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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 534, 708 |
| AccIII | TCCGGA | 1 cut(s) | 514 |
| AciI | CCGC | 2 cut(s) | 46, 628 |
| AcsI | RAATTY | 1 cut(s) | 395 |
| AfaI | GTAC | 1 cut(s) | 215 |
| AgsI | TTSAA | 2 cut(s) | 343, 367 |
| AjiI | CACGTC | 1 cut(s) | 103 |
| AjnI | CCWGG | 1 cut(s) | 791 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 4 cut(s) | 122, 128, 427, 437 |
| AluI | AGCT | 4 cut(s) | 122, 128, 427, 437 |
| Alw21I | GWGCWC | 2 cut(s) | 429, 510 |
| Alw26I | GTCTC | 1 cut(s) | 259 |
| Ama87I | CYCGRG | 1 cut(s) | 86 |
| Aor13HI | TCCGGA | 1 cut(s) | 514 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ApoI | RAATTY | 1 cut(s) | 395 |
| AspLEI | GCGC | 3 cut(s) | 330, 536, 710 |
| AspS9I | GGNCC | 1 cut(s) | 773 |
| AvaI | CYCGRG | 1 cut(s) | 86 |
| AvaII | GGWCC | 1 cut(s) | 773 |
| BanII | GRGCYC | 2 cut(s) | 429, 552 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| Bbv12I | GWGCWC | 2 cut(s) | 429, 510 |
| BbvI | GCAGC | 1 cut(s) | 158 |
| BccI | CCATC | 3 cut(s) | 59, 182, 309 |
| BciT130I | CCWGG | 1 cut(s) | 793 |
| BciVI | GTATCC | 1 cut(s) | 571 |
| BcoDI | GTCTC | 1 cut(s) | 259 |
| BfaI | CTAG | 3 cut(s) | 74, 93, 305 |
| BfuI | GTATCC | 1 cut(s) | 571 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 155 |
| BglII | AGATCT | 1 cut(s) | 491 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| Bme1390I | CCNGG | 1 cut(s) | 793 |
| Bme18I | GGWCC | 1 cut(s) | 773 |
| BmeT110I | CYCGRG | 1 cut(s) | 86 |
| BmgBI | CACGTC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 773 |
| BmiI | GGNNCC | 2 cut(s) | 551, 650 |
| BmrFI | CCNGG | 1 cut(s) | 793 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 2 cut(s) | 41, 108 |
| BsaI | GGTCTC | 1 cut(s) | 259 |
| BsaJI | CCNNGG | 1 cut(s) | 792 |
| BsaWI | WCCGGW | 1 cut(s) | 514 |
| Bse1I | ACTGG | 3 cut(s) | 16, 49, 211 |
| BseAI | TCCGGA | 1 cut(s) | 514 |
| BseBI | CCWGG | 1 cut(s) | 793 |
| BseDI | CCNNGG | 1 cut(s) | 792 |
| BseGI | GGATG | 3 cut(s) | 177, 205, 465 |
| BseNI | ACTGG | 3 cut(s) | 16, 49, 211 |
| BseXI | GCAGC | 1 cut(s) | 158 |
| Bsh1236I | CGCG | 2 cut(s) | 534, 708 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 2 cut(s) | 429, 510 |
| BsiHKCI | CYCGRG | 1 cut(s) | 86 |
| BsiSI | CCGG | 1 cut(s) | 515 |
| BsmAI | GTCTC | 1 cut(s) | 259 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bso31I | GGTCTC | 1 cut(s) | 259 |
| BsoBI | CYCGRG | 1 cut(s) | 86 |
| Bsp1286I | GDGCHC | 3 cut(s) | 429, 510, 552 |
| Bsp13I | TCCGGA | 1 cut(s) | 514 |
| Bsp143I | GATC | 2 cut(s) | 408, 491 |
| BspACI | CCGC | 2 cut(s) | 46, 628 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspEI | TCCGGA | 1 cut(s) | 514 |
| BspFNI | CGCG | 2 cut(s) | 534, 708 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 2 cut(s) | 551, 650 |
| BspTNI | GGTCTC | 1 cut(s) | 259 |
| BsrI | ACTGG | 3 cut(s) | 16, 49, 211 |
| BssECI | CCNNGG | 1 cut(s) | 792 |
| BssMI | GATC | 2 cut(s) | 408, 491 |
| Bst2UI | CCWGG | 1 cut(s) | 793 |
| Bst4CI | ACNGT | 1 cut(s) | 112 |
| Bst6I | CTCTTC | 1 cut(s) | 649 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 325 |
| BstC8I | GCNNGC | 2 cut(s) | 120, 326 |
| BstDEI | CTNAG | 3 cut(s) | 151, 540, 749 |
| BstEII | GGTNACC | 1 cut(s) | 623 |
