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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 759 |
| AccB1I | GGYRCC | 1 cut(s) | 935 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 165, 429 |
| AccI | GTMKAC | 1 cut(s) | 33 |
| AccII | CGCG | 2 cut(s) | 278, 1035 |
| AciI | CCGC | 4 cut(s) | 257, 278, 287, 727 |
| AcoI | YGGCCR | 2 cut(s) | 199, 381 |
| AcuI | CTGAAG | 1 cut(s) | 786 |
| AfaI | GTAC | 3 cut(s) | 27, 118, 593 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 49, 100, 120, 165, 393, 429, 628, 1046 |
| AgsI | TTSAA | 3 cut(s) | 406, 742, 876 |
| Alw21I | GWGCWC | 3 cut(s) | 444, 531, 930 |
| Alw26I | GTCTC | 2 cut(s) | 178, 406 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 344 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| AoxI | GGCC | 6 cut(s) | 11, 91, 110, 199, 206, 381 |
| ApaI | GGGCCC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 5 cut(s) | 259, 289, 327, 338, 664 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 15, 47, 502, 534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 771 |
| AspLEI | GCGC | 2 cut(s) | 607, 1037 |
| AspS9I | GGNCC | 3 cut(s) | 92, 110, 111 |
| AsuII | TTCGAA | 1 cut(s) | 775 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| BaeGI | GKGCMC | 2 cut(s) | 114, 274 |
| BalI | TGGCCA | 1 cut(s) | 383 |
| BanI | GGYRCC | 1 cut(s) | 935 |
| BanII | GRGCYC | 2 cut(s) | 114, 930 |
| BauI | CACGAG | 2 cut(s) | 105, 267 |
| BbsI | GAAGAC | 1 cut(s) | 639 |
| Bbv12I | GWGCWC | 3 cut(s) | 444, 531, 930 |
| BbvI | GCAGC | 5 cut(s) | 271, 301, 339, 350, 676 |
| BccI | CCATC | 4 cut(s) | 482, 512, 708, 784 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 248, 278, 282, 312, 316, 350 |
| BcoDI | GTCTC | 2 cut(s) | 178, 406 |
| BfaI | CTAG | 2 cut(s) | 516, 990 |
| BfmI | CTRYAG | 2 cut(s) | 325, 1027 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 278 |
| BisI | GCNGC | 6 cut(s) | 260, 279, 290, 328, 339, 665 |
| BlsI | GCNGC | 6 cut(s) | 261, 280, 291, 329, 340, 666 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BmgT120I | GGNCC | 3 cut(s) | 92, 110, 111 |
| BmiI | GGNNCC | 4 cut(s) | 94, 112, 113, 937 |
| BmsI | GCATC | 5 cut(s) | 66, 290, 301, 339, 592 |
| BpiI | GAAGAC | 1 cut(s) | 639 |
| BpmI | CTGGAG | 1 cut(s) | 202 |
| Bpu14I | TTCGAA | 1 cut(s) | 775 |
| BpuEI | CTTGAG | 1 cut(s) | 680 |
| BsaBI | GATNNNNATC | 1 cut(s) | 827 |
| BsaI | GGTCTC | 1 cut(s) | 406 |
| BsaJI | CCNNGG | 3 cut(s) | 99, 996, 1041 |
| BsaWI | WCCGGW | 1 cut(s) | 72 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 49, 100, 120, 165, 393, 429, 628, 1046 |
