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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 75 |
| AatII | GACGTC | 1 cut(s) | 73 |
| AccII | CGCG | 2 cut(s) | 112, 264 |
| AciI | CCGC | 2 cut(s) | 262, 264 |
| AclWI | GGATC | 1 cut(s) | 292 |
| AcoI | YGGCCR | 1 cut(s) | 196 |
| AcyI | GRCGYC | 1 cut(s) | 70 |
| AfaI | GTAC | 1 cut(s) | 302 |
| AgsI | TTSAA | 2 cut(s) | 94, 436 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 57, 89 |
| AluBI | AGCT | 5 cut(s) | 317, 361, 367, 374, 407 |
| AluI | AGCT | 5 cut(s) | 317, 361, 367, 374, 407 |
| Alw26I | GTCTC | 2 cut(s) | 441, 455 |
| AlwI | GGATC | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 1 cut(s) | 243 |
| AoxI | GGCC | 6 cut(s) | 118, 127, 151, 160, 178, 196 |
| AspS9I | GGNCC | 2 cut(s) | 77, 100 |
| AsuNHI | GCTAGC | 1 cut(s) | 317 |
| AvaI | CYCGRG | 1 cut(s) | 243 |
| AvaII | GGWCC | 2 cut(s) | 77, 100 |
| BccI | CCATC | 1 cut(s) | 389 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcoDI | GTCTC | 2 cut(s) | 441, 455 |
| BfaI | CTAG | 2 cut(s) | 318, 368 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 126, 159, 168 |
| Bme18I | GGWCC | 2 cut(s) | 77, 100 |
| BmeT110I | CYCGRG | 1 cut(s) | 243 |
| BmgT120I | GGNCC | 2 cut(s) | 77, 100 |
| BmiI | GGNNCC | 1 cut(s) | 41 |
| BmsI | GCATC | 1 cut(s) | 116 |
| BmtI | GCTAGC | 1 cut(s) | 321 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 2 cut(s) | 53, 383 |
| BsaBI | GATNNNNATC | 2 cut(s) | 283, 414 |
| BsaHI | GRCGYC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 5 cut(s) | 121, 130, 163, 181, 262 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| Bse8I | GATNNNNATC | 2 cut(s) | 283, 414 |
| BseDI | CCNNGG | 5 cut(s) | 121, 130, 163, 181, 262 |
| BseJI | GATNNNNATC | 2 cut(s) | 283, 414 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| Bsh1236I | CGCG | 2 cut(s) | 112, 264 |
| BshFI | GGCC | 6 cut(s) | 120, 129, 153, 162, 180, 198 |
| BsiHKCI | CYCGRG | 1 cut(s) | 243 |
| BsiSI | CCGG | 1 cut(s) | 467 |
| BslFI | GGGAC | 2 cut(s) | 154, 339 |
| BsmAI | GTCTC | 2 cut(s) | 441, 455 |
| BsmFI | GGGAC | 2 cut(s) | 154, 339 |
| BsnI | GGCC | 6 cut(s) | 120, 129, 153, 162, 180, 198 |
| BsoBI | CYCGRG | 1 cut(s) | 243 |
| Bsp143I | GATC | 2 cut(s) | 284, 334 |
| Bsp19I | CCATGG | 1 cut(s) | 121 |
| BspACI | CCGC | 2 cut(s) | 262, 264 |
| BspANI | GGCC | 6 cut(s) | 120, 129, 153, 162, 180, 198 |
| BspFNI | CGCG | 2 cut(s) | 112, 264 |
| BspLI | GGNNCC | 1 cut(s) | 41 |
| BspOI | GCTAGC | 1 cut(s) | 321 |
| BspPI | GGATC | 1 cut(s) | 292 |
