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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 708 |
| AccII | CGCG | 3 cut(s) | 218, 648, 853 |
| AciI | CCGC | 1 cut(s) | 800 |
| AfeI | AGCGCT | 1 cut(s) | 49 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 659, 730 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 778 |
| AgsI | TTSAA | 4 cut(s) | 22, 167, 355, 489 |
| AluBI | AGCT | 5 cut(s) | 155, 179, 383, 541, 563 |
| AluI | AGCT | 5 cut(s) | 155, 179, 383, 541, 563 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 543 |
| Alw26I | GTCTC | 4 cut(s) | 32, 456, 475, 847 |
| Aor51HI | AGCGCT | 1 cut(s) | 49 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| AspLEI | GCGC | 5 cut(s) | 50, 81, 220, 650, 855 |
| AspS9I | GGNCC | 2 cut(s) | 67, 710 |
| AsuHPI | GGTGA | 1 cut(s) | 734 |
| AvaII | GGWCC | 2 cut(s) | 67, 710 |
| BanII | GRGCYC | 1 cut(s) | 543 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 543 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 4 cut(s) | 92, 122, 321, 397 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 4 cut(s) | 32, 456, 475, 847 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 603, 720 |
| BfmI | CTRYAG | 1 cut(s) | 640 |
| BfoI | RGCGCY | 1 cut(s) | 51 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme18I | GGWCC | 2 cut(s) | 67, 710 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 710 |
| BmiI | GGNNCC | 5 cut(s) | 68, 550, 764, 804, 880 |
| BmsI | GCATC | 1 cut(s) | 853 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaBI | GATNNNNATC | 1 cut(s) | 440 |
| BsaI | GGTCTC | 1 cut(s) | 847 |
| BsaJI | CCNNGG | 4 cut(s) | 609, 654, 766, 813 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 241, 659, 730 |
| Bse1I | ACTGG | 1 cut(s) | 39 |
| Bse3DI | GCAATG | 1 cut(s) | 295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 440 |
| BseDI | CCNNGG | 4 cut(s) | 609, 654, 766, 813 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 1 cut(s) | 440 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 659, 730 |
| BseMI | GCAATG | 1 cut(s) | 295 |
| BseNI | ACTGG | 1 cut(s) | 39 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 3 cut(s) | 218, 648, 853 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 543 |
| BslFI | GGGAC | 1 cut(s) | 704 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 241, 659, 730 |
| BsmAI | GTCTC | 4 cut(s) | 32, 456, 475, 847 |
| BsmBI | CGTCTC | 1 cut(s) | 475 |
| BsmFI | GGGAC | 1 cut(s) | 704 |
| BsmI | GAATGC | 2 cut(s) | 236, 517 |
| Bso31I | GGTCTC | 1 cut(s) | 847 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 543 |
| Bsp143I | GATC | 3 cut(s) | 441, 833, 870 |
| Bsp19I | CCATGG | 1 cut(s) | 813 |
| BspACI | CCGC | 1 cut(s) | 800 |
| BspFNI | CGCG | 3 cut(s) | 218, 648, 853 |
| BspHI | TCATGA | 2 cut(s) | 195, 535 |
| BspLI | GGNNCC | 5 cut(s) | 68, 550, 764, 804, 880 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 847 |
| BsrDI | GCAATG | 1 cut(s) | 295 |
| BsrI | ACTGG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 4 cut(s) | 609, 654, 766, 813 |
| BssMI | GATC | 3 cut(s) | 441, 833, 870 |
| BssT1I | CCWWGG | 2 cut(s) | 654, 813 |
| Bst4CI | ACNGT | 1 cut(s) | 767 |
| Bst6I | CTCTTC | 1 cut(s) | 779 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 3 cut(s) | 618, 681, 830 |
| BstDSI | CCRYGG | 3 cut(s) | 609, 766, 813 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 3 cut(s) | 218, 648, 853 |
| BstH2I | RGCGCY | 1 cut(s) | 51 |
| BstHHI | GCGC | 5 cut(s) | 50, 81, 220, 650, 855 |
| BstKTI | GATC | 3 cut(s) | 444, 836, 873 |
| BstMAI | GTCTC | 4 cut(s) | 32, 456, 475, 847 |
| BstMBI | GATC | 3 cut(s) | 441, 833, 870 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 176 |
| BstSFI | CTRYAG | 1 cut(s) | 640 |
| BstUI | CGCG | 3 cut(s) | 218, 648, 853 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 3 cut(s) | 609, 766, 813 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 195, 535 |
| CfoI | GCGC | 5 cut(s) | 50, 81, 220, 650, 855 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 710 |
| CseI | GACGC | 2 cut(s) | 224, 672 |
| CviAII | CATG | 5 cut(s) | 196, 208, 536, 553, 814 |
| DdeI | CTNAG | 3 cut(s) | 618, 681, 830 |
| DpnI | GATC | 3 cut(s) | 443, 835, 872 |
| DpnII | GATC | 3 cut(s) | 441, 833, 870 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 708 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 708 |
| Eam1104I | CTCTTC | 1 cut(s) | 779 |
| EarI | CTCTTC | 1 cut(s) | 779 |
| EciI | GGCGGA | 1 cut(s) | 815 |
| Ecl136II | GAGCTC | 1 cut(s) | 541 |
| Eco130I | CCWWGG | 2 cut(s) | 654, 813 |