| Bse1I | ACTGG | 1 cut(s) | 29 |
| Bse8I | GATNNNNATC | 1 cut(s) | 827 |
| BseDI | CCNNGG | 3 cut(s) | 99, 996, 1041 |
| BseGI | GGATG | 5 cut(s) | 81, 292, 319, 330, 504 |
| BseJI | GATNNNNATC | 1 cut(s) | 827 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 49, 100, 120, 165, 393, 429, 628, 1046 |
| BseMII | CTCAG | 2 cut(s) | 336, 942 |
| BseNI | ACTGG | 1 cut(s) | 29 |
| BseSI | GKGCMC | 2 cut(s) | 114, 274 |
| BseXI | GCAGC | 5 cut(s) | 271, 301, 339, 350, 676 |
| BseYI | CCCAGC | 1 cut(s) | 366 |
| Bsh1236I | CGCG | 2 cut(s) | 278, 1035 |
| BshFI | GGCC | 6 cut(s) | 13, 93, 112, 201, 208, 383 |
| BshNI | GGYRCC | 1 cut(s) | 935 |
| BsiHKAI | GWGCWC | 3 cut(s) | 444, 531, 930 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiSI | CCGG | 3 cut(s) | 73, 202, 394 |
| BsiWI | CGTACG | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 49, 100, 120, 165, 393, 429, 628, 1046 |
| BsmAI | GTCTC | 2 cut(s) | 178, 406 |
| BsmI | GAATGC | 1 cut(s) | 904 |
| BsnI | GGCC | 6 cut(s) | 13, 93, 112, 201, 208, 383 |
| Bso31I | GGTCTC | 1 cut(s) | 406 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| Bsp119I | TTCGAA | 1 cut(s) | 775 |
| Bsp120I | GGGCCC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 5 cut(s) | 114, 274, 444, 531, 930 |
| Bsp143I | GATC | 1 cut(s) | 828 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| BspACI | CCGC | 4 cut(s) | 257, 278, 287, 727 |
| BspANI | GGCC | 6 cut(s) | 13, 93, 112, 201, 208, 383 |
| BspCNI | CTCAG | 2 cut(s) | 337, 943 |
| BspFNI | CGCG | 2 cut(s) | 278, 1035 |
| BspHI | TCATGA | 2 cut(s) | 582, 922 |
| BspLI | GGNNCC | 4 cut(s) | 94, 112, 113, 937 |
| BspMAI | CTGCAG | 1 cut(s) | 329 |
| BspQI | GCTCTTC | 1 cut(s) | 777 |
| BspT104I | TTCGAA | 1 cut(s) | 775 |
| BspT107I | GGYRCC | 1 cut(s) | 935 |
| BspTNI | GGTCTC | 1 cut(s) | 406 |
| BsrI | ACTGG | 1 cut(s) | 29 |
| BssECI | CCNNGG | 3 cut(s) | 99, 996, 1041 |
| BssMI | GATC | 1 cut(s) | 828 |
| BssSI | CACGAG | 2 cut(s) | 105, 267 |
| BssT1I | CCWWGG | 2 cut(s) | 99, 1041 |
| Bst2BI | CACGAG | 2 cut(s) | 105, 267 |
| Bst4CI | ACNGT | 1 cut(s) | 429 |
| Bst6I | CTCTTC | 1 cut(s) | 777 |
| BstBI | TTCGAA | 1 cut(s) | 775 |
| BstC8I | GCNNGC | 1 cut(s) | 543 |
| BstDEI | CTNAG | 3 cut(s) | 345, 479, 951 |
| BstDSI | CCRYGG | 2 cut(s) | 99, 996 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 626 |
| BstF5I | GGATG | 5 cut(s) | 81, 292, 319, 330, 504 |
| BstFNI | CGCG | 2 cut(s) | 278, 1035 |
| BstHHI | GCGC | 2 cut(s) | 607, 1037 |
