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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 303 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 639 |
| AccB1I | GGYRCC | 2 cut(s) | 479, 908 |
| AccII | CGCG | 1 cut(s) | 579 |
| AccIII | TCCGGA | 1 cut(s) | 559 |
| AciI | CCGC | 2 cut(s) | 271, 729 |
| AcoI | YGGCCR | 1 cut(s) | 346 |
| AcyI | GRCGYC | 2 cut(s) | 480, 891 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 590, 661, 853 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 709 |
| AgsI | TTSAA | 4 cut(s) | 22, 167, 286, 420 |
| AluBI | AGCT | 6 cut(s) | 155, 179, 245, 314, 472, 494 |
| AluI | AGCT | 6 cut(s) | 155, 179, 245, 314, 472, 494 |
| Alw21I | GWGCWC | 2 cut(s) | 474, 691 |
| Alw26I | GTCTC | 3 cut(s) | 32, 197, 406 |
| Alw44I | GTGCAC | 1 cut(s) | 687 |
| Aor13HI | TCCGGA | 1 cut(s) | 559 |
| AoxI | GGCC | 1 cut(s) | 346 |
| ApaLI | GTGCAC | 1 cut(s) | 687 |
| AseI | ATTAAT | 1 cut(s) | 435 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 137, 315 |
| AspA2I | CCTAGG | 1 cut(s) | 913 |
| AspLEI | GCGC | 5 cut(s) | 50, 81, 482, 581, 863 |
| AspS9I | GGNCC | 1 cut(s) | 641 |
| AsuHPI | GGTGA | 2 cut(s) | 922, 929 |
| AsuNHI | GCTAGC | 1 cut(s) | 857 |
| AvaII | GGWCC | 1 cut(s) | 641 |
| AvrII | CCTAGG | 1 cut(s) | 913 |
| AxyI | CCTNAGG | 1 cut(s) | 852 |
| BaeGI | GKGCMC | 1 cut(s) | 691 |
| BalI | TGGCCA | 1 cut(s) | 348 |
| BanI | GGYRCC | 2 cut(s) | 479, 908 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 2 cut(s) | 474, 691 |
| BccI | CCATC | 9 cut(s) | 57, 92, 122, 252, 328, 818, 881, 899, 903 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 197, 406 |
| BfaI | CTAG | 5 cut(s) | 35, 126, 534, 858, 914 |
| BfmI | CTRYAG | 1 cut(s) | 571 |
| BfoI | RGCGCY | 1 cut(s) | 483 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BlnI | CCTAGG | 1 cut(s) | 913 |
| Bme18I | GGWCC | 1 cut(s) | 641 |
| BmgT120I | GGNCC | 1 cut(s) | 641 |
| BmiI | GGNNCC | 6 cut(s) | 481, 695, 733, 795, 810, 910 |
| BmsI | GCATC | 1 cut(s) | 868 |
| BmtI | GCTAGC | 1 cut(s) | 861 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BsaBI | GATNNNNATC | 1 cut(s) | 371 |
| BsaHI | GRCGYC | 2 cut(s) | 480, 891 |
| BsaJI | CCNNGG | 5 cut(s) | 540, 697, 742, 882, 913 |
| BsaWI | WCCGGW | 1 cut(s) | 559 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 590, 661, 853 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 1 cut(s) | 852 |
| Bse8I | GATNNNNATC | 1 cut(s) | 371 |
| BseAI | TCCGGA | 1 cut(s) | 559 |
| BseDI | CCNNGG | 5 cut(s) | 540, 697, 742, 882, 913 |
| BseGI | GGATG | 2 cut(s) | 114, 892 |
| BseJI | GATNNNNATC | 1 cut(s) | 371 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 590, 661, 853 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseRI | GAGGAG | 1 cut(s) | 786 |
| BseSI | GKGCMC | 1 cut(s) | 691 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 579 |
| BshFI | GGCC | 1 cut(s) | 348 |
| BshNI | GGYRCC | 2 cut(s) | 479, 908 |
