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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 318, 363 |
| Acc36I | ACCTGC | 1 cut(s) | 562 |
| AccB1I | GGYRCC | 2 cut(s) | 381, 524 |
| AccI | GTMKAC | 1 cut(s) | 705 |
| AciI | CCGC | 3 cut(s) | 424, 458, 789 |
| AclWI | GGATC | 1 cut(s) | 622 |
| AcoI | YGGCCR | 1 cut(s) | 511 |
| AcuI | CTGAAG | 1 cut(s) | 786 |
| AcyI | GRCGYC | 2 cut(s) | 7, 382 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 377, 378, 392, 433, 486, 515, 538 |
| AflIII | ACRYGT | 3 cut(s) | 39, 226, 464 |
| AgsI | TTSAA | 8 cut(s) | 124, 131, 160, 173, 324, 577, 634, 760 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| AjnI | CCWGG | 2 cut(s) | 432, 508 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 6 cut(s) | 64, 188, 244, 281, 662, 764 |
| AluI | AGCT | 6 cut(s) | 64, 188, 244, 281, 662, 764 |
| Alw21I | GWGCWC | 2 cut(s) | 568, 780 |
| Alw44I | GTGCAC | 1 cut(s) | 776 |
| AlwI | GGATC | 1 cut(s) | 622 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| AoxI | GGCC | 2 cut(s) | 326, 511 |
| ApaLI | GTGCAC | 1 cut(s) | 776 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 536 |
| AspLEI | GCGC | 3 cut(s) | 76, 87, 384 |
| AspS9I | GGNCC | 2 cut(s) | 327, 685 |
| AsuHPI | GGTGA | 2 cut(s) | 736, 740 |
| AvaII | GGWCC | 1 cut(s) | 685 |
| AvrII | CCTAGG | 1 cut(s) | 536 |
| AxyI | CCTNAGG | 1 cut(s) | 689 |
| BaeGI | GKGCMC | 1 cut(s) | 780 |
| BanI | GGYRCC | 2 cut(s) | 381, 524 |
| BauI | CACGAG | 1 cut(s) | 305 |
| BbsI | GAAGAC | 1 cut(s) | 774 |
| Bbv12I | GWGCWC | 2 cut(s) | 568, 780 |
| BccI | CCATC | 1 cut(s) | 719 |
| BceAI | ACGGC | 1 cut(s) | 498 |
| BciT130I | CCWGG | 2 cut(s) | 434, 510 |
| BciVI | GTATCC | 2 cut(s) | 454, 515 |
| BfaI | CTAG | 3 cut(s) | 77, 537, 659 |
| BfoI | RGCGCY | 3 cut(s) | 77, 88, 385 |
| BfuAI | ACCTGC | 1 cut(s) | 562 |
| BfuI | GTATCC | 2 cut(s) | 454, 515 |
| BisI | GCNGC | 1 cut(s) | 789 |
| BlnI | CCTAGG | 1 cut(s) | 536 |
| BlsI | GCNGC | 1 cut(s) | 790 |
| Bme1390I | CCNGG | 2 cut(s) | 434, 510 |
| Bme18I | GGWCC | 1 cut(s) | 685 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| BmgT120I | GGNCC | 2 cut(s) | 327, 685 |
| BmiI | GGNNCC | 3 cut(s) | 383, 526, 686 |
| BmrFI | CCNGG | 2 cut(s) | 434, 510 |
| BmsI | GCATC | 2 cut(s) | 43, 775 |
| BpiI | GAAGAC | 1 cut(s) | 774 |
| Bsa29I | ATCGAT | 1 cut(s) | 607 |
| BsaBI | GATNNNNATC | 2 cut(s) | 613, 738 |
| BsaHI | GRCGYC | 2 cut(s) | 7, 382 |
| BsaJI | CCNNGG | 3 cut(s) | 508, 514, 536 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 481, 511 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 377, 378, 392, 433, 486, 515, 538 |
| Bse21I | CCTNAGG | 1 cut(s) | 689 |
| Bse3DI | GCAATG | 3 cut(s) | 100, 481, 644 |
| Bse8I | GATNNNNATC | 2 cut(s) | 613, 738 |
| BseBI | CCWGG | 2 cut(s) | 434, 510 |
| BseCI | ATCGAT | 1 cut(s) | 607 |