| Eco24I | GRGCYC | 1 cut(s) | 543 |
| Eco31I | GGTCTC | 1 cut(s) | 847 |
| Eco47I | GGWCC | 2 cut(s) | 67, 710 |
| Eco47III | AGCGCT | 1 cut(s) | 49 |
| Eco53kI | GAGCTC | 1 cut(s) | 541 |
| EcoICRI | GAGCTC | 1 cut(s) | 541 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 2 cut(s) | 654, 813 |
| EcoT38I | GRGCYC | 1 cut(s) | 543 |
| ErhI | CCWWGG | 2 cut(s) | 654, 813 |
| Esp3I | CGTCTC | 1 cut(s) | 475 |
| FaeI | CATG | 5 cut(s) | 199, 211, 539, 556, 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 704 |
| FatI | CATG | 5 cut(s) | 195, 207, 535, 552, 813 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 543 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 603, 720 |
| GlaI | GCGC | 5 cut(s) | 49, 80, 219, 649, 854 |
| GluI | GCNGC | 1 cut(s) | 278 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 1 cut(s) | 51 |
| HgaI | GACGC | 2 cut(s) | 224, 672 |
| HhaI | GCGC | 5 cut(s) | 50, 81, 220, 650, 855 |
| Hin1II | CATG | 5 cut(s) | 199, 211, 539, 556, 817 |
| Hin6I | GCGC | 5 cut(s) | 48, 79, 218, 648, 853 |
| HinP1I | GCGC | 5 cut(s) | 48, 79, 218, 648, 853 |
| HincII | GTYRAC | 1 cut(s) | 776 |
| HindII | GTYRAC | 1 cut(s) | 776 |
| HinfI | GANTC | 2 cut(s) | 299, 632 |
| HphI | GGTGA | 1 cut(s) | 734 |
| Hpy166II | GTNNAC | 2 cut(s) | 758, 776 |
| Hpy188I | TCNGA | 5 cut(s) | 71, 132, 379, 631, 810 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 196, 296, 311, 445, 536, 699 |
| Hpy8I | GTNNAC | 2 cut(s) | 758, 776 |
| HpyAV | CCTTC | 2 cut(s) | 472, 728 |
| HpyCH4III | ACNGT | 1 cut(s) | 767 |
| HpyCH4IV | ACGT | 3 cut(s) | 520, 703, 778 |
| HpyCH4V | TGCA | 1 cut(s) | 515 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 176 |
| HpyF3I | CTNAG | 3 cut(s) | 618, 681, 830 |
| HpySE526I | ACGT | 3 cut(s) | 520, 703, 778 |
| Hsp92II | CATG | 5 cut(s) | 199, 211, 539, 556, 817 |
| HspAI | GCGC | 5 cut(s) | 48, 79, 218, 648, 853 |
| Kzo9I | GATC | 3 cut(s) | 441, 833, 870 |
| LmnI | GCTCC | 5 cut(s) | 225, 548, 670, 802, 878 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| LweI | GCATC | 1 cut(s) | 853 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 603, 720 |
| MaeII | ACGT | 3 cut(s) | 520, 703, 778 |
| MaeIII | GTNAC | 3 cut(s) | 5, 296, 820 |
| MalI | GATC | 3 cut(s) | 443, 835, 872 |
| MboI | GATC | 3 cut(s) | 441, 833, 870 |
| MboII | GAAGA | 3 cut(s) | 257, 601, 796 |
| MhlI | GDGCHC | 2 cut(s) | 141, 543 |
| MluCI | AATT | 3 cut(s) | 189, 493, 694 |
| MlyI | GAGTC | 2 cut(s) | 293, 641 |
| MmeI | TCCRAC | 1 cut(s) | 833 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| Mva1269I | GAATGC | 2 cut(s) | 236, 517 |
| MvnI | CGCG | 3 cut(s) | 218, 648, 853 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 176 |
| NcoI | CCATGG | 1 cut(s) | 813 |
| NdeII | GATC | 3 cut(s) | 441, 833, 870 |
| NlaIII | CATG | 5 cut(s) | 199, 211, 539, 556, 817 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 550, 764, 804, 880 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PagI | TCATGA | 2 cut(s) | 195, 535 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 670 |
| PctI | GAATGC | 2 cut(s) | 236, 517 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 2 cut(s) | 293, 640 |
| PpsI | GAGTC | 2 cut(s) | 293, 640 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp124BI | GAGCTC | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 550, 764, 804, 880 |
| PspPI | GGNCC | 2 cut(s) | 67, 710 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SacI | GAGCTC | 1 cut(s) | 543 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 3 cut(s) | 441, 833, 870 |
| Sau96I | GGNCC | 2 cut(s) | 67, 710 |
| SchI | GAGTC | 2 cut(s) | 293, 641 |
| SduI | GDGCHC | 2 cut(s) | 141, 543 |
| SfaNI | GCATC | 1 cut(s) | 853 |
| SfcI | CTRYAG | 1 cut(s) | 640 |
| SinI | GGWCC | 2 cut(s) | 67, 710 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 2 cut(s) | 89, 272 |
| SmoI | CTYRAG | 2 cut(s) | 89, 272 |
| Sse9I | AATT | 3 cut(s) | 189, 493, 694 |
| SsiI | CCGC | 1 cut(s) | 800 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 603, 720 |
| SstI | GAGCTC | 1 cut(s) | 543 |
| StyI | CCWWGG | 2 cut(s) | 654, 813 |
| TaaI | ACNGT | 1 cut(s) | 767 |
| TaiI | ACGT | 3 cut(s) | 523, 706, 781 |
| TaqI | TCGA | 3 cut(s) | 444, 499, 869 |
| TasI | AATT | 3 cut(s) | 189, 493, 694 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 3 cut(s) | 224, 524, 569 |
| TspGWI | ACGGA | 1 cut(s) | 775 |
| TspRI | CASTG | 1 cut(s) | 39 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 710 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XspI | CTAG | 4 cut(s) | 45, 126, 603, 720 |