| BssECI | CCNNGG | 5 cut(s) | 121, 130, 163, 181, 262 |
| BssMI | GATC | 2 cut(s) | 284, 334 |
| BssNI | GRCGYC | 1 cut(s) | 70 |
| BssT1I | CCWWGG | 1 cut(s) | 121 |
| Bst6I | CTCTTC | 1 cut(s) | 151 |
| BstACI | GRCGYC | 1 cut(s) | 70 |
| BstC8I | GCNNGC | 1 cut(s) | 319 |
| BstDEI | CTNAG | 1 cut(s) | 228 |
| BstDSI | CCRYGG | 2 cut(s) | 121, 262 |
| BstEII | GGTNACC | 1 cut(s) | 185 |
| BstFNI | CGCG | 2 cut(s) | 112, 264 |
| BstKTI | GATC | 2 cut(s) | 287, 337 |
| BstMAI | GTCTC | 2 cut(s) | 441, 455 |
| BstMBI | GATC | 2 cut(s) | 284, 334 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 126, 159, 168, 177, 209, 270, 318 |
| BstPI | GGTNACC | 1 cut(s) | 185 |
| BstUI | CGCG | 2 cut(s) | 112, 264 |
| BsuRI | GGCC | 6 cut(s) | 120, 129, 153, 162, 180, 198 |
| BtgI | CCRYGG | 2 cut(s) | 121, 262 |
| BtgZI | GCGATG | 1 cut(s) | 93 |
| Cac8I | GCNNGC | 1 cut(s) | 319 |
| Cfr13I | GGNCC | 2 cut(s) | 77, 100 |
| Cfr42I | CCGCGG | 1 cut(s) | 265 |
| Csp6I | GTAC | 1 cut(s) | 301 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 262, 297 |
| CviAII | CATG | 2 cut(s) | 20, 122 |
| CviQI | GTAC | 1 cut(s) | 301 |
| DdeI | CTNAG | 1 cut(s) | 228 |
| DpnI | GATC | 2 cut(s) | 286, 336 |
| DpnII | GATC | 2 cut(s) | 284, 334 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 75 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 75 |
| EaeI | YGGCCR | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 151 |
| EarI | CTCTTC | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 1 cut(s) | 121 |
| Eco47I | GGWCC | 2 cut(s) | 77, 100 |
| Eco88I | CYCGRG | 1 cut(s) | 243 |
| Eco91I | GGTNACC | 1 cut(s) | 185 |
| EcoO65I | GGTNACC | 1 cut(s) | 185 |
| EcoT14I | CCWWGG | 1 cut(s) | 121 |
| ErhI | CCWWGG | 1 cut(s) | 121 |
| FaeI | CATG | 2 cut(s) | 23, 125 |
| FaiI | YATR | 8 cut(s) | 21, 29, 123, 174, 210, 237, 349, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 57, 89 |
| FaqI | GGGAC | 2 cut(s) | 154, 339 |
| FatI | CATG | 2 cut(s) | 19, 121 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| FspBI | CTAG | 2 cut(s) | 318, 368 |
| HaeIII | GGCC | 6 cut(s) | 120, 129, 153, 162, 180, 198 |
| HapII | CCGG | 1 cut(s) | 467 |
| Hin1I | GRCGYC | 1 cut(s) | 70 |
| Hin1II | CATG | 2 cut(s) | 23, 125 |
| HindIII | AAGCTT | 2 cut(s) | 359, 372 |
| HinfI | GANTC | 1 cut(s) | 449 |
| HpaII | CCGG | 1 cut(s) | 467 |
| Hpy188III | TCNNGA | 2 cut(s) | 94, 245 |
| HpyAV | CCTTC | 3 cut(s) | 59, 91, 143 |