| BstF5I | GGATG | 3 cut(s) | 177, 205, 465 |
| BstFNI | CGCG | 2 cut(s) | 534, 708 |
| BstHHI | GCGC | 3 cut(s) | 330, 536, 710 |
| BstKTI | GATC | 2 cut(s) | 411, 494 |
| BstMAI | GTCTC | 1 cut(s) | 259 |
| BstMBI | GATC | 2 cut(s) | 408, 491 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 134, 143, 155, 164, 325, 556 |
| BstNI | CCWGG | 1 cut(s) | 793 |
| BstNSI | RCATGY | 1 cut(s) | 328 |
| BstPI | GGTNACC | 1 cut(s) | 623 |
| BstSCI | CCNGG | 1 cut(s) | 791 |
| BstUI | CGCG | 2 cut(s) | 534, 708 |
| BstV1I | GCAGC | 1 cut(s) | 158 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 1 cut(s) | 491 |
| BstYI | RGATCY | 1 cut(s) | 491 |
| BsuI | GTATCC | 1 cut(s) | 571 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtrI | CACGTC | 1 cut(s) | 103 |
| BtsCI | GGATG | 3 cut(s) | 177, 205, 465 |
| Cac8I | GCNNGC | 2 cut(s) | 120, 326 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CfoI | GCGC | 3 cut(s) | 330, 536, 710 |
| Cfr13I | GGNCC | 1 cut(s) | 773 |
| Csp6I | GTAC | 1 cut(s) | 214 |
| CviAII | CATG | 3 cut(s) | 325, 422, 458 |
| CviQI | GTAC | 1 cut(s) | 214 |
| DdeI | CTNAG | 3 cut(s) | 151, 540, 749 |
| DpnI | GATC | 2 cut(s) | 410, 493 |
| DpnII | GATC | 2 cut(s) | 408, 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 649 |
| EarI | CTCTTC | 1 cut(s) | 649 |
| EciI | GGCGGA | 1 cut(s) | 35 |
| Ecl136II | GAGCTC | 1 cut(s) | 427 |
| Eco24I | GRGCYC | 2 cut(s) | 429, 552 |
| Eco31I | GGTCTC | 1 cut(s) | 259 |
| Eco32I | GATATC | 1 cut(s) | 23 |
| Eco47I | GGWCC | 1 cut(s) | 773 |
| Eco53kI | GAGCTC | 1 cut(s) | 427 |
| Eco88I | CYCGRG | 1 cut(s) | 86 |
| Eco91I | GGTNACC | 1 cut(s) | 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 427 |
| EcoO65I | GGTNACC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 1 cut(s) | 791 |
| EcoRV | GATATC | 1 cut(s) | 23 |
| EcoT38I | GRGCYC | 2 cut(s) | 429, 552 |
| FaeI | CATG | 3 cut(s) | 328, 425, 461 |
| FatI | CATG | 3 cut(s) | 324, 421, 457 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| FokI | GGATG | 3 cut(s) | 164, 212, 452 |
| FriOI | GRGCYC | 2 cut(s) | 429, 552 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| FspBI | CTAG | 3 cut(s) | 74, 93, 305 |
| GlaI | GCGC | 3 cut(s) | 329, 535, 709 |
| GluI | GCNGC | 1 cut(s) | 147 |
| GsuI | CTGGAG | 1 cut(s) | 194 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| HapII | CCGG | 1 cut(s) | 515 |
| HhaI | GCGC | 3 cut(s) | 330, 536, 710 |
| Hin1II | CATG | 3 cut(s) | 328, 425, 461 |
| Hin6I | GCGC | 3 cut(s) | 328, 534, 708 |
| HinP1I | GCGC | 3 cut(s) | 328, 534, 708 |
| HindIII | AAGCTT | 1 cut(s) | 126 |
| HinfI | GANTC | 5 cut(s) | 69, 82, 187, 203, 518 |
| HpaII | CCGG | 1 cut(s) | 515 |
| Hpy166II | GTNNAC | 2 cut(s) | 404, 662 |
| Hpy188III | TCNNGA | 6 cut(s) | 86, 353, 422, 489, 515, 585 |
| Hpy8I | GTNNAC | 2 cut(s) | 404, 662 |
| HpyAV | CCTTC | 4 cut(s) | 237, 614, 674, 791 |
| HpyCH4III | ACNGT | 1 cut(s) | 112 |
| HpyCH4IV | ACGT | 4 cut(s) | 102, 279, 589, 664 |
| HpyCH4V | TGCA | 1 cut(s) | 378 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 134, 143, 155, 164, 325, 556 |
| HpyF3I | CTNAG | 3 cut(s) | 151, 540, 749 |
| HpySE526I | ACGT | 4 cut(s) | 102, 279, 589, 664 |
| Hsp92II | CATG | 3 cut(s) | 328, 425, 461 |
| HspAI | GCGC | 3 cut(s) | 328, 534, 708 |
| Kpn2I | TCCGGA | 1 cut(s) | 514 |
