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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AatII | GACGTC | 1 cut(s) | 304 |
| AccB1I | GGYRCC | 2 cut(s) | 261, 419 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 340, 561 |
| AclWI | GGATC | 2 cut(s) | 128, 198 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 2 cut(s) | 301, 420 |
| AdeI | CACNNNGTG | 1 cut(s) | 601 |
| AgsI | TTSAA | 1 cut(s) | 457 |
| AluBI | AGCT | 3 cut(s) | 139, 149, 542 |
| AluI | AGCT | 3 cut(s) | 139, 149, 542 |
| Alw21I | GWGCWC | 1 cut(s) | 544 |
| Alw26I | GTCTC | 2 cut(s) | 73, 250 |
| AlwI | GGATC | 2 cut(s) | 128, 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 3 cut(s) | 248, 422, 463 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| BaeGI | GKGCMC | 1 cut(s) | 529 |
| BanI | GGYRCC | 2 cut(s) | 261, 419 |
| BanII | GRGCYC | 1 cut(s) | 544 |
| BauI | CACGAG | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 1 cut(s) | 544 |
| BccI | CCATC | 2 cut(s) | 73, 447 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BcoDI | GTCTC | 2 cut(s) | 73, 250 |
| BfaI | CTAG | 2 cut(s) | 405, 629 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 2 cut(s) | 423, 464 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 3 cut(s) | 263, 362, 421 |
| BmsI | GCATC | 1 cut(s) | 19 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 2 cut(s) | 301, 420 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseSI | GKGCMC | 1 cut(s) | 529 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshNI | GGYRCC | 2 cut(s) | 261, 419 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 544 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 312 |
| BsmAI | GTCTC | 2 cut(s) | 73, 250 |
| BsmBI | CGTCTC | 2 cut(s) | 73, 250 |
| BsmFI | GGGAC | 1 cut(s) | 312 |
| Bsp1286I | GDGCHC | 2 cut(s) | 529, 544 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspACI | CCGC | 2 cut(s) | 340, 561 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 2 cut(s) | 133, 169 |
| BspLI | GGNNCC | 3 cut(s) | 263, 362, 421 |
| BspMAI | CTGCAG | 1 cut(s) | 115 |
| BspPI | GGATC | 2 cut(s) | 128, 198 |
| BspT107I | GGYRCC | 2 cut(s) | 261, 419 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| BssNI | GRCGYC | 2 cut(s) | 301, 420 |
| BssSI | CACGAG | 1 cut(s) | 543 |
| BssT1I | CCWWGG | 1 cut(s) | 207 |
| Bst2BI | CACGAG | 1 cut(s) | 543 |
| Bst4CI | ACNGT | 1 cut(s) | 261 |
| Bst6I | CTCTTC | 2 cut(s) | 361, 582 |
| BstACI | GRCGYC | 2 cut(s) | 301, 420 |
| BstDEI | CTNAG | 4 cut(s) | 252, 284, 432, 465 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 2 cut(s) | 423, 464 |
| BstHHI | GCGC | 3 cut(s) | 248, 422, 463 |
| BstKTI | GATC | 5 cut(s) | 24, 123, 206, 616, 628 |
| BstMAI | GTCTC | 2 cut(s) | 73, 250 |
| BstMBI | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 458, 569, 590 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 1 cut(s) | 529 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 416 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| CciI | TCATGA | 2 cut(s) | 133, 169 |
| CfoI | GCGC | 3 cut(s) | 248, 422, 463 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CviAII | CATG | 4 cut(s) | 134, 170, 208, 410 |
| CviJI | RGCY | 6 cut(s) | 139, 149, 408, 438, 542, 593 |
| CviKI_1 | RGCY | 6 cut(s) | 139, 149, 408, 438, 542, 593 |
| DdeI | CTNAG | 4 cut(s) | 252, 284, 432, 465 |
| DinI | GGCGCC | 1 cut(s) | 421 |
| DpnI | GATC | 5 cut(s) | 23, 122, 205, 615, 627 |
| DpnII | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| DraIII | CACNNNGTG | 1 cut(s) | 601 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Eam1104I | CTCTTC | 2 cut(s) | 361, 582 |
| EarI | CTCTTC | 2 cut(s) | 361, 582 |
| Ecl136II | GAGCTC | 1 cut(s) | 542 |
| Eco130I | CCWWGG | 1 cut(s) | 207 |
| Eco24I | GRGCYC | 1 cut(s) | 544 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 1 cut(s) | 542 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoICRI | GAGCTC | 1 cut(s) | 542 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 1 cut(s) | 207 |