| BsiHKAI | GWGCWC | 2 cut(s) | 474, 691 |
| BsiSI | CCGG | 1 cut(s) | 560 |
| BslFI | GGGAC | 1 cut(s) | 635 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 590, 661, 853 |
| BsmAI | GTCTC | 3 cut(s) | 32, 197, 406 |
| BsmBI | CGTCTC | 1 cut(s) | 406 |
| BsmFI | GGGAC | 1 cut(s) | 635 |
| BsmI | GAATGC | 1 cut(s) | 863 |
| BsnI | GGCC | 1 cut(s) | 348 |
| Bsp1286I | GDGCHC | 2 cut(s) | 474, 691 |
| Bsp13I | TCCGGA | 1 cut(s) | 559 |
| Bsp143I | GATC | 2 cut(s) | 372, 800 |
| Bsp19I | CCATGG | 2 cut(s) | 742, 882 |
| BspACI | CCGC | 2 cut(s) | 271, 729 |
| BspANI | GGCC | 1 cut(s) | 348 |
| BspEI | TCCGGA | 1 cut(s) | 559 |
| BspFNI | CGCG | 1 cut(s) | 579 |
| BspHI | TCATGA | 2 cut(s) | 195, 466 |
| BspLI | GGNNCC | 6 cut(s) | 481, 695, 733, 795, 810, 910 |
| BspOI | GCTAGC | 1 cut(s) | 861 |
| BspQI | GCTCTTC | 1 cut(s) | 321 |
| BspT107I | GGYRCC | 2 cut(s) | 479, 908 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 5 cut(s) | 540, 697, 742, 882, 913 |
| BssMI | GATC | 2 cut(s) | 372, 800 |
| BssNI | GRCGYC | 2 cut(s) | 480, 891 |
| BssT1I | CCWWGG | 3 cut(s) | 742, 882, 913 |
| Bst4CI | ACNGT | 1 cut(s) | 698 |
| Bst6I | CTCTTC | 2 cut(s) | 321, 710 |
| BstACI | GRCGYC | 2 cut(s) | 480, 891 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 153, 687, 859 |
| BstDEI | CTNAG | 3 cut(s) | 549, 612, 852 |
| BstDSI | CCRYGG | 4 cut(s) | 540, 697, 742, 882 |
| BstF5I | GGATG | 2 cut(s) | 114, 892 |
| BstFNI | CGCG | 1 cut(s) | 579 |
| BstH2I | RGCGCY | 1 cut(s) | 483 |
| BstHHI | GCGC | 5 cut(s) | 50, 81, 482, 581, 863 |
| BstKTI | GATC | 2 cut(s) | 375, 803 |
| BstMAI | GTCTC | 3 cut(s) | 32, 197, 406 |
| BstMBI | GATC | 2 cut(s) | 372, 800 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstSFI | CTRYAG | 1 cut(s) | 571 |
| BstSLI | GKGCMC | 1 cut(s) | 691 |
| BstUI | CGCG | 1 cut(s) | 579 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 824 |
| Bsu36I | CCTNAGG | 1 cut(s) | 852 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 348 |
| BtgI | CCRYGG | 4 cut(s) | 540, 697, 742, 882 |
| BtgZI | GCGATG | 1 cut(s) | 271 |
| BtsCI | GGATG | 2 cut(s) | 114, 892 |
| BtsI | GCAGTG | 1 cut(s) | 828 |
| BtsIMutI | CAGTG | 2 cut(s) | 407, 828 |
| Cac8I | GCNNGC | 3 cut(s) | 153, 687, 859 |
| CciI | TCATGA | 2 cut(s) | 195, 466 |
| CfoI | GCGC | 5 cut(s) | 50, 81, 482, 581, 863 |
| Cfr13I | GGNCC | 1 cut(s) | 641 |
| CseI | GACGC | 2 cut(s) | 603, 880 |
| CviAII | CATG | 7 cut(s) | 196, 208, 467, 484, 743, 875, 883 |
| DdeI | CTNAG | 3 cut(s) | 549, 612, 852 |
| DinI | GGCGCC | 1 cut(s) | 481 |
| DpnI | GATC | 2 cut(s) | 374, 802 |
| DpnII | GATC | 2 cut(s) | 372, 800 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 639 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 639 |
| EaeI | YGGCCR | 1 cut(s) | 346 |
| Eam1104I | CTCTTC | 2 cut(s) | 321, 710 |
| EarI | CTCTTC | 2 cut(s) | 321, 710 |
| EciI | GGCGGA | 1 cut(s) | 744 |
| Ecl136II | GAGCTC | 1 cut(s) | 472 |
