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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 334 |
| AciI | CCGC | 5 cut(s) | 91, 140, 165, 454, 739 |
| AclWI | GGATC | 1 cut(s) | 360 |
| AcsI | RAATTY | 1 cut(s) | 295 |
| AcuI | CTGAAG | 1 cut(s) | 345 |
| AfaI | GTAC | 3 cut(s) | 252, 626, 783 |
| AgsI | TTSAA | 3 cut(s) | 277, 301, 754 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 114 |
| AjiI | CACGTC | 2 cut(s) | 145, 511 |
| AjnI | CCWGG | 1 cut(s) | 504 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 666, 698 |
| AluBI | AGCT | 5 cut(s) | 10, 271, 329, 530, 536 |
| AluI | AGCT | 5 cut(s) | 10, 271, 329, 530, 536 |
| Alw26I | GTCTC | 3 cut(s) | 101, 238, 670 |
| AlwI | GGATC | 1 cut(s) | 360 |
| Ama87I | CYCGRG | 1 cut(s) | 494 |
| ApeKI | GCWGC | 5 cut(s) | 131, 150, 159, 167, 554 |
| ApoI | RAATTY | 1 cut(s) | 295 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 783 |
| AspA2I | CCTAGG | 1 cut(s) | 317 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| AsuNHI | GCTAGC | 1 cut(s) | 86 |
| AvaI | CYCGRG | 1 cut(s) | 494 |
| AvrII | CCTAGG | 1 cut(s) | 317 |
| BanII | GRGCYC | 1 cut(s) | 35 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 318, 350 |
| BauI | CACGAG | 1 cut(s) | 28 |
| BbsI | GAAGAC | 2 cut(s) | 26, 651 |
| BbvI | GCAGC | 5 cut(s) | 137, 143, 154, 171, 566 |
| BccI | CCATC | 3 cut(s) | 467, 593, 720 |
| BciT130I | CCWGG | 1 cut(s) | 506 |
| BciVI | GTATCC | 1 cut(s) | 478 |
| BcoDI | GTCTC | 3 cut(s) | 101, 238, 670 |
| BfaI | CTAG | 7 cut(s) | 87, 195, 318, 426, 501, 716, 799 |
| BfmI | CTRYAG | 3 cut(s) | 73, 129, 157 |
| BfuI | GTATCC | 1 cut(s) | 478 |
| BisI | GCNGC | 6 cut(s) | 91, 132, 151, 160, 168, 555 |
| BlnI | CCTAGG | 1 cut(s) | 317 |
| BlsI | GCNGC | 6 cut(s) | 92, 133, 152, 161, 169, 556 |
| BmcAI | AGTACT | 1 cut(s) | 783 |
| Bme1390I | CCNGG | 1 cut(s) | 506 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 114 |
| BmeT110I | CYCGRG | 1 cut(s) | 494 |
| BmgBI | CACGTC | 2 cut(s) | 145, 511 |
| BmrFI | CCNGG | 1 cut(s) | 506 |
| BmsI | GCATC | 1 cut(s) | 469 |
| BmtI | GCTAGC | 1 cut(s) | 90 |
| BpiI | GAAGAC | 2 cut(s) | 26, 651 |
| BpmI | CTGGAG | 1 cut(s) | 605 |
| BpuEI | CTTGAG | 1 cut(s) | 516 |
| BsaI | GGTCTC | 2 cut(s) | 238, 670 |
| BsaJI | CCNNGG | 1 cut(s) | 317 |
| Bse1I | ACTGG | 2 cut(s) | 486, 622 |
| Bse3DI | GCAATG | 1 cut(s) | 176 |
| BseBI | CCWGG | 1 cut(s) | 506 |
| BseDI | CCNNGG | 1 cut(s) | 317 |
| BseGI | GGATG | 4 cut(s) | 223, 588, 616, 690 |
| BseMI | GCAATG | 1 cut(s) | 176 |
| BseNI | ACTGG | 2 cut(s) | 486, 622 |