| BseDI | CCNNGG | 3 cut(s) | 508, 514, 536 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseJI | GATNNNNATC | 2 cut(s) | 613, 738 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 377, 378, 392, 433, 486, 515, 538 |
| BseMI | GCAATG | 3 cut(s) | 100, 481, 644 |
| BseMII | CTCAG | 2 cut(s) | 40, 680 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 1 cut(s) | 780 |
| BsgI | GTGCAG | 2 cut(s) | 128, 540 |
| BshFI | GGCC | 2 cut(s) | 328, 513 |
| BshNI | GGYRCC | 2 cut(s) | 381, 524 |
| BshVI | ATCGAT | 1 cut(s) | 607 |
| BsiHKAI | GWGCWC | 2 cut(s) | 568, 780 |
| BslFI | GGGAC | 2 cut(s) | 417, 698 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 377, 378, 392, 433, 486, 515, 538 |
| BsmFI | GGGAC | 2 cut(s) | 417, 698 |
| BsmI | GAATGC | 1 cut(s) | 345 |
| BsnI | GGCC | 2 cut(s) | 328, 513 |
| Bsp1286I | GDGCHC | 2 cut(s) | 568, 780 |
| Bsp143I | GATC | 2 cut(s) | 45, 614 |
| BspACI | CCGC | 3 cut(s) | 424, 458, 789 |
| BspANI | GGCC | 2 cut(s) | 328, 513 |
| BspCNI | CTCAG | 2 cut(s) | 39, 681 |
| BspDI | ATCGAT | 1 cut(s) | 607 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspLI | GGNNCC | 3 cut(s) | 383, 526, 686 |
| BspMI | ACCTGC | 1 cut(s) | 562 |
| BspPI | GGATC | 1 cut(s) | 622 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 2 cut(s) | 381, 524 |
| BsrDI | GCAATG | 3 cut(s) | 100, 481, 644 |
| BssECI | CCNNGG | 3 cut(s) | 508, 514, 536 |
| BssMI | GATC | 2 cut(s) | 45, 614 |
| BssNAI | GTATAC | 1 cut(s) | 706 |
| BssNI | GRCGYC | 2 cut(s) | 7, 382 |
| BssSI | CACGAG | 1 cut(s) | 305 |
| BssT1I | CCWWGG | 1 cut(s) | 536 |
| Bst1107I | GTATAC | 1 cut(s) | 706 |
| Bst2BI | CACGAG | 1 cut(s) | 305 |
| Bst2UI | CCWGG | 2 cut(s) | 434, 510 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 2 cut(s) | 7, 382 |
| BstC8I | GCNNGC | 2 cut(s) | 649, 653 |
| BstDEI | CTNAG | 3 cut(s) | 26, 339, 689 |
| BstDSI | CCRYGG | 1 cut(s) | 514 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstH2I | RGCGCY | 3 cut(s) | 77, 88, 385 |
| BstHHI | GCGC | 3 cut(s) | 76, 87, 384 |
| BstKTI | GATC | 2 cut(s) | 48, 617 |
| BstMBI | GATC | 2 cut(s) | 45, 614 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 563, 648 |
| BstNI | CCWGG | 2 cut(s) | 434, 510 |
| BstNSI | RCATGY | 3 cut(s) | 43, 230, 468 |
| BstSCI | CCNGG | 2 cut(s) | 432, 508 |
| BstSLI | GKGCMC | 1 cut(s) | 780 |
| BstV2I | GAAGAC | 1 cut(s) | 774 |
| BstZ17I | GTATAC | 1 cut(s) | 706 |
| Bsu15I | ATCGAT | 1 cut(s) | 607 |
| Bsu36I | CCTNAGG | 1 cut(s) | 689 |
| BsuI | GTATCC | 2 cut(s) | 454, 515 |
| BsuRI | GGCC | 2 cut(s) | 328, 513 |
| BsuTUI | ATCGAT | 1 cut(s) | 607 |
| BtgI | CCRYGG | 1 cut(s) | 514 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| BveI | ACCTGC | 1 cut(s) | 562 |
| Cac8I | GCNNGC | 2 cut(s) | 649, 653 |
| CciI | TCATGA | 1 cut(s) | 349 |
| CfoI | GCGC | 3 cut(s) | 76, 87, 384 |
| Cfr13I | GGNCC | 2 cut(s) | 327, 685 |
| ClaI | ATCGAT | 1 cut(s) | 607 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 8 cut(s) | 40, 205, 227, 293, 350, 398, 465, 485 |
