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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Acc16I | TGCGCA | 1 cut(s) | 584 |
| AccB1I | GGYRCC | 1 cut(s) | 261 |
| AccI | GTMKAC | 1 cut(s) | 646 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 2 cut(s) | 226, 567 |
| AciI | CCGC | 3 cut(s) | 545, 603, 657 |
| AclWI | GGATC | 1 cut(s) | 198 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 526 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 257, 574, 730 |
| AleI | CACNNNNGTG | 1 cut(s) | 29 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 500, 532 |
| AluBI | AGCT | 3 cut(s) | 139, 149, 632 |
| AluI | AGCT | 3 cut(s) | 139, 149, 632 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 3 cut(s) | 73, 688, 769 |
| AlwI | GGATC | 1 cut(s) | 198 |
| Aor13HI | TCCGGA | 2 cut(s) | 226, 567 |
| AoxI | GGCC | 1 cut(s) | 406 |
| ApeKI | GCWGC | 1 cut(s) | 629 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 248, 585 |
| AspS9I | GGNCC | 2 cut(s) | 308, 497 |
| AsuHPI | GGTGA | 1 cut(s) | 623 |
| AvaII | GGWCC | 2 cut(s) | 308, 497 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BanI | GGYRCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BbsI | GAAGAC | 2 cut(s) | 53, 774 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 1 cut(s) | 641 |
| BccI | CCATC | 2 cut(s) | 73, 471 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BclI | TGATCA | 1 cut(s) | 415 |
| BcoDI | GTCTC | 3 cut(s) | 73, 688, 769 |
| BfaI | CTAG | 2 cut(s) | 450, 749 |
| BisI | GCNGC | 1 cut(s) | 630 |
| BlsI | GCNGC | 1 cut(s) | 631 |
| Bme18I | GGWCC | 2 cut(s) | 308, 497 |
| BmgT120I | GGNCC | 2 cut(s) | 308, 497 |
| BmiI | GGNNCC | 3 cut(s) | 263, 362, 498 |
| BmsI | GCATC | 1 cut(s) | 604 |
| BpiI | GAAGAC | 2 cut(s) | 53, 774 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaWI | WCCGGW | 2 cut(s) | 226, 567 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 257, 574, 730 |
| Bse3DI | GCAATG | 1 cut(s) | 494 |
| BseAI | TCCGGA | 2 cut(s) | 226, 567 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseGI | GGATG | 2 cut(s) | 177, 418 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 257, 574, 730 |
| BseMI | GCAATG | 1 cut(s) | 494 |
| BseXI | GCAGC | 1 cut(s) | 641 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 408 |
| BshNI | GGYRCC | 1 cut(s) | 261 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsiSI | CCGG | 2 cut(s) | 227, 568 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 257, 574, 730 |
| BsmAI | GTCTC | 3 cut(s) | 73, 688, 769 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsnI | GGCC | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp13I | TCCGGA | 2 cut(s) | 226, 567 |
| Bsp1407I | TGTACA | 1 cut(s) | 524 |
| Bsp143I | GATC | 4 cut(s) | 21, 203, 415, 735 |
| BspACI | CCGC | 3 cut(s) | 545, 603, 657 |
| BspANI | GGCC | 1 cut(s) | 408 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 2 cut(s) | 226, 567 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 3 cut(s) | 263, 362, 498 |
| BspPI | GGATC | 1 cut(s) | 198 |
| BspT107I | GGYRCC | 1 cut(s) | 261 |
| BsrDI | GCAATG | 1 cut(s) | 494 |
| BsrGI | TGTACA | 1 cut(s) | 524 |
| BssMI | GATC | 4 cut(s) | 21, 203, 415, 735 |
| Bst4CI | ACNGT | 1 cut(s) | 780 |
| BstAUI | TGTACA | 1 cut(s) | 524 |