| Eco130I | CCWWGG | 3 cut(s) | 742, 882, 913 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco47I | GGWCC | 1 cut(s) | 641 |
| Eco53kI | GAGCTC | 1 cut(s) | 472 |
| Eco81I | CCTNAGG | 1 cut(s) | 852 |
| EcoICRI | GAGCTC | 1 cut(s) | 472 |
| EcoT14I | CCWWGG | 3 cut(s) | 742, 882, 913 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| EgeI | GGCGCC | 1 cut(s) | 481 |
| EheI | GGCGCC | 1 cut(s) | 481 |
| ErhI | CCWWGG | 3 cut(s) | 742, 882, 913 |
| Esp3I | CGTCTC | 1 cut(s) | 406 |
| FaeI | CATG | 7 cut(s) | 199, 211, 470, 487, 746, 878, 886 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 635 |
| FatI | CATG | 7 cut(s) | 195, 207, 466, 483, 742, 874, 882 |
| FauNDI | CATATG | 1 cut(s) | 646 |
| FokI | GGATG | 2 cut(s) | 101, 899 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| FspBI | CTAG | 5 cut(s) | 35, 126, 534, 858, 914 |
| GlaI | GCGC | 5 cut(s) | 49, 80, 481, 580, 862 |
| HaeII | RGCGCY | 1 cut(s) | 483 |
| HaeIII | GGCC | 1 cut(s) | 348 |
| HapII | CCGG | 1 cut(s) | 560 |
| HgaI | GACGC | 2 cut(s) | 603, 880 |
| HhaI | GCGC | 5 cut(s) | 50, 81, 482, 581, 863 |
| Hin1I | GRCGYC | 2 cut(s) | 480, 891 |
| Hin1II | CATG | 7 cut(s) | 199, 211, 470, 487, 746, 878, 886 |
| Hin6I | GCGC | 5 cut(s) | 48, 79, 480, 579, 861 |
| HinP1I | GCGC | 5 cut(s) | 48, 79, 480, 579, 861 |
| HincII | GTYRAC | 1 cut(s) | 707 |
| HindII | GTYRAC | 1 cut(s) | 707 |
| HinfI | GANTC | 1 cut(s) | 563 |
| HpaII | CCGG | 1 cut(s) | 560 |
| HphI | GGTGA | 2 cut(s) | 922, 929 |
| Hpy166II | GTNNAC | 3 cut(s) | 689, 707, 841 |
| Hpy188I | TCNGA | 5 cut(s) | 71, 132, 310, 432, 739 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 196, 238, 376, 467, 560, 630 |
| Hpy8I | GTNNAC | 3 cut(s) | 689, 707, 841 |
| HpyCH4III | ACNGT | 1 cut(s) | 698 |
| HpyCH4IV | ACGT | 3 cut(s) | 451, 489, 709 |
| HpyCH4V | TGCA | 4 cut(s) | 407, 446, 689, 926 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 3 cut(s) | 549, 612, 852 |
| HpySE526I | ACGT | 3 cut(s) | 451, 489, 709 |
| Hsp92I | GRCGYC | 2 cut(s) | 480, 891 |
| Hsp92II | CATG | 7 cut(s) | 199, 211, 470, 487, 746, 878, 886 |
| HspAI | GCGC | 5 cut(s) | 48, 79, 480, 579, 861 |
| KasI | GGCGCC | 1 cut(s) | 479 |
| Kpn2I | TCCGGA | 1 cut(s) | 559 |
| Kzo9I | GATC | 2 cut(s) | 372, 800 |
| LguI | GCTCTTC | 1 cut(s) | 321 |
| LmnI | GCTCC | 5 cut(s) | 225, 601, 731, 799, 808 |
| LweI | GCATC | 1 cut(s) | 868 |
| MaeI | CTAG | 5 cut(s) | 35, 126, 534, 858, 914 |
| MaeII | ACGT | 3 cut(s) | 451, 489, 709 |
| MaeIII | GTNAC | 2 cut(s) | 5, 749 |
| MalI | GATC | 2 cut(s) | 374, 802 |
| MboI | GATC | 2 cut(s) | 372, 800 |
| MboII | GAAGA | 4 cut(s) | 308, 532, 677, 727 |
| MhlI | GDGCHC | 2 cut(s) | 474, 691 |
| MlsI | TGGCCA | 1 cut(s) | 348 |
| MluCI | AATT | 3 cut(s) | 298, 424, 625 |
| MluNI | TGGCCA | 1 cut(s) | 348 |
| Mly113I | GGCGCC | 1 cut(s) | 480 |
| MlyI | GAGTC | 1 cut(s) | 572 |
| MmeI | TCCRAC | 1 cut(s) | 762 |
