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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 399 |
| AatII | GACGTC | 1 cut(s) | 397 |
| AccB1I | GGYRCC | 2 cut(s) | 354, 512 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcoI | YGGCCR | 1 cut(s) | 499 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 2 cut(s) | 355, 394 |
| AdeI | CACNNNGTG | 1 cut(s) | 694 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 350 |
| AgsI | TTSAA | 2 cut(s) | 160, 550 |
| AhlI | ACTAGT | 1 cut(s) | 646 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AleI | CACNNNNGTG | 1 cut(s) | 150 |
| AluBI | AGCT | 3 cut(s) | 64, 635, 686 |
| AluI | AGCT | 3 cut(s) | 64, 635, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 637 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 1 cut(s) | 335 |
| AoxI | GGCC | 1 cut(s) | 499 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 357 |
| AspS9I | GGNCC | 1 cut(s) | 401 |
| AvaII | GGWCC | 1 cut(s) | 401 |
| BaeGI | GKGCMC | 2 cut(s) | 343, 622 |
| BalI | TGGCCA | 1 cut(s) | 501 |
| BanI | GGYRCC | 2 cut(s) | 354, 512 |
| BanII | GRGCYC | 1 cut(s) | 637 |
| BauI | CACGAG | 1 cut(s) | 636 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 637 |
| BccI | CCATC | 3 cut(s) | 126, 280, 540 |
| BciVI | GTATCC | 1 cut(s) | 376 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BcuI | ACTAGT | 1 cut(s) | 646 |
| BfaI | CTAG | 3 cut(s) | 122, 647, 713 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 1 cut(s) | 358 |
| BfuI | GTATCC | 1 cut(s) | 376 |
| BlpI | GCTNAGC | 1 cut(s) | 137 |
| Bme18I | GGWCC | 1 cut(s) | 401 |
| BmgT120I | GGNCC | 1 cut(s) | 401 |
| BmiI | GGNNCC | 3 cut(s) | 356, 455, 514 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 2 cut(s) | 355, 394 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 350 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 350 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 2 cut(s) | 343, 622 |
| BshFI | GGCC | 1 cut(s) | 501 |
| BshNI | GGYRCC | 2 cut(s) | 354, 512 |
| BsiHKAI | GWGCWC | 1 cut(s) | 637 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 350 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 501 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 343, 622, 637 |
| Bsp143I | GATC | 3 cut(s) | 327, 610, 709 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 137 |
| BspANI | GGCC | 1 cut(s) | 501 |
| BspLI | GGNNCC | 3 cut(s) | 356, 455, 514 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 2 cut(s) | 354, 512 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssMI | GATC | 3 cut(s) | 327, 610, 709 |
| BssNI | GRCGYC | 2 cut(s) | 355, 394 |
| BssSI | CACGAG | 1 cut(s) | 636 |
| Bst2BI | CACGAG | 1 cut(s) | 636 |
| Bst4CI | ACNGT | 1 cut(s) | 319 |
| Bst6I | CTCTTC | 1 cut(s) | 454 |
| BstACI | GRCGYC | 2 cut(s) | 355, 394 |
| BstC8I | GCNNGC | 1 cut(s) | 658 |
| BstDEI | CTNAG | 4 cut(s) | 137, 294, 377, 525 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 358 |
| BstHHI | GCGC | 1 cut(s) | 357 |
| BstKTI | GATC | 3 cut(s) | 330, 613, 712 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 3 cut(s) | 327, 610, 709 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 361, 683 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 2 cut(s) | 343, 622 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 509 |
| BsuI | GTATCC | 1 cut(s) | 376 |
| BsuRI | GGCC | 1 cut(s) | 501 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| BtsI | GCAGTG | 1 cut(s) | 651 |
| BtsIMutI | CAGTG | 1 cut(s) | 651 |
| Cac8I | GCNNGC | 1 cut(s) | 658 |
| CfoI | GCGC | 1 cut(s) | 357 |
| Cfr13I | GGNCC | 1 cut(s) | 401 |
| CseI | GACGC | 1 cut(s) | 551 |
| CviAII | CATG | 1 cut(s) | 503 |
| CviJI | RGCY | 8 cut(s) | 64, 136, 141, 445, 501, 531, 635, 686 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 136, 141, 445, 501, 531, 635, 686 |
| DdeI | CTNAG | 4 cut(s) | 137, 294, 377, 525 |
| DinI | GGCGCC | 1 cut(s) | 356 |
| DpnI | GATC | 3 cut(s) | 329, 612, 711 |
| DpnII | GATC | 3 cut(s) | 327, 610, 709 |
| DraIII | CACNNNGTG | 1 cut(s) | 694 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 399 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 399 |
| EaeI | YGGCCR | 1 cut(s) | 499 |
| Eam1104I | CTCTTC | 1 cut(s) | 454 |
| EarI | CTCTTC | 1 cut(s) | 454 |
| Ecl136II | GAGCTC | 1 cut(s) | 635 |
| Eco24I | GRGCYC | 1 cut(s) | 637 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 401 |
| Eco53kI | GAGCTC | 1 cut(s) | 635 |
| EcoICRI | GAGCTC | 1 cut(s) | 635 |
| EcoT38I | GRGCYC | 1 cut(s) | 637 |