| CviJI | RGCY | 8 cut(s) | 64, 188, 244, 281, 328, 513, 662, 764 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 188, 244, 281, 328, 513, 662, 764 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 3 cut(s) | 26, 339, 689 |
| DinI | GGCGCC | 1 cut(s) | 383 |
| DpnI | GATC | 2 cut(s) | 47, 616 |
| DpnII | GATC | 2 cut(s) | 45, 614 |
| DriI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EaeI | YGGCCR | 1 cut(s) | 511 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco130I | CCWWGG | 1 cut(s) | 536 |
| Eco47I | GGWCC | 1 cut(s) | 685 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco57I | CTGAAG | 1 cut(s) | 786 |
| Eco81I | CCTNAGG | 1 cut(s) | 689 |
| EcoO109I | RGGNCCY | 1 cut(s) | 685 |
| EcoRII | CCWGG | 2 cut(s) | 432, 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 536 |
| EgeI | GGCGCC | 1 cut(s) | 383 |
| EheI | GGCGCC | 1 cut(s) | 383 |
| ErhI | CCWWGG | 1 cut(s) | 536 |
| FaeI | CATG | 8 cut(s) | 43, 208, 230, 296, 353, 401, 468, 488 |
| FaqI | GGGAC | 2 cut(s) | 417, 698 |
| FatI | CATG | 8 cut(s) | 39, 204, 226, 292, 349, 397, 464, 484 |
| FauNDI | CATATG | 2 cut(s) | 12, 408 |
| FblI | GTMKAC | 1 cut(s) | 705 |
| Fnu4HI | GCNGC | 1 cut(s) | 789 |
| FokI | GGATG | 1 cut(s) | 65 |
| Fsp4HI | GCNGC | 1 cut(s) | 789 |
| FspBI | CTAG | 3 cut(s) | 77, 537, 659 |
| GlaI | GCGC | 3 cut(s) | 75, 86, 383 |
| GluI | GCNGC | 1 cut(s) | 789 |
| HaeII | RGCGCY | 3 cut(s) | 77, 88, 385 |
| HaeIII | GGCC | 2 cut(s) | 328, 513 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 3 cut(s) | 76, 87, 384 |
| Hin1I | GRCGYC | 2 cut(s) | 7, 382 |
| Hin1II | CATG | 8 cut(s) | 43, 208, 230, 296, 353, 401, 468, 488 |
| Hin6I | GCGC | 3 cut(s) | 74, 85, 382 |
| HinP1I | GCGC | 3 cut(s) | 74, 85, 382 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 2 cut(s) | 736, 740 |
| Hpy166II | GTNNAC | 3 cut(s) | 221, 706, 778 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 2 cut(s) | 307, 350 |
| Hpy8I | GTNNAC | 3 cut(s) | 221, 706, 778 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 4 cut(s) | 118, 277, 431, 571 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 145, 368, 557, 642, 778 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 563, 648 |
| HpyF3I | CTNAG | 3 cut(s) | 26, 339, 689 |
| Hsp92I | GRCGYC | 2 cut(s) | 7, 382 |
| Hsp92II | CATG | 8 cut(s) | 43, 208, 230, 296, 353, 401, 468, 488 |
| HspAI | GCGC | 3 cut(s) | 74, 85, 382 |
| KasI | GGCGCC | 1 cut(s) | 381 |
| Kzo9I | GATC | 2 cut(s) | 45, 614 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 1 cut(s) | 694 |
| LpnPI | CCDG | 9 cut(s) | 129, 419, 446, 495, 522, 567, 658, 667, 701 |
| LweI | GCATC | 2 cut(s) | 43, 775 |
| MaeI | CTAG | 3 cut(s) | 77, 537, 659 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 2 cut(s) | 47, 616 |
| MboI | GATC | 2 cut(s) | 45, 614 |