| HpyCH4IV | ACGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 273, 312 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 126, 159, 168, 177, 209, 270, 318 |
| HpyF3I | CTNAG | 1 cut(s) | 228 |
| HpySE526I | ACGT | 1 cut(s) | 70 |
| Hsp92I | GRCGYC | 1 cut(s) | 70 |
| Hsp92II | CATG | 2 cut(s) | 23, 125 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| KspI | CCGCGG | 1 cut(s) | 265 |
| Kzo9I | GATC | 2 cut(s) | 284, 334 |
| LweI | GCATC | 1 cut(s) | 116 |
| MaeI | CTAG | 2 cut(s) | 318, 368 |
| MaeII | ACGT | 1 cut(s) | 70 |
| MaeIII | GTNAC | 1 cut(s) | 185 |
| MalI | GATC | 2 cut(s) | 286, 336 |
| MboI | GATC | 2 cut(s) | 284, 334 |
| MboII | GAAGA | 3 cut(s) | 69, 168, 404 |
| MluCI | AATT | 3 cut(s) | 268, 307, 438 |
| MlyI | GAGTC | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 1 cut(s) | 264 |
| MspI | CCGG | 1 cut(s) | 467 |
| MvnI | CGCG | 2 cut(s) | 112, 264 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 126, 159, 168, 177, 209, 270, 318 |
| NcoI | CCATGG | 1 cut(s) | 121 |
| NdeII | GATC | 2 cut(s) | 284, 334 |
| NheI | GCTAGC | 1 cut(s) | 317 |
| NlaIII | CATG | 2 cut(s) | 23, 125 |
| NlaIV | GGNNCC | 1 cut(s) | 41 |
| NmeAIII | GCCGAG | 4 cut(s) | 155, 188, 206, 224 |
| PaeR7I | CTCGAG | 1 cut(s) | 243 |
| PleI | GAGTC | 1 cut(s) | 443 |
| PpsI | GAGTC | 1 cut(s) | 443 |
| PspEI | GGTNACC | 1 cut(s) | 185 |
| PspN4I | GGNNCC | 1 cut(s) | 41 |
| PspPI | GGNCC | 2 cut(s) | 77, 100 |
| RsaI | GTAC | 1 cut(s) | 302 |
| RsaNI | GTAC | 1 cut(s) | 301 |
| SacII | CCGCGG | 1 cut(s) | 265 |
| Sau3AI | GATC | 2 cut(s) | 284, 334 |
| Sau96I | GGNCC | 2 cut(s) | 77, 100 |
| SchI | GAGTC | 1 cut(s) | 443 |
| SetI | ASST | 8 cut(s) | 73, 187, 209, 319, 363, 369, 376, 409 |
| SfaNI | GCATC | 1 cut(s) | 116 |
| SfiI | GGCCNNNNNGGCC | 2 cut(s) | 126, 159 |
| Sfr274I | CTCGAG | 1 cut(s) | 243 |
| Sfr303I | CCGCGG | 1 cut(s) | 265 |
| SgrBI | CCGCGG | 1 cut(s) | 265 |
| SinI | GGWCC | 2 cut(s) | 77, 100 |
| SlaI | CTCGAG | 1 cut(s) | 243 |
| SmlI | CTYRAG | 3 cut(s) | 32, 243, 362 |
| SmoI | CTYRAG | 3 cut(s) | 32, 243, 362 |
| Sse9I | AATT | 3 cut(s) | 268, 307, 438 |
| SsiI | CCGC | 2 cut(s) | 262, 264 |
| SspMI | CTAG | 2 cut(s) | 318, 368 |
| StyI | CCWWGG | 1 cut(s) | 121 |
| TaiI | ACGT | 1 cut(s) | 73 |
| TaqI | TCGA | 2 cut(s) | 244, 452 |
| TasI | AATT | 3 cut(s) | 268, 307, 438 |
| TspDTI | ATGAA | 2 cut(s) | 252, 399 |
| VpaK11BI | GGWCC | 2 cut(s) | 77, 100 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 110 |
| XhoI | CTCGAG | 1 cut(s) | 243 |
| XspI | CTAG | 2 cut(s) | 318, 368 |
| ZraI | GACGTC | 1 cut(s) | 71 |