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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AccII | CGCG | 2 cut(s) | 218, 404 |
| AciI | CCGC | 1 cut(s) | 340 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 415, 486 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 534 |
| AgsI | TTSAA | 3 cut(s) | 22, 167, 355 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 449, 481 |
| AluBI | AGCT | 3 cut(s) | 155, 179, 259 |
| AluI | AGCT | 3 cut(s) | 155, 179, 259 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 516 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| Alw44I | GTGCAC | 1 cut(s) | 512 |
| Ama87I | CYCGRG | 1 cut(s) | 35 |
| AoxI | GGCC | 1 cut(s) | 183 |
| ApaLI | GTGCAC | 1 cut(s) | 512 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| AspLEI | GCGC | 4 cut(s) | 50, 81, 220, 406 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuC2I | CCSGG | 1 cut(s) | 126 |
| AvaI | CYCGRG | 1 cut(s) | 35 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| AxyI | CCTNAGG | 1 cut(s) | 437 |
| BaeGI | GKGCMC | 1 cut(s) | 516 |
| BanII | GRGCYC | 1 cut(s) | 126 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 516 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 3 cut(s) | 92, 122, 321 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcnI | CCSGG | 1 cut(s) | 126 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 1 cut(s) | 272 |
| BfmI | CTRYAG | 1 cut(s) | 396 |
| BfoI | RGCGCY | 1 cut(s) | 51 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 1 cut(s) | 126 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 68, 520 |
| BmrFI | CCNGG | 1 cut(s) | 126 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BpuMI | CCSGG | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 1 cut(s) | 522 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 241, 415, 486 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse21I | CCTNAGG | 1 cut(s) | 437 |
| BseDI | CCNNGG | 1 cut(s) | 522 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 415, 486 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 516 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 2 cut(s) | 218, 404 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 516 |
| BsiHKCI | CYCGRG | 1 cut(s) | 35 |
| BsiSI | CCGG | 1 cut(s) | 126 |
| BslFI | GGGAC | 1 cut(s) | 460 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 415, 486 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 1 cut(s) | 460 |
| BsnI | GGCC | 1 cut(s) | 185 |
| BsoBI | CYCGRG | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 3 cut(s) | 126, 141, 516 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspFNI | CGCG | 2 cut(s) | 218, 404 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 2 cut(s) | 68, 520 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 522 |
| Bst4CI | ACNGT | 1 cut(s) | 523 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 512 |
| BstDEI | CTNAG | 2 cut(s) | 180, 437 |
| BstDSI | CCRYGG | 1 cut(s) | 522 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 2 cut(s) | 218, 404 |
| BstH2I | RGCGCY | 1 cut(s) | 51 |
| BstHHI | GCGC | 4 cut(s) | 50, 81, 220, 406 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstSCI | CCNGG | 1 cut(s) | 124 |
| BstSFI | CTRYAG | 1 cut(s) | 396 |
| BstSLI | GKGCMC | 1 cut(s) | 516 |
| BstUI | CGCG | 2 cut(s) | 218, 404 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| Bsu36I | CCTNAGG | 1 cut(s) | 437 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 522 |
| BtgZI | GCGATG | 1 cut(s) | 340 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 512 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 4 cut(s) | 50, 81, 220, 406 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 2 cut(s) | 224, 428 |
