CCGG | 2 cut(s) | 470, 648 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 82, 571 |
| BsmAI | GTCTC | 2 cut(s) | 316, 746 |
| BsmBI | CGTCTC | 1 cut(s) | 316 |
| BsnI | GGCC | 1 cut(s) | 639 |
| BsoBI | CYCGRG | 1 cut(s) | 113 |
| Bsp1286I | GDGCHC | 1 cut(s) | 601 |
| Bsp13I | TCCGGA | 1 cut(s) | 469 |
| Bsp143I | GATC | 2 cut(s) | 282, 710 |
| BspACI | CCGC | 1 cut(s) | 583 |
| BspANI | GGCC | 1 cut(s) | 639 |
| BspCNI | CTCAG | 1 cut(s) | 756 |
| BspEI | TCCGGA | 1 cut(s) | 469 |
| BspFNI | CGCG | 2 cut(s) | 59, 489 |
| BspHI | TCATGA | 2 cut(s) | 36, 376 |
| BspLI | GGNNCC | 4 cut(s) | 90, 457, 605, 720 |
| BssECI | CCNNGG | 3 cut(s) | 450, 495, 607 |
| BssMI | GATC | 2 cut(s) | 282, 710 |
| BssT1I | CCWWGG | 1 cut(s) | 495 |
| Bst4CI | ACNGT | 1 cut(s) | 608 |
| Bst6I | CTCTTC | 1 cut(s) | 564 |
| BstC8I | GCNNGC | 1 cut(s) | 597 |
| BstDEI | CTNAG | 3 cut(s) | 157, 522, 743 |
| BstDSI | CCRYGG | 2 cut(s) | 450, 607 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 80 |
| BstF5I | GGATG | 2 cut(s) | 509, 682 |
| BstFNI | CGCG | 2 cut(s) | 59, 489 |
| BstH2I | RGCGCY | 1 cut(s) | 707 |
| BstHHI | GCGC | 3 cut(s) | 61, 491, 706 |
| BstKTI | GATC | 2 cut(s) | 285, 713 |
| BstMAI | GTCTC | 2 cut(s) | 316, 746 |
| BstMBI | GATC | 2 cut(s) | 282, 710 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 701 |
| BstSLI | GKGCMC | 1 cut(s) | 601 |
| BstUI | CGCG | 2 cut(s) | 59, 489 |
| BstV1I | GCAGC | 1 cut(s) | 130 |
| BstV2I | GAAGAC | 1 cut(s) | 296 |
| BsuRI | GGCC | 1 cut(s) | 639 |
| BtgI | CCRYGG | 2 cut(s) | 450, 607 |
| BtsCI | GGATG | 2 cut(s) | 509, 682 |
| BtsIMutI | CAGTG | 1 cut(s) | 267 |
| Cac8I | GCNNGC | 1 cut(s) | 597 |
| CciI | TCATGA | 2 cut(s) | 36, 376 |
| CfoI | GCGC | 3 cut(s) | 61, 491, 706 |
| Cfr13I | GGNCC | 2 cut(s) | 88, 551 |
| CseI | GACGC | 2 cut(s) | 65, 369 |
| Csp6I | GTAC | 2 cut(s) | 73, 203 |
| CviAII | CATG | 4 cut(s) | 37, 49, 377, 394 |
| CviJI | RGCY | 8 cut(s) | 11, 26, 177, 329, 382, 404, 639, 644 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 26, 177, 329, 382, 404, 639, 644 |
| CviQI | GTAC | 2 cut(s) | 73, 203 |
| DdeI | CTNAG | 3 cut(s) | 157, 522, 743 |
| DpnI | GATC | 2 cut(s) | 284, 712 |
| DpnII | GATC | 2 cut(s) | 282, 710 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 1 cut(s) | 564 |
| EarI | CTCTTC | 1 cut(s) | 564 |
| Eco130I | CCWWGG | 1 cut(s) | 495 |
| Eco47I | GGWCC | 2 cut(s) | 88, 551 |
| Eco57I | CTGAAG | 1 cut(s) | 588 |
| Eco88I | CYCGRG | 1 cut(s) | 113 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 80 |