| BstKTI | GATC | 1 cut(s) | 831 |
| BstMAI | GTCTC | 2 cut(s) | 178, 406 |
| BstMBI | GATC | 1 cut(s) | 828 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 278 |
| BstNSI | RCATGY | 1 cut(s) | 83 |
| BstSFI | CTRYAG | 2 cut(s) | 325, 1027 |
| BstSLI | GKGCMC | 2 cut(s) | 114, 274 |
| BstUI | CGCG | 2 cut(s) | 278, 1035 |
| BstV1I | GCAGC | 5 cut(s) | 271, 301, 339, 350, 676 |
| BstV2I | GAAGAC | 1 cut(s) | 639 |
| BsuRI | GGCC | 6 cut(s) | 13, 93, 112, 201, 208, 383 |
| BtgI | CCRYGG | 2 cut(s) | 99, 996 |
| BtsCI | GGATG | 5 cut(s) | 81, 292, 319, 330, 504 |
| Cac8I | GCNNGC | 1 cut(s) | 543 |
| CaiI | CAGNNNCTG | 1 cut(s) | 344 |
| CciI | TCATGA | 2 cut(s) | 582, 922 |
| CfoI | GCGC | 2 cut(s) | 607, 1037 |
| Cfr13I | GGNCC | 3 cut(s) | 92, 110, 111 |
| CseI | GACGC | 1 cut(s) | 251 |
| Csp6I | GTAC | 3 cut(s) | 26, 117, 592 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 360, 395 |
| CviAII | CATG | 7 cut(s) | 80, 85, 100, 583, 595, 923, 940 |
| CviQI | GTAC | 3 cut(s) | 26, 117, 592 |
| DdeI | CTNAG | 3 cut(s) | 345, 479, 951 |
| DpnI | GATC | 1 cut(s) | 830 |
| DpnII | GATC | 1 cut(s) | 828 |
| EaeI | YGGCCR | 2 cut(s) | 199, 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 777 |
| EarI | CTCTTC | 1 cut(s) | 777 |
| Ecl136II | GAGCTC | 1 cut(s) | 928 |
| Eco130I | CCWWGG | 2 cut(s) | 99, 1041 |
| Eco24I | GRGCYC | 2 cut(s) | 114, 930 |
| Eco31I | GGTCTC | 1 cut(s) | 406 |
| Eco53kI | GAGCTC | 1 cut(s) | 928 |
| Eco57I | CTGAAG | 1 cut(s) | 786 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| EcoICRI | GAGCTC | 1 cut(s) | 928 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 626 |
| EcoO109I | RGGNCCY | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 2 cut(s) | 99, 1041 |
| EcoT22I | ATGCAT | 1 cut(s) | 81 |
| EcoT38I | GRGCYC | 2 cut(s) | 114, 930 |
| ErhI | CCWWGG | 2 cut(s) | 99, 1041 |
| FaeI | CATG | 7 cut(s) | 83, 88, 103, 586, 598, 926, 943 |
| FatI | CATG | 7 cut(s) | 79, 84, 99, 582, 594, 922, 939 |
| FauI | CCCGC | 1 cut(s) | 264 |
| FblI | GTMKAC | 1 cut(s) | 33 |
| Fnu4HI | GCNGC | 6 cut(s) | 260, 279, 290, 328, 339, 665 |
| FokI | GGATG | 5 cut(s) | 88, 279, 306, 317, 491 |
| FriOI | GRGCYC | 2 cut(s) | 114, 930 |
| Fsp4HI | GCNGC | 6 cut(s) | 260, 279, 290, 328, 339, 665 |
| FspBI | CTAG | 2 cut(s) | 516, 990 |
| GlaI | GCGC | 2 cut(s) | 606, 1036 |
| GluI | GCNGC | 6 cut(s) | 260, 279, 290, 328, 339, 665 |
| GsaI | CCCAGC | 1 cut(s) | 370 |
| GsuI | CTGGAG | 1 cut(s) | 202 |
| HaeIII | GGCC | 6 cut(s) | 13, 93, 112, 201, 208, 383 |