| Kzo9I | GATC | 2 cut(s) | 408, 491 |
| LmnI | GCTCC | 3 cut(s) | 213, 434, 555 |
| Lsp1109I | GCAGC | 1 cut(s) | 158 |
| MaeI | CTAG | 3 cut(s) | 74, 93, 305 |
| MaeII | ACGT | 4 cut(s) | 102, 279, 589, 664 |
| MaeIII | GTNAC | 3 cut(s) | 275, 284, 623 |
| MalI | GATC | 2 cut(s) | 410, 493 |
| MboI | GATC | 2 cut(s) | 408, 491 |
| MboII | GAAGA | 3 cut(s) | 242, 245, 666 |
| MflI | RGATCY | 1 cut(s) | 491 |
| MhlI | GDGCHC | 3 cut(s) | 429, 510, 552 |
| MluCI | AATT | 5 cut(s) | 395, 484, 523, 568, 697 |
| MlyI | GAGTC | 1 cut(s) | 181 |
| MnlI | CCTC | 7 cut(s) | 148, 539, 547, 650, 670, 713, 758 |
| MroI | TCCGGA | 1 cut(s) | 514 |
| MseI | TTAA | 2 cut(s) | 381, 389 |
| MslI | CAYNNNNRTG | 3 cut(s) | 182, 198, 470 |
| MspI | CCGG | 1 cut(s) | 515 |
| MspR9I | CCNGG | 1 cut(s) | 793 |
| MvaI | CCWGG | 1 cut(s) | 793 |
| MvnI | CGCG | 2 cut(s) | 534, 708 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 134, 143, 155, 164, 325, 556 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 408, 491 |
| NlaIII | CATG | 3 cut(s) | 328, 425, 461 |
| NlaIV | GGNNCC | 2 cut(s) | 551, 650 |
| NmuCI | GTSAC | 1 cut(s) | 284 |
| NspI | RCATGY | 1 cut(s) | 328 |
| PaeI | GCATGC | 1 cut(s) | 328 |
| PaeR7I | CTCGAG | 1 cut(s) | 86 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PfeI | GAWTC | 4 cut(s) | 69, 82, 203, 518 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 181 |
| PpsI | GAGTC | 1 cut(s) | 181 |
| Psp124BI | GAGCTC | 1 cut(s) | 429 |
| Psp6I | CCWGG | 1 cut(s) | 791 |
| PspEI | GGTNACC | 1 cut(s) | 623 |
| PspGI | CCWGG | 1 cut(s) | 791 |
| PspN4I | GGNNCC | 2 cut(s) | 551, 650 |
| PspPI | GGNCC | 1 cut(s) | 773 |
| PsuI | RGATCY | 1 cut(s) | 491 |
| RsaI | GTAC | 1 cut(s) | 215 |
| RsaNI | GTAC | 1 cut(s) | 214 |
| RseI | CAYNNNNRTG | 3 cut(s) | 182, 198, 470 |
| SacI | GAGCTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 2 cut(s) | 381, 389 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau3AI | GATC | 2 cut(s) | 408, 491 |
| Sau96I | GGNCC | 1 cut(s) | 773 |
| SchI | GAGTC | 1 cut(s) | 181 |
| ScrFI | CCNGG | 1 cut(s) | 793 |
| SduI | GDGCHC | 3 cut(s) | 429, 510, 552 |
| Sfr274I | CTCGAG | 1 cut(s) | 86 |
| SinI | GGWCC | 1 cut(s) | 773 |
| SlaI | CTCGAG | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 182, 198, 470 |
| SmlI | CTYRAG | 3 cut(s) | 56, 86, 123 |
| SmoI | CTYRAG | 3 cut(s) | 56, 86, 123 |
| SphI | GCATGC | 1 cut(s) | 328 |
| Sse9I | AATT | 5 cut(s) | 395, 484, 523, 568, 697 |
| SsiI | CCGC | 2 cut(s) | 46, 628 |
| SspMI | CTAG | 3 cut(s) | 74, 93, 305 |
| SstI | GAGCTC | 1 cut(s) | 429 |
| StyD4I | CCNGG | 1 cut(s) | 791 |
| TaaI | ACNGT | 1 cut(s) | 112 |
| TaiI | ACGT | 4 cut(s) | 105, 282, 592, 667 |
| TaqI | TCGA | 4 cut(s) | 87, 261, 488, 640 |
| TasI | AATT | 5 cut(s) | 395, 484, 523, 568, 697 |
| TfiI | GAWTC | 4 cut(s) | 69, 82, 203, 518 |
| Tru1I | TTAA | 2 cut(s) | 381, 389 |
| Tru9I | TTAA | 2 cut(s) | 381, 389 |
| TseFI | GTSAC | 1 cut(s) | 284 |
| TseI | GCWGC | 1 cut(s) | 146 |
| Tsp45I | GTSAC | 1 cut(s) | 284 |
| TspDTI | ATGAA | 5 cut(s) | 239, 243, 410, 455, 588 |
| TspGWI | ACGGA | 2 cut(s) | 272, 661 |
| VpaK11BI | GGWCC | 1 cut(s) | 773 |
| XapI | RAATTY | 1 cut(s) | 395 |
| XceI | RCATGY | 1 cut(s) | 328 |
| XhoI | CTCGAG | 1 cut(s) | 86 |
| XspI | CTAG | 3 cut(s) | 74, 93, 305 |