| EcoO109I | RGGNCCY | 1 cut(s) | 88 |
| EcoRI | GAATTC | 1 cut(s) | 248 |
| EcoT14I | CCWWGG | 1 cut(s) | 495 |
| ErhI | CCWWGG | 1 cut(s) | 495 |
| Esp3I | CGTCTC | 1 cut(s) | 316 |
| FaeI | CATG | 4 cut(s) | 40, 52, 380, 397 |
| FatI | CATG | 4 cut(s) | 36, 48, 376, 393 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| FokI | GGATG | 2 cut(s) | 516, 669 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 2 cut(s) | 357, 444 |
| GlaI | GCGC | 3 cut(s) | 60, 490, 705 |
| GluI | GCNGC | 1 cut(s) | 119 |
| HaeII | RGCGCY | 1 cut(s) | 707 |
| HaeIII | GGCC | 1 cut(s) | 639 |
| HapII | CCGG | 2 cut(s) | 470, 648 |
| HgaI | GACGC | 2 cut(s) | 65, 369 |
| HhaI | GCGC | 3 cut(s) | 61, 491, 706 |
| Hin1II | CATG | 4 cut(s) | 40, 52, 380, 397 |
| Hin6I | GCGC | 3 cut(s) | 59, 489, 704 |
| HinP1I | GCGC | 3 cut(s) | 59, 489, 704 |
| HindIII | AAGCTT | 1 cut(s) | 642 |
| HinfI | GANTC | 2 cut(s) | 140, 292 |
| HpaII | CCGG | 2 cut(s) | 470, 648 |
| HphI | GGTGA | 1 cut(s) | 554 |
| Hpy166II | GTNNAC | 2 cut(s) | 599, 617 |
| Hpy188I | TCNGA | 4 cut(s) | 190, 220, 342, 746 |
| Hpy188III | TCNNGA | 7 cut(s) | 37, 152, 286, 377, 444, 470, 540 |
| Hpy8I | GTNNAC | 2 cut(s) | 599, 617 |
| HpyAV | CCTTC | 2 cut(s) | 313, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 608 |
| HpyCH4IV | ACGT | 3 cut(s) | 132, 399, 619 |
| HpyCH4V | TGCA | 3 cut(s) | 317, 507, 599 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 701 |
| HpyF3I | CTNAG | 3 cut(s) | 157, 522, 743 |
| HpySE526I | ACGT | 3 cut(s) | 132, 399, 619 |
| Hsp92II | CATG | 4 cut(s) | 40, 52, 380, 397 |
| HspAI | GCGC | 3 cut(s) | 59, 489, 704 |
| Kpn2I | TCCGGA | 1 cut(s) | 469 |
| Kzo9I | GATC | 2 cut(s) | 282, 710 |
| LmnI | GCTCC | 3 cut(s) | 66, 511, 700 |
| LpnPI | CCDG | 9 cut(s) | 158, 165, 483, 525, 534, 579, 661, 712, 735 |
| Lsp1109I | GCAGC | 1 cut(s) | 130 |
| LweI | GCATC | 3 cut(s) | 372, 494, 724 |
| MaeI | CTAG | 2 cut(s) | 357, 444 |
| MaeII | ACGT | 3 cut(s) | 132, 399, 619 |
| MaeIII | GTNAC | 1 cut(s) | 659 |
| MalI | GATC | 2 cut(s) | 284, 712 |
| MboI | GATC | 2 cut(s) | 282, 710 |
| MboII | GAAGA | 3 cut(s) | 301, 442, 581 |
| MhlI | GDGCHC | 1 cut(s) | 601 |
| MluCI | AATT | 5 cut(s) | 214, 248, 384, 465, 478 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MroI | TCCGGA | 1 cut(s) | 469 |
| MroXI | GAANNNNTTC | 1 cut(s) | 225 |
| MseI | TTAA | 4 cut(s) | 234, 351, 464, 477 |
| MslI | CAYNNNNRTG | 4 cut(s) | 35, 51, 425, 732 |