| MboII | GAAGA | 7 cut(s) | 92, 182, 728, 731, 734, 743, 779 |
| MfeI | CAATTG | 1 cut(s) | 572 |
| MhlI | GDGCHC | 2 cut(s) | 568, 780 |
| MluCI | AATT | 6 cut(s) | 178, 246, 313, 319, 358, 572 |
| Mly113I | GGCGCC | 1 cut(s) | 382 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 249 |
| MslI | CAYNNNNRTG | 4 cut(s) | 305, 594, 609, 783 |
| MspR9I | CCNGG | 2 cut(s) | 434, 510 |
| MunI | CAATTG | 1 cut(s) | 572 |
| Mva1269I | GAATGC | 1 cut(s) | 345 |
| MvaI | CCWGG | 2 cut(s) | 434, 510 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 563, 648 |
| NarI | GGCGCC | 1 cut(s) | 382 |
| NdeI | CATATG | 2 cut(s) | 12, 408 |
| NdeII | GATC | 2 cut(s) | 45, 614 |
| NlaIII | CATG | 8 cut(s) | 43, 208, 230, 296, 353, 401, 468, 488 |
| NlaIV | GGNNCC | 3 cut(s) | 383, 526, 686 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NspI | RCATGY | 3 cut(s) | 43, 230, 468 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PciI | ACATGT | 3 cut(s) | 39, 226, 464 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PctI | GAATGC | 1 cut(s) | 345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 790 |
| PluTI | GGCGCC | 1 cut(s) | 385 |
| PpuMI | RGGWCCY | 1 cut(s) | 685 |
| PscI | ACATGT | 3 cut(s) | 39, 226, 464 |
| PsiI | TTATAA | 2 cut(s) | 318, 363 |
| Psp5II | RGGWCCY | 1 cut(s) | 685 |
| Psp6I | CCWGG | 2 cut(s) | 432, 508 |
| PspGI | CCWGG | 2 cut(s) | 432, 508 |
| PspN4I | GGNNCC | 3 cut(s) | 383, 526, 686 |
| PspPI | GGNCC | 2 cut(s) | 327, 685 |
| PspPPI | RGGWCCY | 1 cut(s) | 685 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 4 cut(s) | 305, 594, 609, 783 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 249 |
| SatI | GCNGC | 1 cut(s) | 789 |
| Sau3AI | GATC | 2 cut(s) | 45, 614 |
| Sau96I | GGNCC | 2 cut(s) | 327, 685 |
| ScrFI | CCNGG | 2 cut(s) | 434, 510 |
| SduI | GDGCHC | 2 cut(s) | 568, 780 |
| SfaNI | GCATC | 2 cut(s) | 43, 775 |
| SfoI | GGCGCC | 1 cut(s) | 383 |
| SinI | GGWCC | 1 cut(s) | 685 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 305, 594, 609, 783 |
| Sse9I | AATT | 6 cut(s) | 178, 246, 313, 319, 358, 572 |
| SsiI | CCGC | 3 cut(s) | 424, 458, 789 |
| SspDI | GGCGCC | 1 cut(s) | 381 |
| SspMI | CTAG | 3 cut(s) | 77, 537, 659 |
| StyD4I | CCNGG | 2 cut(s) | 432, 508 |
| StyI | CCWWGG | 1 cut(s) | 536 |
| TaqI | TCGA | 2 cut(s) | 44, 607 |
| TasI | AATT | 6 cut(s) | 178, 246, 313, 319, 358, 572 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TauI | GCSGC | 1 cut(s) | 791 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 249 |
| Tru9I | TTAA | 1 cut(s) | 249 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 3 cut(s) | 338, 405, 593 |
| TspGWI | ACGGA | 1 cut(s) | 408 |
| VneI | GTGCAC | 1 cut(s) | 776 |
| VpaK11BI | GGWCC | 1 cut(s) | 685 |
| XceI | RCATGY | 3 cut(s) | 43, 230, 468 |
| XmaJI | CCTAGG | 1 cut(s) | 536 |
| XmiI | GTMKAC | 1 cut(s) | 705 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 77, 537, 659 |