| CviAII | CATG | 2 cut(s) | 196, 208 |
| CviJI | RGCY | 6 cut(s) | 124, 155, 179, 185, 259, 336 |
| CviKI_1 | RGCY | 6 cut(s) | 124, 155, 179, 185, 259, 336 |
| DdeI | CTNAG | 2 cut(s) | 180, 437 |
| Eco24I | GRGCYC | 1 cut(s) | 126 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco81I | CCTNAGG | 1 cut(s) | 437 |
| Eco88I | CYCGRG | 1 cut(s) | 35 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoT38I | GRGCYC | 1 cut(s) | 126 |
| FaeI | CATG | 2 cut(s) | 199, 211 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 460 |
| FatI | CATG | 2 cut(s) | 195, 207 |
| FauNDI | CATATG | 1 cut(s) | 471 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 1 cut(s) | 272 |
| GlaI | GCGC | 4 cut(s) | 49, 80, 219, 405 |
| GluI | GCNGC | 1 cut(s) | 278 |
| HaeII | RGCGCY | 1 cut(s) | 51 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| HapII | CCGG | 1 cut(s) | 126 |
| HgaI | GACGC | 2 cut(s) | 224, 428 |
| HhaI | GCGC | 4 cut(s) | 50, 81, 220, 406 |
| Hin1II | CATG | 2 cut(s) | 199, 211 |
| Hin6I | GCGC | 4 cut(s) | 48, 79, 218, 404 |
| HinP1I | GCGC | 4 cut(s) | 48, 79, 218, 404 |
| HincII | GTYRAC | 1 cut(s) | 532 |
| HindII | GTYRAC | 1 cut(s) | 532 |
| HinfI | GANTC | 2 cut(s) | 299, 388 |
| HpaII | CCGG | 1 cut(s) | 126 |
| Hpy166II | GTNNAC | 2 cut(s) | 514, 532 |
| Hpy188I | TCNGA | 2 cut(s) | 71, 132 |
| Hpy188III | TCNNGA | 7 cut(s) | 37, 107, 196, 296, 311, 385, 455 |
| Hpy8I | GTNNAC | 2 cut(s) | 514, 532 |
| HpyAV | CCTTC | 1 cut(s) | 484 |
| HpyCH4III | ACNGT | 1 cut(s) | 523 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 291, 534 |
| HpyCH4V | TGCA | 1 cut(s) | 514 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 437 |
| HpySE526I | ACGT | 3 cut(s) | 135, 291, 534 |
| Hsp92II | CATG | 2 cut(s) | 199, 211 |
| HspAI | GCGC | 4 cut(s) | 48, 79, 218, 404 |
| LmnI | GCTCC | 2 cut(s) | 225, 426 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 92, 139, 317, 324, 370, 440 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 1 cut(s) | 272 |
| MaeII | ACGT | 3 cut(s) | 135, 291, 534 |
| MaeIII | GTNAC | 2 cut(s) | 5, 296 |
| MboII | GAAGA | 1 cut(s) | 257 |
| MhlI | GDGCHC | 3 cut(s) | 126, 141, 516 |
| MluCI | AATT | 3 cut(s) | 102, 189, 450 |
| MlyI | GAGTC | 2 cut(s) | 293, 397 |
| MnlI | CCTC | 7 cut(s) | 235, 245, 347, 409, 480, 500, 520 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 126 |
| MspR9I | CCNGG | 1 cut(s) | 126 |
| MvnI | CGCG | 2 cut(s) | 218, 404 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NciI | CCSGG | 1 cut(s) | 126 |
| NdeI | CATATG | 1 cut(s) | 471 |
| NlaIII | CATG | 2 cut(s) | 199, 211 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 520 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 426 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 2 cut(s) | 293, 396 |
| PpsI | GAGTC | 2 cut(s) | 293, 396 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 520 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 2 cut(s) | 293, 397 |
| ScrFI | CCNGG | 1 cut(s) | 126 |
| SduI | GDGCHC | 3 cut(s) | 126, 141, 516 |
| SfcI | CTRYAG | 1 cut(s) | 396 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 2 cut(s) | 35, 89 |
| SmoI | CTYRAG | 2 cut(s) | 35, 89 |
| Sse9I | AATT | 3 cut(s) | 102, 189, 450 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspMI | CTAG | 1 cut(s) | 272 |
| StyD4I | CCNGG | 1 cut(s) | 124 |
| TaaI | ACNGT | 1 cut(s) | 523 |
| TaiI | ACGT | 3 cut(s) | 138, 294, 537 |
| TaqI | TCGA | 2 cut(s) | 36, 147 |
| TasI | AATT | 3 cut(s) | 102, 189, 450 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| TspGWI | ACGGA | 1 cut(s) | 531 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 512 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XspI | CTAG | 1 cut(s) | 272 |