| BstC8I | GCNNGC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 3 cut(s) | 87, 284, 365 |
| BstF5I | GGATG | 2 cut(s) | 177, 418 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstHHI | GCGC | 2 cut(s) | 248, 585 |
| BstKTI | GATC | 4 cut(s) | 24, 206, 418, 738 |
| BstMAI | GTCTC | 3 cut(s) | 73, 688, 769 |
| BstMBI | GATC | 4 cut(s) | 21, 203, 415, 735 |
| BstNSI | RCATGY | 1 cut(s) | 629 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV1I | GCAGC | 1 cut(s) | 641 |
| BstV2I | GAAGAC | 2 cut(s) | 53, 774 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuRI | GGCC | 1 cut(s) | 408 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtsCI | GGATG | 2 cut(s) | 177, 418 |
| Cac8I | GCNNGC | 1 cut(s) | 627 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 248, 585 |
| Cfr13I | GGNCC | 2 cut(s) | 308, 497 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| Csp6I | GTAC | 1 cut(s) | 525 |
| CviAII | CATG | 7 cut(s) | 134, 170, 410, 493, 514, 522, 626 |
| CviJI | RGCY | 4 cut(s) | 139, 149, 408, 632 |
| CviKI_1 | RGCY | 4 cut(s) | 139, 149, 408, 632 |
| CviQI | GTAC | 1 cut(s) | 525 |
| DdeI | CTNAG | 3 cut(s) | 87, 284, 365 |
| DpnI | GATC | 4 cut(s) | 23, 205, 417, 737 |
| DpnII | GATC | 4 cut(s) | 21, 203, 415, 735 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 2 cut(s) | 308, 497 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT22I | ATGCAT | 1 cut(s) | 494 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 7 cut(s) | 137, 173, 413, 496, 517, 525, 629 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 7 cut(s) | 133, 169, 409, 492, 513, 521, 625 |
| FbaI | TGATCA | 1 cut(s) | 415 |
| FblI | GTMKAC | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 1 cut(s) | 630 |
| FokI | GGATG | 2 cut(s) | 164, 405 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 1 cut(s) | 630 |
| FspAI | RTGCGCAY | 1 cut(s) | 584 |
| FspBI | CTAG | 2 cut(s) | 450, 749 |
| FspI | TGCGCA | 1 cut(s) | 584 |
| GlaI | GCGC | 2 cut(s) | 247, 584 |
| GluI | GCNGC | 1 cut(s) | 630 |
| HaeIII | GGCC | 1 cut(s) | 408 |
| HapII | CCGG | 2 cut(s) | 227, 568 |
| HhaI | GCGC | 2 cut(s) | 248, 585 |
| Hin1II | CATG | 7 cut(s) | 137, 173, 413, 496, 517, 525, 629 |
| Hin6I | GCGC | 2 cut(s) | 246, 583 |
| HinP1I | GCGC | 2 cut(s) | 246, 583 |
| HincII | GTYRAC | 1 cut(s) | 374 |
| HindII | GTYRAC | 1 cut(s) | 374 |
| HinfI | GANTC | 6 cut(s) | 49, 99, 120, 230, 438, 696 |
| HpaII | CCGG | 2 cut(s) | 227, 568 |
| HphI | GGTGA | 1 cut(s) | 623 |
| Hpy166II | GTNNAC | 5 cut(s) | 374, 459, 527, 647, 711 |
| Hpy188III | TCNNGA | 4 cut(s) | 134, 201, 227, 568 |
| Hpy8I | GTNNAC | 5 cut(s) | 374, 459, 527, 647, 711 |
| Hpy99I | CGWCG | 1 cut(s) | 792 |
| HpyAV | CCTTC | 1 cut(s) | 326 |
| HpyCH4III | ACNGT | 1 cut(s) | 780 |
| HpyCH4IV | ACGT | 3 cut(s) | 301, 376, 683 |
| HpyCH4V | TGCA | 6 cut(s) | 113, 487, 492, 617, 629, 729 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 284, 365 |
| HpySE526I | ACGT | 3 cut(s) | 301, 376, 683 |
| Hsp92II | CATG | 7 cut(s) | 137, 173, 413, 496, 517, 525, 629 |
| HspAI | GCGC | 2 cut(s) | 246, 583 |
| Kpn2I | TCCGGA | 2 cut(s) | 226, 567 |
| Ksp22I | TGATCA | 1 cut(s) | 415 |
| Kzo9I | GATC | 4 cut(s) | 21, 203, 415, 735 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 4 cut(s) | 240, 291, 390, 581 |