| Mox20I | TGGCCA | 1 cut(s) | 348 |
| MroI | TCCGGA | 1 cut(s) | 559 |
| MroXI | GAANNNNTTC | 2 cut(s) | 137, 315 |
| MscI | TGGCCA | 1 cut(s) | 348 |
| MseI | TTAA | 3 cut(s) | 90, 297, 435 |
| MslI | CAYNNNNRTG | 5 cut(s) | 210, 788, 822, 900, 903 |
| Msp20I | TGGCCA | 1 cut(s) | 348 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 560 |
| Mva1269I | GAATGC | 1 cut(s) | 863 |
| MvnI | CGCG | 1 cut(s) | 579 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NarI | GGCGCC | 1 cut(s) | 480 |
| NcoI | CCATGG | 2 cut(s) | 742, 882 |
| NdeI | CATATG | 1 cut(s) | 646 |
| NdeII | GATC | 2 cut(s) | 372, 800 |
| NheI | GCTAGC | 1 cut(s) | 857 |
| NlaIII | CATG | 7 cut(s) | 199, 211, 470, 487, 746, 878, 886 |
| NlaIV | GGNNCC | 6 cut(s) | 481, 695, 733, 795, 810, 910 |
| PagI | TCATGA | 2 cut(s) | 195, 466 |
| PciSI | GCTCTTC | 1 cut(s) | 321 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 601 |
| PctI | GAATGC | 1 cut(s) | 863 |
| PdmI | GAANNNNTTC | 2 cut(s) | 137, 315 |
| PleI | GAGTC | 1 cut(s) | 571 |
| PluTI | GGCGCC | 1 cut(s) | 483 |
| PpsI | GAGTC | 1 cut(s) | 571 |
| PshBI | ATTAAT | 1 cut(s) | 435 |
| PsiI | TTATAA | 1 cut(s) | 303 |
| Psp124BI | GAGCTC | 1 cut(s) | 474 |
| PspN4I | GGNNCC | 6 cut(s) | 481, 695, 733, 795, 810, 910 |
| PspPI | GGNCC | 1 cut(s) | 641 |
| RseI | CAYNNNNRTG | 5 cut(s) | 210, 788, 822, 900, 903 |
| SacI | GAGCTC | 1 cut(s) | 474 |
| SapI | GCTCTTC | 1 cut(s) | 321 |
| SaqAI | TTAA | 3 cut(s) | 90, 297, 435 |
| Sau3AI | GATC | 2 cut(s) | 372, 800 |
| Sau96I | GGNCC | 1 cut(s) | 641 |
| SchI | GAGTC | 1 cut(s) | 572 |
| SduI | GDGCHC | 2 cut(s) | 474, 691 |
| SfaNI | GCATC | 1 cut(s) | 868 |
| SfcI | CTRYAG | 1 cut(s) | 571 |
| SfoI | GGCGCC | 1 cut(s) | 481 |
| SinI | GGWCC | 1 cut(s) | 641 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 210, 788, 822, 900, 903 |
| SmlI | CTYRAG | 2 cut(s) | 89, 236 |
| SmoI | CTYRAG | 2 cut(s) | 89, 236 |
| Sse9I | AATT | 3 cut(s) | 298, 424, 625 |
| SsiI | CCGC | 2 cut(s) | 271, 729 |
| SspDI | GGCGCC | 1 cut(s) | 479 |
| SspI | AATATT | 1 cut(s) | 511 |
| SspMI | CTAG | 5 cut(s) | 35, 126, 534, 858, 914 |
| SstI | GAGCTC | 1 cut(s) | 474 |
| StyI | CCWWGG | 3 cut(s) | 742, 882, 913 |
| TaaI | ACNGT | 1 cut(s) | 698 |
| TaiI | ACGT | 3 cut(s) | 454, 492, 712 |
| TaqI | TCGA | 2 cut(s) | 375, 799 |
| TasI | AATT | 3 cut(s) | 298, 424, 625 |
| Tru1I | TTAA | 3 cut(s) | 90, 297, 435 |
| Tru9I | TTAA | 3 cut(s) | 90, 297, 435 |
| TscAI | CASTG | 2 cut(s) | 414, 835 |
| TspDTI | ATGAA | 6 cut(s) | 224, 243, 308, 455, 500, 533 |
| TspGWI | ACGGA | 2 cut(s) | 706, 826 |
| TspRI | CASTG | 2 cut(s) | 414, 835 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 687 |
| VpaK11BI | GGWCC | 1 cut(s) | 641 |
| VspI | ATTAAT | 1 cut(s) | 435 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 902 |
| XmaJI | CCTAGG | 1 cut(s) | 913 |
| XmnI | GAANNNNTTC | 2 cut(s) | 137, 315 |
| XspI | CTAG | 5 cut(s) | 35, 126, 534, 858, 914 |