| HapII | CCGG | 3 cut(s) | 73, 202, 394 |
| HgaI | GACGC | 1 cut(s) | 251 |
| HhaI | GCGC | 2 cut(s) | 607, 1037 |
| Hin1II | CATG | 7 cut(s) | 83, 88, 103, 586, 598, 926, 943 |
| Hin6I | GCGC | 2 cut(s) | 605, 1035 |
| HinP1I | GCGC | 2 cut(s) | 605, 1035 |
| HincII | GTYRAC | 1 cut(s) | 34 |
| HindII | GTYRAC | 1 cut(s) | 34 |
| HindIII | AAGCTT | 1 cut(s) | 451 |
| HinfI | GANTC | 6 cut(s) | 311, 467, 686, 777, 838, 1019 |
| HpaII | CCGG | 3 cut(s) | 73, 202, 394 |
| Hpy166II | GTNNAC | 1 cut(s) | 34 |
| Hpy188I | TCNGA | 7 cut(s) | 67, 172, 194, 227, 522, 766, 888 |
| Hpy188III | TCNNGA | 7 cut(s) | 497, 583, 683, 698, 832, 923, 1016 |
| Hpy8I | GTNNAC | 1 cut(s) | 34 |
| Hpy99I | CGWCG | 1 cut(s) | 241 |
| HpyAV | CCTTC | 3 cut(s) | 261, 859, 865 |
| HpyCH4III | ACNGT | 1 cut(s) | 429 |
| HpyCH4IV | ACGT | 3 cut(s) | 525, 907, 945 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 244, 327, 360, 902 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 278 |
| HpyF3I | CTNAG | 3 cut(s) | 345, 479, 951 |
| HpySE526I | ACGT | 3 cut(s) | 525, 907, 945 |
| Hsp92II | CATG | 7 cut(s) | 83, 88, 103, 586, 598, 926, 943 |
| HspAI | GCGC | 2 cut(s) | 605, 1035 |
| Kzo9I | GATC | 1 cut(s) | 828 |
| LguI | GCTCTTC | 1 cut(s) | 777 |
| LmnI | GCTCC | 2 cut(s) | 457, 612 |
| Lsp1109I | GCAGC | 5 cut(s) | 271, 301, 339, 350, 676 |
| LweI | GCATC | 5 cut(s) | 66, 290, 301, 339, 592 |
| MaeI | CTAG | 2 cut(s) | 516, 990 |
| MaeII | ACGT | 3 cut(s) | 525, 907, 945 |
| MaeIII | GTNAC | 1 cut(s) | 683 |
| MalI | GATC | 1 cut(s) | 830 |
| MboI | GATC | 1 cut(s) | 828 |
| MboII | GAAGA | 3 cut(s) | 644, 764, 847 |
| MhlI | GDGCHC | 5 cut(s) | 114, 274, 444, 531, 930 |
| MlsI | TGGCCA | 1 cut(s) | 383 |
| MluCI | AATT | 2 cut(s) | 576, 880 |
| MluNI | TGGCCA | 1 cut(s) | 383 |
| MlyI | GAGTC | 4 cut(s) | 305, 476, 680, 1028 |
| MmeI | TCCRAC | 3 cut(s) | 45, 150, 500 |
| Mox20I | TGGCCA | 1 cut(s) | 383 |
| Mph1103I | ATGCAT | 1 cut(s) | 81 |
| MroXI | GAANNNNTTC | 1 cut(s) | 771 |
| MscI | TGGCCA | 1 cut(s) | 383 |
| Msp20I | TGGCCA | 1 cut(s) | 383 |
| MspI | CCGG | 3 cut(s) | 73, 202, 394 |
| Mva1269I | GAATGC | 1 cut(s) | 904 |
| MvnI | CGCG | 2 cut(s) | 278, 1035 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 278 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NdeII | GATC | 1 cut(s) | 828 |
| NlaIII | CATG | 7 cut(s) | 83, 88, 103, 586, 598, 926, 943 |
| NlaIV | GGNNCC | 4 cut(s) | 94, 112, 113, 937 |
| NmuCI | GTSAC | 1 cut(s) | 683 |
| NsiI | ATGCAT | 1 cut(s) | 81 |
| NspI | RCATGY | 1 cut(s) | 83 |