| BseRI | GAGGAG | 2 cut(s) | 180, 193 |
| BseXI | GCAGC | 5 cut(s) | 137, 143, 154, 171, 566 |
| BseYI | CCCAGC | 1 cut(s) | 10 |
| BsiHKCI | CYCGRG | 1 cut(s) | 494 |
| BsmAI | GTCTC | 3 cut(s) | 101, 238, 670 |
| BsmI | GAATGC | 1 cut(s) | 181 |
| Bso31I | GGTCTC | 2 cut(s) | 238, 670 |
| BsoBI | CYCGRG | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 1 cut(s) | 35 |
| Bsp1407I | TGTACA | 1 cut(s) | 250 |
| Bsp143I | GATC | 1 cut(s) | 352 |
| BspACI | CCGC | 5 cut(s) | 91, 140, 165, 454, 739 |
| BspMAI | CTGCAG | 2 cut(s) | 133, 161 |
| BspOI | GCTAGC | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 360 |
| BspTNI | GGTCTC | 2 cut(s) | 238, 670 |
| BsrDI | GCAATG | 1 cut(s) | 176 |
| BsrGI | TGTACA | 1 cut(s) | 250 |
| BsrI | ACTGG | 2 cut(s) | 486, 622 |
| BssECI | CCNNGG | 1 cut(s) | 317 |
| BssMI | GATC | 1 cut(s) | 352 |
| BssSI | CACGAG | 1 cut(s) | 28 |
| BssT1I | CCWWGG | 1 cut(s) | 317 |
| Bst2BI | CACGAG | 1 cut(s) | 28 |
| Bst2UI | CCWGG | 1 cut(s) | 506 |
| Bst4CI | ACNGT | 3 cut(s) | 103, 116, 520 |
| BstAUI | TGTACA | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 6 cut(s) | 80, 84, 88, 172, 458, 528 |
| BstDEI | CTNAG | 1 cut(s) | 374 |
| BstF5I | GGATG | 4 cut(s) | 223, 588, 616, 690 |
| BstKTI | GATC | 1 cut(s) | 355 |
| BstMAI | GTCTC | 3 cut(s) | 101, 238, 670 |
| BstMBI | GATC | 1 cut(s) | 352 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 156, 159, 542, 551, 575 |
| BstNI | CCWGG | 1 cut(s) | 506 |
| BstNSI | RCATGY | 1 cut(s) | 174 |
| BstSCI | CCNGG | 1 cut(s) | 504 |
| BstSFI | CTRYAG | 3 cut(s) | 73, 129, 157 |
| BstV1I | GCAGC | 5 cut(s) | 137, 143, 154, 171, 566 |
| BstV2I | GAAGAC | 2 cut(s) | 26, 651 |
| BsuI | GTATCC | 1 cut(s) | 478 |
| BtrI | CACGTC | 2 cut(s) | 145, 511 |
| BtsCI | GGATG | 4 cut(s) | 223, 588, 616, 690 |
| Cac8I | GCNNGC | 6 cut(s) | 80, 84, 88, 172, 458, 528 |
| Csp6I | GTAC | 3 cut(s) | 251, 625, 782 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 245, 280 |
| CviAII | CATG | 1 cut(s) | 171 |
| CviQI | GTAC | 3 cut(s) | 251, 625, 782 |
| DdeI | CTNAG | 1 cut(s) | 374 |
| DpnI | GATC | 1 cut(s) | 354 |
| DpnII | GATC | 1 cut(s) | 352 |
| DriI | GACNNNNNGTC | 1 cut(s) | 114 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 114 |
| EciI | GGCGGA | 1 cut(s) | 443 |
| Eco130I | CCWWGG | 1 cut(s) | 317 |
| Eco24I | GRGCYC | 1 cut(s) | 35 |
| Eco31I | GGTCTC | 2 cut(s) | 238, 670 |
| Eco32I | GATATC | 1 cut(s) | 431 |
| Eco57I | CTGAAG | 1 cut(s) | 345 |
| Eco88I | CYCGRG | 1 cut(s) | 494 |
| EcoRII | CCWGG | 1 cut(s) | 504 |
| EcoRV | GATATC | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 1 cut(s) | 317 |