| EcoT38I | GRGCYC | 1 cut(s) | 544 |
| EgeI | GGCGCC | 1 cut(s) | 421 |
| EheI | GGCGCC | 1 cut(s) | 421 |
| ErhI | CCWWGG | 1 cut(s) | 207 |
| Esp3I | CGTCTC | 2 cut(s) | 73, 250 |
| FaeI | CATG | 4 cut(s) | 137, 173, 211, 413 |
| FaqI | GGGAC | 1 cut(s) | 312 |
| FatI | CATG | 4 cut(s) | 133, 169, 207, 409 |
| FriOI | GRGCYC | 1 cut(s) | 544 |
| FspBI | CTAG | 2 cut(s) | 405, 629 |
| GlaI | GCGC | 3 cut(s) | 247, 421, 462 |
| HaeII | RGCGCY | 2 cut(s) | 423, 464 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 3 cut(s) | 248, 422, 463 |
| Hin1I | GRCGYC | 2 cut(s) | 301, 420 |
| Hin1II | CATG | 4 cut(s) | 137, 173, 211, 413 |
| Hin6I | GCGC | 3 cut(s) | 246, 420, 461 |
| HinP1I | GCGC | 3 cut(s) | 246, 420, 461 |
| HinfI | GANTC | 3 cut(s) | 49, 99, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HpyAV | CCTTC | 2 cut(s) | 70, 326 |
| HpyCH4III | ACNGT | 1 cut(s) | 261 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 74, 113 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 458, 569, 590 |
| HpyF3I | CTNAG | 4 cut(s) | 252, 284, 432, 465 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92I | GRCGYC | 2 cut(s) | 301, 420 |
| Hsp92II | CATG | 4 cut(s) | 137, 173, 211, 413 |
| HspAI | GCGC | 3 cut(s) | 246, 420, 461 |
| KasI | GGCGCC | 1 cut(s) | 419 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 2 cut(s) | 99, 240 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeI | CTAG | 2 cut(s) | 405, 629 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 4 cut(s) | 106, 157, 335, 556 |
| MalI | GATC | 5 cut(s) | 23, 122, 205, 615, 627 |
| MboI | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| MboII | GAAGA | 7 cut(s) | 58, 199, 378, 560, 599, 623, 632 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 2 cut(s) | 529, 544 |
| MluCI | AATT | 6 cut(s) | 5, 196, 235, 316, 445, 552 |
| Mly113I | GGCGCC | 1 cut(s) | 420 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 5 cut(s) | 362, 382, 412, 474, 583 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 414 |
| MspI | CCGG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 458, 569, 590 |
| NarI | GGCGCC | 1 cut(s) | 420 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NdeII | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| NlaIII | CATG | 4 cut(s) | 137, 173, 211, 413 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 362, 421 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| PagI | TCATGA | 2 cut(s) | 133, 169 |
| PfeI | GAWTC | 2 cut(s) | 99, 230 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PluTI | GGCGCC | 1 cut(s) | 423 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 1 cut(s) | 544 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 362, 421 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PstI | CTGCAG | 1 cut(s) | 115 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 414 |
| SacI | GAGCTC | 1 cut(s) | 544 |
| Sau3AI | GATC | 5 cut(s) | 21, 120, 203, 613, 625 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 2 cut(s) | 529, 544 |
| SetI | ASST | 9 cut(s) | 62, 131, 141, 151, 304, 337, 373, 404, 544 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SfoI | GGCGCC | 1 cut(s) | 421 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 414 |
| Sse9I | AATT | 6 cut(s) | 5, 196, 235, 316, 445, 552 |
| SsiI | CCGC | 2 cut(s) | 340, 561 |
| SspDI | GGCGCC | 1 cut(s) | 419 |
| SspMI | CTAG | 2 cut(s) | 405, 629 |
| SstI | GAGCTC | 1 cut(s) | 544 |
| StyI | CCWWGG | 1 cut(s) | 207 |
| TaaI | ACNGT | 1 cut(s) | 261 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 4 cut(s) | 97, 102, 200, 502 |
| TasI | AATT | 6 cut(s) | 5, 196, 235, 316, 445, 552 |
| TfiI | GAWTC | 2 cut(s) | 99, 230 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 3 cut(s) | 104, 122, 167 |
| TspGWI | ACGGA | 3 cut(s) | 133, 230, 373 |
| TspRI | CASTG | 1 cut(s) | 166 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 628 |
| XspI | CTAG | 2 cut(s) | 405, 629 |
| ZraI | GACGTC | 1 cut(s) | 302 |