| MspI | CCGG | 2 cut(s) | 470, 648 |
| MvnI | CGCG | 2 cut(s) | 59, 489 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 701 |
| NdeII | GATC | 2 cut(s) | 282, 710 |
| NlaIII | CATG | 4 cut(s) | 40, 52, 380, 397 |
| NlaIV | GGNNCC | 4 cut(s) | 90, 457, 605, 720 |
| PaeR7I | CTCGAG | 1 cut(s) | 113 |
| PagI | TCATGA | 2 cut(s) | 36, 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 225 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| PleI | GAGTC | 1 cut(s) | 286 |
| PpsI | GAGTC | 1 cut(s) | 286 |
| PpuMI | RGGWCCY | 1 cut(s) | 88 |
| Psp5II | RGGWCCY | 1 cut(s) | 88 |
| PspN4I | GGNNCC | 4 cut(s) | 90, 457, 605, 720 |
| PspPI | GGNCC | 2 cut(s) | 88, 551 |
| PspPPI | RGGWCCY | 1 cut(s) | 88 |
| PspXI | VCTCGAGB | 1 cut(s) | 113 |
| RsaI | GTAC | 2 cut(s) | 74, 204 |
| RsaNI | GTAC | 2 cut(s) | 73, 203 |
| RseI | CAYNNNNRTG | 4 cut(s) | 35, 51, 425, 732 |
| SaqAI | TTAA | 4 cut(s) | 234, 351, 464, 477 |
| SatI | GCNGC | 1 cut(s) | 119 |
| Sau3AI | GATC | 2 cut(s) | 282, 710 |
| Sau96I | GGNCC | 2 cut(s) | 88, 551 |
| SchI | GAGTC | 1 cut(s) | 286 |
| SduI | GDGCHC | 1 cut(s) | 601 |
| SfaNI | GCATC | 3 cut(s) | 372, 494, 724 |
| Sfr274I | CTCGAG | 1 cut(s) | 113 |
| SinI | GGWCC | 2 cut(s) | 88, 551 |
| SlaI | CTCGAG | 1 cut(s) | 113 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 35, 51, 425, 732 |
| SmlI | CTYRAG | 1 cut(s) | 113 |
| SmoI | CTYRAG | 1 cut(s) | 113 |
| Sse9I | AATT | 5 cut(s) | 214, 248, 384, 465, 478 |
| SsiI | CCGC | 1 cut(s) | 583 |
| SspMI | CTAG | 2 cut(s) | 357, 444 |
| StyI | CCWWGG | 1 cut(s) | 495 |
| TaaI | ACNGT | 1 cut(s) | 608 |
| TaiI | ACGT | 3 cut(s) | 135, 402, 622 |
| TaqI | TCGA | 3 cut(s) | 114, 285, 709 |
| TasI | AATT | 5 cut(s) | 214, 248, 384, 465, 478 |
| TatI | WGTACW | 1 cut(s) | 202 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| Tru1I | TTAA | 4 cut(s) | 234, 351, 464, 477 |
| Tru9I | TTAA | 4 cut(s) | 234, 351, 464, 477 |
| TscAI | CASTG | 1 cut(s) | 274 |
| TseI | GCWGC | 1 cut(s) | 118 |
| TspDTI | ATGAA | 4 cut(s) | 30, 65, 365, 410 |
| TspGWI | ACGGA | 2 cut(s) | 125, 616 |
| TspRI | CASTG | 1 cut(s) | 274 |
| VneI | GTGCAC | 1 cut(s) | 597 |
| VpaK11BI | GGWCC | 2 cut(s) | 88, 551 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 80 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XbaI | TCTAGA | 1 cut(s) | 443 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 99 |
| XhoI | CTCGAG | 1 cut(s) | 113 |
| XmnI | GAANNNNTTC | 1 cut(s) | 225 |
| XspI | CTAG | 2 cut(s) | 357, 444 |