| EcoT22I | ATGCAT | 1 cut(s) | 220 |
| EcoT38I | GRGCYC | 1 cut(s) | 35 |
| ErhI | CCWWGG | 1 cut(s) | 317 |
| FaeI | CATG | 1 cut(s) | 174 |
| FaiI | YATR | 7 cut(s) | 172, 216, 220, 606, 608, 635, 732 |
| FatI | CATG | 1 cut(s) | 170 |
| FauNDI | CATATG | 1 cut(s) | 606 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 6 cut(s) | 91, 132, 151, 160, 168, 555 |
| FokI | GGATG | 4 cut(s) | 210, 575, 623, 677 |
| FriOI | GRGCYC | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 6 cut(s) | 91, 132, 151, 160, 168, 555 |
| FspBI | CTAG | 7 cut(s) | 87, 195, 318, 426, 501, 716, 799 |
| GluI | GCNGC | 6 cut(s) | 91, 132, 151, 160, 168, 555 |
| GsaI | CCCAGC | 1 cut(s) | 14 |
| GsuI | CTGGAG | 1 cut(s) | 605 |
| Hin1II | CATG | 1 cut(s) | 174 |
| HindIII | AAGCTT | 1 cut(s) | 534 |
| HinfI | GANTC | 7 cut(s) | 234, 311, 422, 490, 598, 614, 698 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 3 cut(s) | 253, 335, 382 |
| Hpy188I | TCNGA | 3 cut(s) | 262, 294, 778 |
| Hpy188III | TCNNGA | 5 cut(s) | 426, 446, 494, 710, 764 |
| Hpy8I | GTNNAC | 3 cut(s) | 253, 335, 382 |
| Hpy99I | CGWCG | 1 cut(s) | 120 |
| HpyAV | CCTTC | 1 cut(s) | 648 |
| HpyCH4III | ACNGT | 3 cut(s) | 103, 116, 520 |
| HpyCH4IV | ACGT | 2 cut(s) | 144, 510 |
| HpyCH4V | TGCA | 6 cut(s) | 131, 159, 170, 181, 218, 368 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 156, 159, 542, 551, 575 |
| HpyF3I | CTNAG | 1 cut(s) | 374 |
| HpySE526I | ACGT | 2 cut(s) | 144, 510 |
| Hsp92II | CATG | 1 cut(s) | 174 |
| Kzo9I | GATC | 1 cut(s) | 352 |
| LmnI | GCTCC | 3 cut(s) | 268, 295, 409 |
| Lsp1109I | GCAGC | 5 cut(s) | 137, 143, 154, 171, 566 |
| LweI | GCATC | 1 cut(s) | 469 |
| MaeI | CTAG | 7 cut(s) | 87, 195, 318, 426, 501, 716, 799 |
| MaeII | ACGT | 2 cut(s) | 144, 510 |
| MaeIII | GTNAC | 1 cut(s) | 695 |
| MalI | GATC | 1 cut(s) | 354 |
| MboI | GATC | 1 cut(s) | 352 |
| MboII | GAAGA | 5 cut(s) | 31, 177, 653, 656, 686 |
| MhlI | GDGCHC | 1 cut(s) | 35 |
| MluCI | AATT | 2 cut(s) | 295, 392 |
| MlyI | GAGTC | 4 cut(s) | 243, 416, 592, 692 |
| MnlI | CCTC | 6 cut(s) | 104, 201, 214, 343, 559, 746 |
| Mph1103I | ATGCAT | 1 cut(s) | 220 |
| MroXI | GAANNNNTTC | 1 cut(s) | 783 |
| MseI | TTAA | 1 cut(s) | 792 |
| MslI | CAYNNNNRTG | 2 cut(s) | 593, 609 |
| MspA1I | CMGCKG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 1 cut(s) | 506 |
| Mva1269I | GAATGC | 1 cut(s) | 181 |
| MvaI | CCWGG | 1 cut(s) | 506 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 156, 159, 542, 551, 575 |
| NdeI | CATATG | 1 cut(s) | 606 |
| NdeII | GATC | 1 cut(s) | 352 |