| EgeI | GGCGCC | 1 cut(s) | 356 |
| EheI | GGCGCC | 1 cut(s) | 356 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 1 cut(s) | 506 |
| FatI | CATG | 1 cut(s) | 502 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 1 cut(s) | 637 |
| FspBI | CTAG | 3 cut(s) | 122, 647, 713 |
| GlaI | GCGC | 1 cut(s) | 356 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 358 |
| HaeIII | GGCC | 1 cut(s) | 501 |
| HgaI | GACGC | 1 cut(s) | 551 |
| HhaI | GCGC | 1 cut(s) | 357 |
| Hin1I | GRCGYC | 2 cut(s) | 355, 394 |
| Hin1II | CATG | 1 cut(s) | 506 |
| Hin6I | GCGC | 1 cut(s) | 355 |
| HinP1I | GCGC | 1 cut(s) | 355 |
| HincII | GTYRAC | 1 cut(s) | 467 |
| HindII | GTYRAC | 1 cut(s) | 467 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 104, 256, 306 |
| Hpy166II | GTNNAC | 2 cut(s) | 431, 467 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 610 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 170, 390, 594, 638, 713 |
| Hpy8I | GTNNAC | 2 cut(s) | 431, 467 |
| HpyAV | CCTTC | 3 cut(s) | 152, 277, 419 |
| HpyCH4III | ACNGT | 1 cut(s) | 319 |
| HpyCH4IV | ACGT | 3 cut(s) | 96, 394, 469 |
| HpyCH4V | TGCA | 1 cut(s) | 660 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 361, 683 |
| HpyF3I | CTNAG | 4 cut(s) | 137, 294, 377, 525 |
| HpySE526I | ACGT | 3 cut(s) | 96, 394, 469 |
| Hsp92I | GRCGYC | 2 cut(s) | 355, 394 |
| Hsp92II | CATG | 1 cut(s) | 506 |
| HspAI | GCGC | 1 cut(s) | 355 |
| KasI | GGCGCC | 1 cut(s) | 354 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| Kzo9I | GATC | 3 cut(s) | 327, 610, 709 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 122, 129, 375, 483, 670 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 3 cut(s) | 122, 647, 713 |
| MaeII | ACGT | 3 cut(s) | 96, 394, 469 |
| MaeIII | GTNAC | 5 cut(s) | 92, 101, 313, 488, 649 |
| MalI | GATC | 3 cut(s) | 329, 612, 711 |
| MboI | GATC | 3 cut(s) | 327, 610, 709 |
| MboII | GAAGA | 7 cut(s) | 59, 62, 92, 265, 471, 653, 716 |
| MhlI | GDGCHC | 3 cut(s) | 343, 622, 637 |
| MlsI | TGGCCA | 1 cut(s) | 501 |
| MluCI | AATT | 2 cut(s) | 125, 212 |
| MluNI | TGGCCA | 1 cut(s) | 501 |
| Mly113I | GGCGCC | 1 cut(s) | 355 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 300 |
| MnlI | CCTC | 6 cut(s) | 344, 455, 475, 479, 505, 567 |
| Mox20I | TGGCCA | 1 cut(s) | 501 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 501 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 150, 507, 537 |
| Msp20I | TGGCCA | 1 cut(s) | 501 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 361, 683 |
| NarI | GGCGCC | 1 cut(s) | 355 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 327, 610, 709 |
| NlaIII | CATG | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 3 cut(s) | 356, 455, 514 |
| NmuCI | GTSAC | 2 cut(s) | 101, 649 |
| OliI | CACNNNNGTG | 1 cut(s) | 150 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 300 |
| PluTI | GGCGCC | 1 cut(s) | 358 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 300 |
| Psp124BI | GAGCTC | 1 cut(s) | 637 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 3 cut(s) | 356, 455, 514 |
| PspPI | GGNCC | 1 cut(s) | 401 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 150, 507, 537 |
| SacI | GAGCTC | 1 cut(s) | 637 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 327, 610, 709 |
| Sau96I | GGNCC | 1 cut(s) | 401 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 300 |
| SduI | GDGCHC | 3 cut(s) | 343, 622, 637 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfoI | GGCGCC | 1 cut(s) | 356 |
| SinI | GGWCC | 1 cut(s) | 401 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 150, 507, 537 |
| SpeI | ACTAGT | 1 cut(s) | 646 |
| Sse9I | AATT | 2 cut(s) | 125, 212 |
| SspDI | GGCGCC | 1 cut(s) | 354 |
| SspI | AATATT | 1 cut(s) | 87 |
| SspMI | CTAG | 3 cut(s) | 122, 647, 713 |
| SstI | GAGCTC | 1 cut(s) | 637 |
| TaaI | ACNGT | 1 cut(s) | 319 |
| TaiI | ACGT | 3 cut(s) | 99, 397, 472 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 309, 595 |
| TasI | AATT | 2 cut(s) | 125, 212 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TscAI | CASTG | 1 cut(s) | 658 |
| TseFI | GTSAC | 2 cut(s) | 101, 649 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 649 |
| TspDTI | ATGAA | 2 cut(s) | 56, 60 |
| TspGWI | ACGGA | 2 cut(s) | 340, 466 |
| TspRI | CASTG | 1 cut(s) | 658 |
| VpaK11BI | GGWCC | 1 cut(s) | 401 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 712 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 122, 647, 713 |
| ZraI | GACGTC | 1 cut(s) | 395 |