| Lsp1109I | GCAGC | 1 cut(s) | 641 |
| LweI | GCATC | 1 cut(s) | 604 |
| MaeI | CTAG | 2 cut(s) | 450, 749 |
| MaeII | ACGT | 3 cut(s) | 301, 376, 683 |
| MaeIII | GTNAC | 2 cut(s) | 106, 763 |
| MalI | GATC | 4 cut(s) | 23, 205, 417, 737 |
| MboI | GATC | 4 cut(s) | 21, 203, 415, 735 |
| MboII | GAAGA | 3 cut(s) | 58, 199, 774 |
| MfeI | CAATTG | 1 cut(s) | 432 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 5 cut(s) | 5, 196, 235, 432, 639 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| MlyI | GAGTC | 2 cut(s) | 43, 690 |
| MmeI | TCCRAC | 2 cut(s) | 666, 724 |
| MnlI | CCTC | 6 cut(s) | 251, 362, 382, 386, 412, 750 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| Mph1103I | ATGCAT | 1 cut(s) | 494 |
| MroI | TCCGGA | 2 cut(s) | 226, 567 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| MseI | TTAA | 1 cut(s) | 279 |
| MslI | CAYNNNNRTG | 4 cut(s) | 29, 182, 534, 770 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MspI | CCGG | 2 cut(s) | 227, 568 |
| MunI | CAATTG | 1 cut(s) | 432 |
| MvnI | CGCG | 1 cut(s) | 246 |
| NdeII | GATC | 4 cut(s) | 21, 203, 415, 735 |
| NlaIII | CATG | 7 cut(s) | 137, 173, 413, 496, 517, 525, 629 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 362, 498 |
| NmuCI | GTSAC | 1 cut(s) | 763 |
| NsbI | TGCGCA | 1 cut(s) | 584 |
| NsiI | ATGCAT | 1 cut(s) | 494 |
| NspI | RCATGY | 1 cut(s) | 629 |
| OliI | CACNNNNGTG | 1 cut(s) | 29 |
| PaeI | GCATGC | 1 cut(s) | 629 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 4 cut(s) | 99, 120, 230, 438 |
| PkrI | GCNGC | 1 cut(s) | 631 |
| PleI | GAGTC | 2 cut(s) | 43, 690 |
| PpsI | GAGTC | 2 cut(s) | 43, 690 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 362, 498 |
| PspPI | GGNCC | 2 cut(s) | 308, 497 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RsaI | GTAC | 1 cut(s) | 526 |
| RsaNI | GTAC | 1 cut(s) | 525 |
| RseI | CAYNNNNRTG | 4 cut(s) | 29, 182, 534, 770 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| SatI | GCNGC | 1 cut(s) | 630 |
| Sau3AI | GATC | 4 cut(s) | 21, 203, 415, 735 |
| Sau96I | GGNCC | 2 cut(s) | 308, 497 |
| SchI | GAGTC | 2 cut(s) | 43, 690 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SfaNI | GCATC | 1 cut(s) | 604 |
| SinI | GGWCC | 2 cut(s) | 308, 497 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 29, 182, 534, 770 |
| SphI | GCATGC | 1 cut(s) | 629 |
| Sse9I | AATT | 5 cut(s) | 5, 196, 235, 432, 639 |
| SsiI | CCGC | 3 cut(s) | 545, 603, 657 |
| SspMI | CTAG | 2 cut(s) | 450, 749 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| TaaI | ACNGT | 1 cut(s) | 780 |
| TaiI | ACGT | 3 cut(s) | 304, 379, 686 |
| TaqI | TCGA | 6 cut(s) | 97, 102, 200, 441, 464, 475 |
| TaqII | GACCGA | 1 cut(s) | 514 |
| TasI | AATT | 5 cut(s) | 5, 196, 235, 432, 639 |
| TatI | WGTACW | 1 cut(s) | 524 |
| TfiI | GAWTC | 4 cut(s) | 99, 120, 230, 438 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TseFI | GTSAC | 1 cut(s) | 763 |
| TseI | GCWGC | 1 cut(s) | 629 |
| Tsp45I | GTSAC | 1 cut(s) | 763 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 2 cut(s) | 196, 373 |
| VpaK11BI | GGWCC | 2 cut(s) | 308, 497 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XceI | RCATGY | 1 cut(s) | 629 |
| XmiI | GTMKAC | 1 cut(s) | 646 |
| XspI | CTAG | 2 cut(s) | 450, 749 |
| Zsp2I | ATGCAT | 1 cut(s) | 494 |