| NheI | GCTAGC | 1 cut(s) | 86 |
| NlaIII | CATG | 1 cut(s) | 174 |
| NmuCI | GTSAC | 1 cut(s) | 695 |
| NsiI | ATGCAT | 1 cut(s) | 220 |
| NspI | RCATGY | 1 cut(s) | 174 |
| PaeI | GCATGC | 1 cut(s) | 174 |
| PaeR7I | CTCGAG | 1 cut(s) | 494 |
| PctI | GAATGC | 1 cut(s) | 181 |
| PdmI | GAANNNNTTC | 1 cut(s) | 783 |
| PfeI | GAWTC | 3 cut(s) | 311, 490, 614 |
| PkrI | GCNGC | 6 cut(s) | 92, 133, 152, 161, 169, 556 |
| PleI | GAGTC | 4 cut(s) | 242, 416, 592, 692 |
| PpsI | GAGTC | 4 cut(s) | 242, 416, 592, 692 |
| Psp6I | CCWGG | 1 cut(s) | 504 |
| PspFI | CCCAGC | 1 cut(s) | 10 |
| PspGI | CCWGG | 1 cut(s) | 504 |
| PstI | CTGCAG | 2 cut(s) | 133, 161 |
| RsaI | GTAC | 3 cut(s) | 252, 626, 783 |
| RsaNI | GTAC | 3 cut(s) | 251, 625, 782 |
| RseI | CAYNNNNRTG | 2 cut(s) | 593, 609 |
| SaqAI | TTAA | 1 cut(s) | 792 |
| SatI | GCNGC | 6 cut(s) | 91, 132, 151, 160, 168, 555 |
| Sau3AI | GATC | 1 cut(s) | 352 |
| ScaI | AGTACT | 1 cut(s) | 783 |
| SchI | GAGTC | 4 cut(s) | 243, 416, 592, 692 |
| ScrFI | CCNGG | 1 cut(s) | 506 |
| SduI | GDGCHC | 1 cut(s) | 35 |
| SfaNI | GCATC | 1 cut(s) | 469 |
| SfcI | CTRYAG | 3 cut(s) | 73, 129, 157 |
| Sfr274I | CTCGAG | 1 cut(s) | 494 |
| SlaI | CTCGAG | 1 cut(s) | 494 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 593, 609 |
| SmlI | CTYRAG | 2 cut(s) | 494, 531 |
| SmoI | CTYRAG | 2 cut(s) | 494, 531 |
| SphI | GCATGC | 1 cut(s) | 174 |
| Sse9I | AATT | 2 cut(s) | 295, 392 |
| SsiI | CCGC | 5 cut(s) | 91, 140, 165, 454, 739 |
| SspMI | CTAG | 7 cut(s) | 87, 195, 318, 426, 501, 716, 799 |
| StyD4I | CCNGG | 1 cut(s) | 504 |
| StyI | CCWWGG | 1 cut(s) | 317 |
| TaaI | ACNGT | 3 cut(s) | 103, 116, 520 |
| TaiI | ACGT | 2 cut(s) | 147, 513 |
| TaqI | TCGA | 3 cut(s) | 355, 495, 672 |
| TasI | AATT | 2 cut(s) | 295, 392 |
| TatI | WGTACW | 2 cut(s) | 250, 781 |
| TauI | GCSGC | 1 cut(s) | 93 |
| TfiI | GAWTC | 3 cut(s) | 311, 490, 614 |
| Tru1I | TTAA | 1 cut(s) | 792 |
| Tru9I | TTAA | 1 cut(s) | 792 |
| TseFI | GTSAC | 1 cut(s) | 695 |
| TseI | GCWGC | 5 cut(s) | 131, 150, 159, 167, 554 |
| Tsp45I | GTSAC | 1 cut(s) | 695 |
| TspDTI | ATGAA | 2 cut(s) | 650, 654 |
| TspGWI | ACGGA | 1 cut(s) | 683 |
| XapI | RAATTY | 1 cut(s) | 295 |
| XbaI | TCTAGA | 1 cut(s) | 425 |
| XceI | RCATGY | 1 cut(s) | 174 |
| XhoI | CTCGAG | 1 cut(s) | 494 |
| XmaJI | CCTAGG | 1 cut(s) | 317 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| XmnI | GAANNNNTTC | 1 cut(s) | 783 |
| XspI | CTAG | 7 cut(s) | 87, 195, 318, 426, 501, 716, 799 |
| ZrmI | AGTACT | 1 cut(s) | 783 |
| Zsp2I | ATGCAT | 1 cut(s) | 220 |