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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AccB1I | GGYRCC | 1 cut(s) | 6 |
| AccII | CGCG | 1 cut(s) | 74 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcsI | RAATTY | 1 cut(s) | 311 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 210 |
| AflIII | ACRYGT | 1 cut(s) | 39 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 408 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 3 cut(s) | 170, 346, 368 |
| AluI | AGCT | 3 cut(s) | 170, 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AlwI | GGATC | 1 cut(s) | 335 |
| AoxI | GGCC | 1 cut(s) | 410 |
| ApoI | RAATTY | 1 cut(s) | 311 |
| AseI | ATTAAT | 1 cut(s) | 245 |
| AspLEI | GCGC | 2 cut(s) | 9, 76 |
| BanI | GGYRCC | 1 cut(s) | 6 |
| BauI | CACGAG | 2 cut(s) | 331, 389 |
| BciVI | GTATCC | 1 cut(s) | 97 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 3 cut(s) | 57, 77, 321 |
| BfmI | CTRYAG | 2 cut(s) | 165, 363 |
| BfoI | RGCGCY | 1 cut(s) | 10 |
| BfuI | GTATCC | 1 cut(s) | 97 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| BmiI | GGNNCC | 1 cut(s) | 8 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 210 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 210 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| Bsh1236I | CGCG | 1 cut(s) | 74 |
| BshFI | GGCC | 1 cut(s) | 412 |
| BshNI | GGYRCC | 1 cut(s) | 6 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 210 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 412 |
| Bsp143I | GATC | 1 cut(s) | 327 |
| BspANI | GGCC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspFNI | CGCG | 1 cut(s) | 74 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 1 cut(s) | 8 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 6 |
| BssMI | GATC | 1 cut(s) | 327 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 2 cut(s) | 331, 389 |
| Bst2BI | CACGAG | 2 cut(s) | 331, 389 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 2 cut(s) | 277, 423 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstFNI | CGCG | 1 cut(s) | 74 |
| BstH2I | RGCGCY | 1 cut(s) | 10 |
| BstHHI | GCGC | 2 cut(s) | 9, 76 |
| BstKTI | GATC | 1 cut(s) | 330 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 327 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 82 |
| BstNSI | RCATGY | 1 cut(s) | 43 |
| BstSFI | CTRYAG | 2 cut(s) | 165, 363 |
| BstUI | CGCG | 1 cut(s) | 74 |
| BsuI | GTATCC | 1 cut(s) | 97 |
| BsuRI | GGCC | 1 cut(s) | 412 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 2 cut(s) | 9, 76 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 5 cut(s) | 13, 40, 205, 377, 434 |
| CviJI | RGCY | 4 cut(s) | 170, 346, 368, 412 |
| CviKI_1 | RGCY | 4 cut(s) | 170, 346, 368, 412 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 2 cut(s) | 277, 423 |
| DinI | GGCGCC | 1 cut(s) | 8 |
| DpnI | GATC | 1 cut(s) | 329 |
| DpnII | GATC | 1 cut(s) | 327 |
| DriI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco32I | GATATC | 1 cut(s) | 385 |
| EcoRI | GAATTC | 1 cut(s) | 311 |
| EcoRV | GATATC | 1 cut(s) | 385 |
| EgeI | GGCGCC | 1 cut(s) | 8 |
| EheI | GGCGCC | 1 cut(s) | 8 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 5 cut(s) | 16, 43, 208, 380, 437 |
| FatI | CATG | 5 cut(s) | 12, 39, 204, 376, 433 |
| FokI | GGATG | 1 cut(s) | 65 |
| FspBI | CTAG | 3 cut(s) | 57, 77, 321 |
| GlaI | GCGC | 2 cut(s) | 8, 75 |
| HaeII | RGCGCY | 1 cut(s) | 10 |
| HaeIII | GGCC | 1 cut(s) | 412 |
| HhaI | GCGC | 2 cut(s) | 9, 76 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 5 cut(s) | 16, 43, 208, 380, 437 |
| Hin6I | GCGC | 2 cut(s) | 7, 74 |
| HinP1I | GCGC | 2 cut(s) | 7, 74 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 184, 419 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 391, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4V | TGCA | 1 cut(s) | 455 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 82 |
| HpyF3I | CTNAG | 2 cut(s) | 277, 423 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 5 cut(s) | 16, 43, 208, 380, 437 |
| HspAI | GCGC | 2 cut(s) | 7, 74 |
| KasI | GGCGCC | 1 cut(s) | 6 |
| Kzo9I | GATC | 1 cut(s) | 327 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LpnPI | CCDG | 1 cut(s) | 129 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 3 cut(s) | 57, 77, 321 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 1 cut(s) | 329 |
| MboI | GATC | 1 cut(s) | 327 |
| MboII | GAAGA | 2 cut(s) | 92, 406 |
| MluCI | AATT | 9 cut(s) | 62, 178, 242, 246, 282, 311, 397, 403, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 7 |
| MnlI | CCTC | 5 cut(s) | 119, 122, 206, 398, 430 |
| MseI | TTAA | 1 cut(s) | 245 |
| MvnI | CGCG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 82 |
| NarI | GGCGCC | 1 cut(s) | 7 |
| NdeII | GATC | 1 cut(s) | 327 |
| NlaIII | CATG | 5 cut(s) | 16, 43, 208, 380, 437 |
| NlaIV | GGNNCC | 1 cut(s) | 8 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 1 cut(s) | 43 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PciI | ACATGT | 1 cut(s) | 39 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PluTI | GGCGCC | 1 cut(s) | 10 |
| PscI | ACATGT | 1 cut(s) | 39 |
| PshBI | ATTAAT | 1 cut(s) | 245 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| PspN4I | GGNNCC | 1 cut(s) | 8 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 245 |
| Sau3AI | GATC | 1 cut(s) | 327 |
| SetI | ASST | 4 cut(s) | 172, 269, 348, 370 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfcI | CTRYAG | 2 cut(s) | 165, 363 |
| SfoI | GGCGCC | 1 cut(s) | 8 |
| Sse9I | AATT | 9 cut(s) | 62, 178, 242, 246, 282, 311, 397, 403, 442 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SspDI | GGCGCC | 1 cut(s) | 6 |
| SspMI | CTAG | 3 cut(s) | 57, 77, 321 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| TaqI | TCGA | 2 cut(s) | 304, 315 |
| TasI | AATT | 9 cut(s) | 62, 178, 242, 246, 282, 311, 397, 403, 442 |
| TatI | WGTACW | 1 cut(s) | 36 |
| Tru1I | TTAA | 1 cut(s) | 245 |
| Tru9I | TTAA | 1 cut(s) | 245 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 2 cut(s) | 329, 422 |
| TspGWI | ACGGA | 2 cut(s) | 323, 340 |
| VspI | ATTAAT | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 311 |
| XceI | RCATGY | 1 cut(s) | 43 |
| XspI | CTAG | 3 cut(s) | 57, 77, 321 |