| NspV | TTCGAA | 1 cut(s) | 775 |
| PagI | TCATGA | 2 cut(s) | 582, 922 |
| PciSI | GCTCTTC | 1 cut(s) | 777 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 112 |
| PctI | GAATGC | 1 cut(s) | 904 |
| PdmI | GAANNNNTTC | 1 cut(s) | 771 |
| PfeI | GAWTC | 2 cut(s) | 777, 838 |
| Pfl23II | CGTACG | 1 cut(s) | 116 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 165, 429 |
| PkrI | GCNGC | 6 cut(s) | 261, 280, 291, 329, 340, 666 |
| PleI | GAGTC | 4 cut(s) | 305, 475, 680, 1027 |
| PpsI | GAGTC | 4 cut(s) | 305, 475, 680, 1027 |
| PsiI | TTATAA | 1 cut(s) | 759 |
| Psp124BI | GAGCTC | 1 cut(s) | 930 |
| PspFI | CCCAGC | 1 cut(s) | 366 |
| PspLI | CGTACG | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 4 cut(s) | 94, 112, 113, 937 |
| PspOMI | GGGCCC | 1 cut(s) | 110 |
| PspPI | GGNCC | 3 cut(s) | 92, 110, 111 |
| PstI | CTGCAG | 1 cut(s) | 329 |
| PstNI | CAGNNNCTG | 1 cut(s) | 344 |
| RsaI | GTAC | 3 cut(s) | 27, 118, 593 |
| RsaNI | GTAC | 3 cut(s) | 26, 117, 592 |
| SacI | GAGCTC | 1 cut(s) | 930 |
| SalI | GTCGAC | 1 cut(s) | 32 |
| SapI | GCTCTTC | 1 cut(s) | 777 |
| SatI | GCNGC | 6 cut(s) | 260, 279, 290, 328, 339, 665 |
| Sau3AI | GATC | 1 cut(s) | 828 |
| Sau96I | GGNCC | 3 cut(s) | 92, 110, 111 |
| SchI | GAGTC | 4 cut(s) | 305, 476, 680, 1028 |
| SduI | GDGCHC | 5 cut(s) | 114, 274, 444, 531, 930 |
| SfaNI | GCATC | 5 cut(s) | 66, 290, 301, 339, 592 |
| SfcI | CTRYAG | 2 cut(s) | 325, 1027 |
| SfuI | TTCGAA | 1 cut(s) | 775 |
| SmlI | CTYRAG | 1 cut(s) | 659 |
| SmoI | CTYRAG | 1 cut(s) | 659 |
| Sse9I | AATT | 2 cut(s) | 576, 880 |
| SsiI | CCGC | 4 cut(s) | 257, 278, 287, 727 |
| SspMI | CTAG | 2 cut(s) | 516, 990 |
| SstI | GAGCTC | 1 cut(s) | 930 |
| StyI | CCWWGG | 2 cut(s) | 99, 1041 |
| TaaI | ACNGT | 1 cut(s) | 429 |
| TaiI | ACGT | 3 cut(s) | 528, 910, 948 |
| TaqI | TCGA | 3 cut(s) | 33, 775, 831 |
| TasI | AATT | 2 cut(s) | 576, 880 |
| TauI | GCSGC | 1 cut(s) | 281 |
| TfiI | GAWTC | 2 cut(s) | 777, 838 |
| TseFI | GTSAC | 1 cut(s) | 683 |
| TseI | GCWGC | 5 cut(s) | 259, 289, 327, 338, 664 |
| Tsp45I | GTSAC | 1 cut(s) | 683 |
| TspDTI | ATGAA | 4 cut(s) | 211, 611, 911, 956 |
| TspGWI | ACGGA | 1 cut(s) | 323 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 165, 429 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 626 |
| XceI | RCATGY | 1 cut(s) | 83 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 645 |
| XmiI | GTMKAC | 1 cut(s) | 33 |
| XmnI | GAANNNNTTC | 1 cut(s) | 771 |
| XspI | CTAG | 2 cut(s) | 516, 990 |
| Zsp2I | ATGCAT | 1 cut(s) | 81 |